BAC Information

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BAC

Clone NameB6Ng01-115F15
Chromosome5 (Build37)
Map Location 15,562,252 - 15,563,378
singlet/doubletsinglet
Overlap geneCacna2d1
Upstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781
Downstream geneLOC668121, Hgf, EG668131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115F15.bB6Ng01-115F15.g
ACCDH920639DH920640
length1,2201,125
definitionDH920639|Mus musculus domesticus DNA, BAC clone: B6Ng01-115F15, 5' end.DH920640|Mus musculus domesticus DNA, BAC clone: B6Ng01-115F15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtttaccttttcaggtgtgttagggtgtcctggattgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggcttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctcta
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctttcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatgtcgccgcctgagaagctctgtggctcttgtcaggaaggaggc
cggccctctggagctgaggatggcgctgcctcagaagctctgtggatctt
gccgggaaggtggctggttgtctggagctgaagatggcgccacccagaag
ctctgcgactctcgcccgtcctaggctggcactctgtattccacacggtc
acccgtgcagcctgccctccgcggagtcccggagccaagaaggctcccgc
cagcgcctgtgccacaaacctctcaggccgggcagacccccgtgctctca
ccaggaaggtggccggctgtctggagctgaagatggcgccgcccagaagc
tctgcgactctcgcccgtcccagaaacggctggcactctgtattccacac
ggtcacccgtgcagcctgccctccgcggagtcccggagccaagaaggctc
ccgccggcgcctgtgccacaaacctctcagccaggcagacccccgtgctc
tcaccaggaagtggccgctgtctgagctgaagatgcgctgcccagagctc
tgcgactctcgccgtcctagaaacgctggcactctgtatcacacgtcacc
cgtgcagcttgcctccgcgagtcccgagcagagctccgtcagcgctggtc
acaactttcagcggcaaccccgtgctctcacagaaggtggcggctgctct
gttgcaatctcaattgactttgaataacaaagtgtggccaaggaacacga
aatgtggtaagagttataga

gaattcatattcatacacatacattcttaagtagaatgttagctaccagt
gaagctgtgagaactaggaaagtatgttgccaatacacaggaggtagtgg
cgaactgccttctttgataatagggggctttgaacccagttgtagtcaca
aagagtacacattgaactaaataggagtgtgtcaaagattcacagctata
gacatacaatgtgcaattacgtctcttttgtaaattcattcaaatcctcc
ttgcttccttcaagaaggtgtctaattctgtgccttcctgctatttaatc
ctggtcccttaaaggctcacttactagaagggttgtggtacttgaggcgg
cagaattttaacttggcacattgagctaactgattccagtgtcagaaatg
ctctacgatgttaacctcattaaaaagggtcagttatcttgacagccttt
gctgttcagtatctgcatgttaatcttgtatgcccatagttttccctagc
ccttctgccttttgctgtcacaaagtggtactgtgttatagcgcaacagt
gactcagtggtgttcatacagtgcaaatcactgaaccatctgtcctgata
aatctcaaaactctctccccagagcaaagtgtctgagtcacagtacagtt
atgggtttgtttgcttttcctgggcatgattaatgacaggtggcctgggt
gttctttttgaaaagatttatttttccaactgtttgtagtttttttattt
gataaaggtgtatatgtttacagtatataacacaattctgtatacagata
tatgctagaatggataacccttggataattaaatgtatatatctatcctg
tattgatgctaagtcttgtaaaatctactctcagtggtcttcagaagtct
aatacattgttattagctgtagttggtatgcttaatataatatattttca
gccaacttcctagatttaccaccgaatctttaattttttgaattggcaac
atggaagtgtttcattacaccttggcatatagatttctttactcaaggct
gggaacgatggtcagtcatcaaccatttcaatttttatctagggatccac
atggggttccctttacccacactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15562252_15563378
seq2: B6Ng01-115F15.g_69_1193

seq1  GAATTCATATTCATACACATACATTCTTAAGTAGAATGTTAGCTACCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTCATACACATACATTCTTAAGTAGAATGTTAGCTACCAGT  50

seq1  GAAGCTGTGAGAACTAGGAAAGTATGTTGCCAATACACAGGAGGTAGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGTGAGAACTAGGAAAGTATGTTGCCAATACACAGGAGGTAGTGG  100

seq1  CGAACTGCCTTCTTTGATAATAGGGGGCTTTGAACCCAGTTGTAGTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACTGCCTTCTTTGATAATAGGGGGCTTTGAACCCAGTTGTAGTCACA  150

