BAC Information

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BAC

Clone NameB6Ng01-115F01
Chromosome5 (Build37)
Map Location 95,761,431 - 95,762,497
singlet/doubletsinglet
Overlap geneLOC100041296
Upstream geneAA792892, LOC665521, LOC665551, LOC100041102, LOC665560, LOC100041115, LOC624507, LOC621203, LOC100041153, LOC665499, LOC624698, LOC100041179, LOC624655, LOC100041166, LOC665469, LOC622894, EG666121, LOC666125, EG666133, LOC100041253, LOC100041264, EG624049
Downstream geneEG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115F01.bB6Ng01-115F01.g
ACCDH920611DH920612
length1,0811,192
definitionDH920611|Mus musculus domesticus DNA, BAC clone: B6Ng01-115F01, 5' end.DH920612|Mus musculus domesticus DNA, BAC clone: B6Ng01-115F01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatgccaaggatagaacacagtaggaatggtttcagcatgatgc
taggagtgctgcccaggtgactttcatcttctgtttcatgctcttcagag
tagaaggatggagagcctggcaggtgttgttattgtttgtttctttgttt
gtgatttctgtctagttgagtgtttctctggtgttggctgaggctgagat
cctgctgccaagccctgttctctttctggccatgaaacttctagcccctt
tgctggtctgtttctaagagcttttattctggtggcttgcttccctctac
cacctatgcaggtgtagaagctgcttcacagttgtgcccttagtatttag
cattcacatcttcctagcccacacaattcctttgcattgctaaccctgag
cctccacagtaggaactgggaatgaacacttgtgagcctcagagcaaaac
ctgctttctgccccaatccaagaacagccatttttttccttgcttggcag
ttgtactcaaaaaggtacaggccagaaactgaagacttgaatccaaagga
actgttgagcttggctgataaatttttatgttgagatctttactcaattg
acttgagagtattggaggatgataaatacgaagcaacttgctttcttaaa
catgcagatatcctgttagacaggcaccatttgatagggatgatttcttt
tttccaatgtctcttttgaattctctattaaaaatctagtgtccaggtct
tcagtttcatttctttgatcaacctattttcctgccaacacaatgcagtt
ttcactatactatggctatgtagtataacttcagatcaaaaatggtgata
cttctagaacatcatatattatagaggattatggtcttcaggctcagttc
aaaggttgcctgtgagtgtctgtaattatcttagacaggtgatagcagat
cctctcagaggacggccatacctggatcctttatgtaagtagatctgtca
ttagcataatgtaggggtttgatgtctcctaatgagattgatcccaaatc
ctgtgtctggatgccctttcttcagtttttt
gaattcctgagatcctgtgtatgtcagagctcctggaagtcaagctctct
ctggaaccatgcgatcatggtgtgaccaagctcctgggaccctgaggacc
tgggcatgttagagcgtctgggagtggatttttttctgggtattgtgggg
ctggcttctgagttcacacccaaggtctgctcagggcacactggcccaga
ttggaagaaatccatgccactggtcagatggagttcctgggttcccgggt
cccactcgtctcagttacttcaggtgttggggcagattttgtgtcctcct
ctatgatcccgggagtgttagcacttagagtggatcttctctgggtgttg
tgggattggctgtggagttcacacccaagctctgctcaggacattggccc
agactggaaggaactggtgccactggtcaggcagagctctacatttgact
tttcaacagagactctaaaatatagaagggcctgaactgaacagatgtct
tgcatcttttatgagaccacagatgtcaatgtagactactatccctagca
gaactctctatcaccatagatggaaaagatattccaagtcaaaagcaaat
tttaaaaatatctattcaacaaatctagacctacagaaaattttagatga
aaaacttcagcccaatgggttaactacaacttaaaaaactacaggggggc
tagagagatggctcagcagttaagagcactggctgctcttccagaggttc
tgagttcaatttccatcaaccacttggtagttcacaatgatctataaagg
ggctcttatgccctcttctggcatgtcggtgcatatgcaacagagcactc
atacataaaaaaaaaataataaaaaatacaataaaatcatccatttcatg
tagataaaaaaaacacagacaataattccattacagattaccaaaataag
ggaagtacacacaatcacaacctctaacacaccagagagagagagagaga
gagagagagagagagagtaagtagttgattgctgaacttaccagttcagg
gggccaggttctcatactctgcttctcaaatttatcaactggtcgaggac
tagttggatatccaatttaatagagatttggcagttccagttaactgcgt
cgtttttttccacgttaaaggtgctttgtgggcagagcgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_95761431_95762497
seq2: B6Ng01-115F01.b_44_1106

seq1  GAATTCCATGCCAAGGATAGAACACAGTAGGAATGGTTTCAGCATGATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCCAAGGATAGAACACAGTAGGAATGGTTTCAGCATGATGC  50

