BAC Information

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BAC

Clone NameB6Ng01-115F08
Chromosome5 (Build37)
Map Location 131,573,355 - 131,749,141
singlet/doubletdoublet
Overlap geneWbscr17
Upstream geneTpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik, Caln1
Downstream geneAuts2, 4930563F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115F08.bB6Ng01-115F08.g
ACCDH920625DH920626
length1,189952
definitionDH920625|Mus musculus domesticus DNA, BAC clone: B6Ng01-115F08, 5' end.DH920626|Mus musculus domesticus DNA, BAC clone: B6Ng01-115F08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,747,946 - 131,749,141)(131,573,355 - 131,574,304)
sequence
gaattctgccagccaaggcttacaaaatacagtcaaaagtttaactttag
cttataccaacttcacagtcctatgggccttctggctaatttggaaattt
tgtgactgcttctataaaactctctttagagagcaggctcttataatttc
tccaaaagctatgtatttgccttatgattgctctctgacctctctttgtc
atcacacaccaaggaggccttgctctggcaagtcactccataaaattaat
gtatagtataaaatgctctctccattaatatttacccatccatctccagt
ctcatcctaggaccctgtataaggtaaaggtcctgcagttattcttaact
tatagggtcccctgtatataggaggggcccaacatctgcctctaaccaaa
tactgtttcctaccaccaactattcttacaggaattcctagctcattctt
actaaactcttgctcatcctgaatgactatgactatcaacaaaatctgga
ttttctacaaatgattcctgttgctgcaatgcattaatcacacccccaaa
tgtttcatccttgatcagtcaaggtagtaatgattttatcagaatcagca
ataagggccaagaaggccatgaggaagaaggaaagaacacacgttactcc
accgcagatagcaattgctgagcctgtgcaagttttacgggctccgtgcc
agtgacctctgggagactgggttctgggtaacacacatctcaggtctgca
catactttctgccctttgtgctgcatgtcacacagactccaccggagttg
gtgtggcaccaggtgttgatgctgggaactgaattggggtcccctgtaag
aggagtatgtgctcttaatcaatgagccatctctccatctcctagaatgt
cttcaggtataatttggctttaattttgttcacttgagacatctttattt
tgctttcataagctgatggattatttttaccatatgcagaagtcatttag
gacttttaagatattgttataccgtctctggtttccatagcttcttgaca
gaaattcgctgttttcttttgcttattgtttctgtatttaacatgtcact
tccttcctctaatttcagaagttatgatgggtatctttaattttatttcc
agcttgagttgtggacttgtatctatcatgatattcaat
gaattcactaacacagaagatggctatcttacatattttattctctgagc
atcttccagttttacagacttaaataatgtactagttgactatggaggca
agggctggagtgaggggttgggtggaaaggggcaagagtaagaagcttca
agaagaatggaggagatttaagaggaatgtttttgtggtattggaaagca
cttacaaggcagcactgtggtgagataaaaggaaggaaacaagaaagcca
atgacaagagaagagacggcatgtttctgaataccaaagtgctgaactca
atacactgccccaagttgtgtgtccataagaggctccgggaaaagaaaaa
tctctatggctttcaattctactgtcaaaaaattcctgctttctgcttca
tccgttcagagttccccccttgtgcgccaatgagatggttcagtgggtaa
aagcactcgaccccaaacctgactacctgagtcccatccctgacactcgt
gtgggagaactgacccacacaattgtcctctgattgccacacatgttctg
tggcacacacacacatgcccacaaataagtaagtcaataaatacaccttc
caaacagtaataagtacaagttacagtatctgacgaccaaggctcataat
gtctacagtggttatcccaaagtaagatggcattttccatcctgcccata
tgacaagcagccaaggcctgggaagatggctcactggctgaagtgcctgc
catgctgtcatgagcacatgaatttcaaccctcagaactaatttatctaa
aaaataatgctcagcaaaaactttgtaatctcagttctgggggaagtaga
gacaggaagatctcaagggtttttagctagcaagtatcacctaatttcac
aagtttcaaaataatgagaagctctatctcatagaaagaaagaaagaaag
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_131747946_131749141
seq2: B6Ng01-115F08.b_46_1234 (reverse)

seq1  ATTGAATATCAAATTGATAGATACAAGGTCAACAAAATCCAAGCTGG--A  48
      |||||||||||   |||||||||||| |||  || ||  ||||||||  |
seq2  ATTGAATATCA---TGATAGATACAA-GTC--CACAACTCAAGCTGGAAA  44

seq1  TAAATATTAAGATAACCACATCATAACTTCTTGAAATTAGAGGAGGGAAG  98
      ||||  | ||||||  | |||||||||||| ||||||||||||| |||||
seq2  TAAAATTAAAGATA--CCCATCATAACTTC-TGAAATTAGAGGAAGGAAG  91

