BAC Information

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BAC

Clone NameB6Ng01-115B22
Chromosome5 (Build37)
Map Location 13,974,143 - 13,975,278
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148
Downstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115B22.bB6Ng01-115B22.g
ACCDH920466DH920467
length1,1211,208
definitionDH920466|Mus musculus domesticus DNA, BAC clone: B6Ng01-115B22, 5' end.DH920467|Mus musculus domesticus DNA, BAC clone: B6Ng01-115B22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactagcacttgaaaggaattgtccttgaaaatctccatgaaaag
gactttccattttttaaatatacccaatttagggggaaaagtagcaagtt
gatttgaaaatgtcaatcaagaggtagatataatcatttgtactttaaat
tttataatgaaaatttaaaatggtagtatatcttatttgaaaaaattcag
taattgttgtcattagtatcctaataattttctaagaatgatttgaatgt
ctttcacaaaggcttacaattccgtaaagcaaaaaagttccactatgaac
aatgaaatgaacactaaactggagaaaatcaagcatcaactataagttga
gaaacgttttcatcagaagaaaacgatgcaggtatatgaaatttaaacag
aggatggtgtatcttattgtgacatatgttccgatgagaaaggtcaagat
atgccctcatgcaaggcaccctgctgaggggccttaggttcggacattag
tgttcctttgagggaaaacagttgttacagtgaaagtattatctggcaca
tagttaagccagtagcttaagtttcctgaaaacattaattatccagtcat
cctgtgagtcactgaagtaatgaaattcaagatgggttgatttgacattg
ttaagggtcttgaaagaatgtgaaagggcctgtgctgatttgagggatca
ggccagcatgaggtgtgtggagaatgctacaggcaaaaacggtgagtcat
ctccaggcggctgttggctgagtcactcctctggccttcacagtatcttg
tatttctccaggtggtcatagccactctgtctttcccccgcattccagat
ccaccatcttttcctgtccttccttttaaatgacctctttgggtctatat
agctcttttttcctaattcaaacaacaacaaaaaggatgtgtgtacaaat
gtcaagaaagttgataaacagacaaatatggaagtatacctaaaatttta
aagttttttacagtttaagttttttaaagtttcacattgtgacatatttt
ttgaaacagtttataataatgaaatcatatatgtaaattatattagtgtg
aactatactaaataaatatat
gaattcaaaaatgctgaaattattggaggaaaagatagactatgccctac
atggtgaaggtgtaaggaaggacttttgccccaggggttaaagccaacca
ttgacaattgtgttagcatgaggttcaagagcttccggaaagcaaaggaa
agagctcacgttcagatagtgggagacagtctttgccagctacacagatt
aatatccaagttacattaaaaagaaaaaaacattcaaagatacaaataat
ccaattttgaagatgaactatggttatgatcagagagctctatggaagaa
agaaaaaggactaaaatatatctcaagaagcgtttatcatttttaacaat
tagggaaacacacatagaaacagcttcgggatttcatctttcctgaatca
gaatgcaaagataaccagagcacccaacaacaaatgctggtgaggaagtg
aaggaacactcagccactatgttgggtgtgcaaacttgtgcagtcactct
ggaaatcagtgtgcagaattctcagaaagctaaaaacaagtctccatatg
gcccagcaacatcaccccttctcacattctcaacacctagacacccacag
atgcttgctcagccatgttcactgatgctctactcacagtaggtagaaaa
ttgaaacaatctaaatttcggctgacaagttgataagataatacactgca
ttttcacagtggaactatgaagaaaatgaagtcaagaaatctatctgcag
gcaaatggatttatctaaaaggcattatattaaccttgtaacccaggcct
ataaaatgaaaagtcacagtttcttatgtgtagttctttgctacaactct
ttacatgtgagtatacagccttgagtaatggcagaagacaggaagaaagg
gacatgaggagtggggaaaagcccctacagcaagagctgaatgggccctc
tcacatcacttaccaccatctgaaaacaaagatatttacatgacaatttc
atagtcgtacaaaaatacagtagaattacagtagcagtgaaagagtttta
tggtgggagcttacacacatgaggagctgattaaaggtgaaagcattgga
aattgaagcactgccctagagagctacatttctagtgggctcatgtgtac
actccatgcacgcccattgtttttgaaaagagaacctgttccacaacgac
actctcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_13974143_13975278
seq2: B6Ng01-115B22.b_49_1169

seq1  GAATTCACTAGCACTTGAAAGGAATTGTCCTTGAAAATCTCCATGAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGCACTTGAAAGGAATTGTCCTTGAAAATCTCCATGAAAAG  50

seq1  GACTTTCCATTTTTTAAATATACCCAATTTAGGGGGAAAAGTAGCAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCCATTTTTTAAATATACCCAATTTAGGGGGAAAAGTAGCAAGTT  100