seq1  TAGGAGTGCTGCCCAGGTGACTTTCATCTTCTGTTTCATGCTCTTCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTGCTGCCCAGGTGACTTTCATCTTCTGTTTCATGCTCTTCAGAG  100

seq1  TAGAAGGATGGAGAGCCTGGCAGGTGTTGTTATTGTTTGTTTCTTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGATGGAGAGCCTGGCAGGTGTTGTTATTGTTTGTTTCTTTGTTT  150

seq1  GTGATTTCTGTCTAGTTGAGTGTTTCTCTGGTGTTGGCTGAGGCTGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTCTGTCTAGTTGAGTGTTTCTCTGGTGTTGGCTGAGGCTGAGAT  200

seq1  CCTGCTGCCAAGCCCTGTTCTCTTTCTGGCCATGAAACTTCTAGCCCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGCCAAGCCCTGTTCTCTTTCTGGCCATGAAACTTCTAGCCCCTT  250

seq1  TGCTGGTCTGTTTCTAAGAGCTTTTATTCTGGTGGCTTGCTTCCCTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTCTGTTTCTAAGAGCTTTTATTCTGGTGGCTTGCTTCCCTCTAC  300

seq1  CACCTATGCAGGTGTAGAAGCTGCTTCACAGTTGTGCCCTTAGTATTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATGCAGGTGTAGAAGCTGCTTCACAGTTGTGCCCTTAGTATTTAG  350

seq1  CATTCACATCTTCCTAGCCCACACAATTCCTTTGCATTGCTAACCCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACATCTTCCTAGCCCACACAATTCCTTTGCATTGCTAACCCTGAG  400

seq1  CCTCCACAGTAGGAACTGGGAATGAACACTTGTGAGCCTCAGAGCAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACAGTAGGAACTGGGAATGAACACTTGTGAGCCTCAGAGCAAAAC  450

seq1  CTGCTTTCTGCCCCAATCCAAGAACAGCCATTTTTTTCCTTGCTTGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTCTGCCCCAATCCAAGAACAGCCATTTTTTTCCTTGCTTGGCAG  500

seq1  TTGTACTCAAAAAGGTACAGGCCAGAAACTGAAGACTTGAATCCAAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTCAAAAAGGTACAGGCCAGAAACTGAAGACTTGAATCCAAAGGA  550

seq1  ACTGTTGAGCTTGGCTGATAAATTTTTATGTTGAGATCTTTACTCAATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGAGCTTGGCTGATAAATTTTTATGTTGAGATCTTTACTCAATTG  600

seq1  ACTTGAGAGTATTGGAGGATGATAAATACGAAGCAACTTGCTTTCTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGAGTATTGGAGGATGATAAATACGAAGCAACTTGCTTTCTTAAA  650

seq1  CATGCAGATATCCTGTTAGACAGGCACCATTTGATAGGGATGATTTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGATATCCTGTTAGACAGGCACCATTTGATAGGGATGATTTCTTT  700

seq1  TTTCCAATGTCTCTTTTGAATTCTCTATTAAAAATCTAGTGTCCAGGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATGTCTCTTTTGAATTCTCTATTAAAAATCTAGTGTCCAGGTCT  750

seq1  TCAGTTTCATTTCTTTGATCAACCTATTTTCCTGCCAACACAATGCAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCATTTCTTTGATCAACCTATTTTCCTGCCAACACAATGCAGTT  800

seq1  TTCACTATACTATGGCTATGTAGTATAACTTCAGATCAAAAATGGTGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTATACTATGGCTATGTAGTATAACTTCAGATCAAAAATGGTGATA  850

seq1  CTTCTAGAACATCATATATTATAGAGGATTATGGTCTTCAGGCTCAGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGAACATCATATATTATAGAGGATTATGGTCTTCAGGCTCAGTTC  900

seq1  AAAGGTTGCCTGTGAGTGTCTGTAATTATCTTAGACAGGTGATAGCAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTGCCTGTGAGTGTCTGTAATTATCTTAGACAGGTGATAGCAGAT  950

seq1  CCTCTCAGAGGACGGCCATACCTGGATCCTTTATGTAAGTAGATCTTGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCTCTCAGAGGACGGCCATACCTGGATCCTTTATGTAAGTAGATC-TGTC  999

seq1  ATTAGCAATAATGTAGGGGTTTGATGTCTCCTAATGAGATTGATCCCAAA  1050
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGC-ATAATGTAGGGGTTTGATGTCTCCTAATGAGATTGATCCCAAA  1048

seq1  ATCCCTGTGTCTGGATG  1067
         ||||||||||||||
seq2  --TCCTGTGTCTGGATG  1063