seq1  TGACATGTTAAATACCAAGAAACAAT-AGC-AGAGAAAACAGCGAATTTC  146
      |||||||||||||||  ||||||||| ||| | |||||||||||||||||
seq2  TGACATGTTAAATAC--AGAAACAATAAGCAAAAGAAAACAGCGAATTTC  139

seq1  TTGTC-AGAAGCTATGGAAACCAGAAGACGGTATAACAATATCTTTAAAA  195
       |||| |||||||||||||||||| |||||||||||||||||| ||||||
seq2  -TGTCAAGAAGCTATGGAAACCAG-AGACGGTATAACAATATC-TTAAAA  186

seq1  GTCCTAAATGACTTCTGCATATGGT-AAAATAATCCATCAGC-TATGAAA  243
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  GTCCTAAATGACTTCTGCATATGGTAAAAATAATCCATCAGCTTATGAAA  236

seq1  GCAAAATAAAGATGTCTCAAGTGAACAAAATTAAAGCCAAATTATACCTG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATAAAGATGTCTCAAGTGAACAAAATTAAAGCCAAATTATACCTG  286

seq1  AAGACATTCTAGGAGATGGAGAGATGGCTCATTGATTAAGAGCACATACT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATTCTAGGAGATGGAGAGATGGCTCATTGATTAAGAGCACATACT  336

seq1  CCTCTTACAGGGGACCCCAATTCAGTTCCCAGCATCAACACCTGGTGCCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTACAGGGGACCCCAATTCAGTTCCCAGCATCAACACCTGGTGCCA  386

seq1  CACCAACTCCGGTGGAGTCTGTGTGACATGCAGCACAAAGGGCAGAAAGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACTCCGGTGGAGTCTGTGTGACATGCAGCACAAAGGGCAGAAAGT  436

seq1  ATGTGCAGACCTGAGATGTGTGTTACCCAGAACCCAGTCTCCCAGAGGTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAGACCTGAGATGTGTGTTACCCAGAACCCAGTCTCCCAGAGGTC  486

seq1  ACTGGCACGGAGCCCGTAAAACTTGCACAGGCTCAGCAATTGCTATCTGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCACGGAGCCCGTAAAACTTGCACAGGCTCAGCAATTGCTATCTGC  536

seq1  GGTGGAGTAACGTGTGTTCTTTCCTTCTTCCTCATGGCCTTCTTGGCCCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGTAACGTGTGTTCTTTCCTTCTTCCTCATGGCCTTCTTGGCCCT  586

seq1  TATTGCTGATTCTGATAAAATCATTACTACCTTGACTGATCAAGGATGAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTGATTCTGATAAAATCATTACTACCTTGACTGATCAAGGATGAA  636

seq1  ACATTTGGGGGTGTGATTAATGCATTGCAGCAACAGGAATCATTTGTAGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGGGGGTGTGATTAATGCATTGCAGCAACAGGAATCATTTGTAGA  686

seq1  AAATCCAGATTTTGTTGATAGTCATAGTCATTCAGGATGAGCAAGAGTTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAGATTTTGTTGATAGTCATAGTCATTCAGGATGAGCAAGAGTTT  736

seq1  AGTAAGAATGAGCTAGGAATTCCTGTAAGAATAGTTGGTGGTAGGAAACA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAATGAGCTAGGAATTCCTGTAAGAATAGTTGGTGGTAGGAAACA  786

seq1  GTATTTGGTTAGAGGCAGATGTTGGGCCCCTCCTATATACAGGGGACCCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGGTTAGAGGCAGATGTTGGGCCCCTCCTATATACAGGGGACCCT  836

seq1  ATAAGTTAAGAATAACTGCAGGACCTTTACCTTATACAGGGTCCTAGGAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTAAGAATAACTGCAGGACCTTTACCTTATACAGGGTCCTAGGAT  886

seq1  GAGACTGGAGATGGATGGGTAAATATTAATGGAGAGAGCATTTTATACTA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGGAGATGGATGGGTAAATATTAATGGAGAGAGCATTTTATACTA  936

seq1  TACATTAATTTTATGGAGTGACTTGCCAGAGCAAGGCCTCCTTGGTGTGT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAATTTTATGGAGTGACTTGCCAGAGCAAGGCCTCCTTGGTGTGT  986

seq1  GATGACAAAGAGAGGTCAGAGAGCAATCATAAGGCAAATACATAGCTTTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAAAGAGAGGTCAGAGAGCAATCATAAGGCAAATACATAGCTTTT  1036

seq1  GGAGAAATTATAAGAGCCTGCTCTCTAAAGAGAGTTTTATAGAAGCAGTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAATTATAAGAGCCTGCTCTCTAAAGAGAGTTTTATAGAAGCAGTC  1086

seq1  ACAAAATTTCCAAATTAGCCAGAAGGCCCATAGGACTGTGAAGTTGGTAT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTTCCAAATTAGCCAGAAGGCCCATAGGACTGTGAAGTTGGTAT  1136