seq1  GATTTGAAAATGTCAATCAAGAGGTAGATATAATCATTTGTACTTTAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAAAATGTCAATCAAGAGGTAGATATAATCATTTGTACTTTAAAT  150

seq1  TTTATAATGAAAATTTAAAATGGTAGTATATCTTATTTGAAAAAATTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATGAAAATTTAAAATGGTAGTATATCTTATTTGAAAAAATTCAG  200

seq1  TAATTGTTGTCATTAGTATCCTAATAATTTTCTAAGAATGATTTGAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTTGTCATTAGTATCCTAATAATTTTCTAAGAATGATTTGAATGT  250

seq1  CTTTCACAAAGGCTTACAATTCCGTAAAGCAAAAAAGTTCCACTATGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACAAAGGCTTACAATTCCGTAAAGCAAAAAAGTTCCACTATGAAC  300

seq1  AATGAAATGAACACTAAACTGGAGAAAATCAAGCATCAACTATAAGTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATGAACACTAAACTGGAGAAAATCAAGCATCAACTATAAGTTGA  350

seq1  GAAACGTTTTCATCAGAAGAAAACGATGCAGGTATATGAAATTTAAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGTTTTCATCAGAAGAAAACGATGCAGGTATATGAAATTTAAACAG  400

seq1  AGGATGGTGTATCTTATTGTGACATATGTTCCGATGAGAAAGGTCAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGTGTATCTTATTGTGACATATGTTCCGATGAGAAAGGTCAAGAT  450

seq1  ATGCCCTCATGCAAGGCACCCTGCTGAGGGGCCTTAGGTTCGGACATTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTCATGCAAGGCACCCTGCTGAGGGGCCTTAGGTTCGGACATTAG  500

seq1  TGTTCCTTTGAGGGAAAACAGTTGTTACAGTGAAAGTATTATCTGGCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTTGAGGGAAAACAGTTGTTACAGTGAAAGTATTATCTGGCACA  550

seq1  TAGTTAAGCCAGTAGCTTAAGTTTCCTGAAAACATTAATTATCCAGTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAGCCAGTAGCTTAAGTTTCCTGAAAACATTAATTATCCAGTCAT  600

seq1  CCTGTGAGTCACTGAAGTAATGAAATTCAAGATGGGTTGATTTGACATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAGTCACTGAAGTAATGAAATTCAAGATGGGTTGATTTGACATTG  650

seq1  TTAAGGGTCTTGAAAGAATGTGAAAGGGCCTGTGCTGATTTGAGGGATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGTCTTGAAAGAATGTGAAAGGGCCTGTGCTGATTTGAGGGATCA  700

seq1  GGCCAGCATGAGGTGTGTGGAGAATGCTACAGGCAAAAACGGTGAGTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCATGAGGTGTGTGGAGAATGCTACAGGCAAAAACGGTGAGTCAT  750

seq1  CTCCAGGCGGCTGTTGGCTGAGTCACTCCTCTGGCCTTCACAGTATCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGCGGCTGTTGGCTGAGTCACTCCTCTGGCCTTCACAGTATCTTG  800

seq1  TATTTCTCCAGGTGGTCATAGCCACTCTGTCTTTCCCCCGCATTCCAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCCAGGTGGTCATAGCCACTCTGTCTTTCCCCCGCATTCCAGAT  850

seq1  CCACCATCTTTTCCTGTCCTTCCTTTTAAATGACCTCTTTGGGTCTATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATCTTTTCCTGTCCTTCCTTTTAAATGACCTCTTTGGGTCTATAT  900

seq1  AGCTCTTTTTTCCTAATTCAAAACAACAACAAAAAGGATGTGTGTACAAA  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGCTCTTTTTTCCTAATTC-AAACAACAACAAAAAGGATGTGTGTACAAA  949

seq1  TGTCAAAGAAAGTTGATAAACAGACAAAATATGGAAGTATACCTAAAATT  1000
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGTC-AAGAAAGTTGATAAACAGAC-AAATATGGAAGTATACCTAAAATT  997

seq1  TTAAAAGTTTTTTACAAGTTTAAAGTTTTTTAAAAGTTTCAACATTGTGA  1050
      || |||||||||||| ||||| ||||||||| |||||||| |||||||||
seq2  TT-AAAGTTTTTTAC-AGTTT-AAGTTTTTT-AAAGTTTC-ACATTGTGA  1042

seq1  CAATATTTTTGAAACAGTTTAATAAATTATGAAATCATATTATGTAAATT  1100
      ||   ||||||||||||||||   ||| ||||||||||| ||||||||||
seq2  CATATTTTTTGAAACAGTTTA--TAATAATGAAATCATA-TATGTAAATT  1089

seq1  ATATTAGTGTGGAACTATAACTTAAATAAAATATAT  1136
      |||||||||| ||||||||   ||||| ||||||||
seq2  ATATTAGTGT-GAACTATA--CTAAAT-AAATATAT  1121