seq1  AAGCTAAAGTTAAACTTTTGACTGTATTTTGTAAGCCTTGGCTGGCAGAA  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAAGTTAAACTTTTGACTGTATTTTGTAAGCCTTGGCTGGCAGAA  1186

seq1  TTC  1196
      |||
seq2  TTC  1189

seq1: chr5_131573355_131574304
seq2: B6Ng01-115F08.g_69_1020

seq1  GAATTCACTAACACAGAAGATGGCTATCTTACATATTTTATTCTCTGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAACACAGAAGATGGCTATCTTACATATTTTATTCTCTGAGC  50

seq1  ATCTTCCAGTTTTACAGACTTAAATAATGTACTAGTTGACTATGGAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCAGTTTTACAGACTTAAATAATGTACTAGTTGACTATGGAGGCA  100

seq1  AGGGCTGGAGTGAGGGGTTGGGTGGAAAGGGGCAAGAGTAAGAAGCTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGGAGTGAGGGGTTGGGTGGAAAGGGGCAAGAGTAAGAAGCTTCA  150

seq1  AGAAGAATGGAGGAGATTTAAGAGGAATGTTTTTGTGGTATTGGAAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATGGAGGAGATTTAAGAGGAATGTTTTTGTGGTATTGGAAAGCA  200

seq1  CTTACAAGGCAGCACTGTGGTGAGATAAAAGGAAGGAAACAAGAAAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAGGCAGCACTGTGGTGAGATAAAAGGAAGGAAACAAGAAAGCCA  250

seq1  ATGACAAGAGAAGAGACGGCATGTTTCTGAATACCAAAGTGCTGAACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAGAGAAGAGACGGCATGTTTCTGAATACCAAAGTGCTGAACTCA  300

seq1  ATACACTGCCCCAAGTTGTGTGTCCATAAGAGGCTCCGGGAAAAGAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTGCCCCAAGTTGTGTGTCCATAAGAGGCTCCGGGAAAAGAAAAA  350

seq1  TCTCTATGGCTTTCAATTCTACTGTCAAAAAATTCCTGCTTTCTGCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATGGCTTTCAATTCTACTGTCAAAAAATTCCTGCTTTCTGCTTCA  400

seq1  TCCGTTCAGAGTTCCCCCCTTGTGCGCCAATGAGATGGTTCAGTGGGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTCAGAGTTCCCCCCTTGTGCGCCAATGAGATGGTTCAGTGGGTAA  450

seq1  AAGCACTCGACCCCAAACCTGACTACCTGAGTCCCATCCCTGACACTCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTCGACCCCAAACCTGACTACCTGAGTCCCATCCCTGACACTCGT  500

seq1  GTGGGAGAACTGACCCACACAATTGTCCTCTGATTGCCACACATGTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGAACTGACCCACACAATTGTCCTCTGATTGCCACACATGTTCTG  550

seq1  TGGCACACACACACATGCCCACAAATAAGTAAGTCAATAAATACACCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACACACACACATGCCCACAAATAAGTAAGTCAATAAATACACCTTC  600

seq1  CAAACAGTAATAAGTACAAGTTACAGTATCTGACGACCAAGGCTCATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGTAATAAGTACAAGTTACAGTATCTGACGACCAAGGCTCATAAT  650

seq1  GTCTACAGTGGTTATCCCAAAGTAAGATGGCATTTTCCATCCTGCCCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGTGGTTATCCCAAAGTAAGATGGCATTTTCCATCCTGCCCATA  700

seq1  TGACAAGCAGCCAAGGCCTGGGAAGATGGCTCACTGGCTGAAGTGCCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGCAGCCAAGGCCTGGGAAGATGGCTCACTGGCTGAAGTGCCTGC  750

seq1  CATGCTGTCATGAGCACATGAA-TTCAACCCTCAGAACTAATTTATCTAA  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CATGCTGTCATGAGCACATGAATTTCAACCCTCAGAACTAATTTATCTAA  800

seq1  AAAATAATGCTCAGCAAAAAC-TTGTAATCCCAGTTCTGGGGGAAGTAGA  848
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  AAAATAATGCTCAGCAAAAACTTTGTAATCTCAGTTCTGGGGGAAGTAGA  850

seq1  GACAGGAAGATCTCAAGGGTTTTTAGCTAGCAAGTATCACCT-ATTTCAC  897
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GACAGGAAGATCTCAAGGGTTTTTAGCTAGCAAGTATCACCTAATTTCAC  900

seq1  AAGTTTCAAAATAATGAGAAGCTCTATCTCAAAAGAAAGAAAGAAAGAAA  947
      |||||||||||||||||||||||||||||| | |||||||||||||||||
seq2  AAGTTTCAAAATAATGAGAAGCTCTATCTC-ATAGAAAGAAAGAAAGAAA  949

seq1  GAA  950
      |||
seq2  GAA  952