seq1  AAGAGTACACATTGAACTAAATAGGAGTGTGTCAAAGATTCACAGCTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTACACATTGAACTAAATAGGAGTGTGTCAAAGATTCACAGCTATA  200

seq1  GACATACAATGTGCAATTACGTCTCTTTTGTAAATTCATTCAAATCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATACAATGTGCAATTACGTCTCTTTTGTAAATTCATTCAAATCCTCC  250

seq1  TTGCTTCCTTCAAGAAGGTGTCTAATTCTGTGCCTTCCTGCTATTTAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCTTCAAGAAGGTGTCTAATTCTGTGCCTTCCTGCTATTTAATC  300

seq1  CTGGTCCCTTAAAGGCTCACTTACTAGAAGGGTTGTGGTACTTGAGGCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCCTTAAAGGCTCACTTACTAGAAGGGTTGTGGTACTTGAGGCGG  350

seq1  CAGAATTTTAACTTGGCACATTGAGCTAACTGATTCCAGTGTCAGAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTTTAACTTGGCACATTGAGCTAACTGATTCCAGTGTCAGAAATG  400

seq1  CTCTACGATGTTAACCTCATTAAAAAGGGTCAGTTATCTTGACAGCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACGATGTTAACCTCATTAAAAAGGGTCAGTTATCTTGACAGCCTTT  450

seq1  GCTGTTCAGTATCTGCATGTTAATCTTGTATGCCCATAGTTTTCCCTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCAGTATCTGCATGTTAATCTTGTATGCCCATAGTTTTCCCTAGC  500

seq1  CCTTCTGCCTTTTGCTGTCACAAAGTGGTACTGTGTTATAGCGCAACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGCCTTTTGCTGTCACAAAGTGGTACTGTGTTATAGCGCAACAGT  550

seq1  GACTCAGTGGTGTTCATACAGTGCAAATCACTGAACCATCTGTCCTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGTGGTGTTCATACAGTGCAAATCACTGAACCATCTGTCCTGATA  600

seq1  AATCTCAAAACTCTCTCCCCAGAGCAAAGTGTCTGAGTCACAGTACAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAAAACTCTCTCCCCAGAGCAAAGTGTCTGAGTCACAGTACAGTT  650

seq1  ATGGGTTTGTTTGCTTTTCCTGGGCATGATTAATGACAGGTGGCCTGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTTGTTTGCTTTTCCTGGGCATGATTAATGACAGGTGGCCTGGGT  700

seq1  GTTCTTTTTGAAAAGATTTATTTTTCCAACTGTTTGTAG-TTTTTTATTT  749
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTTCTTTTTGAAAAGATTTATTTTTCCAACTGTTTGTAGTTTTTTTATTT  750

seq1  GATAAAGGTGTATATGTTTACAGTATATAACACAATTCTGTATACAGATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGGTGTATATGTTTACAGTATATAACACAATTCTGTATACAGATA  800

seq1  TATGCTAGAATGGATAACCCTTGGATAATTAAATGTATATATCTATCCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTAGAATGGATAACCCTTGGATAATTAAATGTATATATCTATCCTG  850

seq1  TATTGATGCTAAGTCTTGTAAAATCTACTCTCAGTGGTCTTCAGAAGTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATGCTAAGTCTTGTAAAATCTACTCTCAGTGGTCTTCAGAAGTCT  900

seq1  AATACATTGTTATTAGCTGTAGTT-GTATGCTTTATATAATATATTTTCA  948
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  AATACATTGTTATTAGCTGTAGTTGGTATGCTTAATATAATATATTTTCA  950

seq1  GCCAACTTCCTAGATTTAACAACCGATCCTTTAATTTTTTGATATGGCAA  998
      ||||||||||||||||| || |||||  ||||||||||||||  ||||||
seq2  GCCAACTTCCTAGATTT-ACCACCGAATCTTTAATTTTTTGAATTGGCAA  999

seq1  CATGGAAGTGTTACATTACA-CTTGGCATATAAGATTTTCTTTTACTCAG  1047
      |||||||||||| ||||||| |||||||||| ||||||   |||||||| 
seq2  CATGGAAGTGTTTCATTACACCTTGGCATAT-AGATTT--CTTTACTCAA  1046

seq1  GGCT-GGAACGATGTTCAGTCATCAAAACCATTTC-ATATTTATCTAGAG  1095
      |||| ||||||||| |||||||||  ||||||||| || ||||||||| |
seq2  GGCTGGGAACGATGGTCAGTCATC--AACCATTTCAATTTTTATCTAG-G  1093

seq1  GATCCACAATGGGTTCCCCTTACCCACACTGG  1127
      ||||||||  |||||||| |||||||||||||
seq2  GATCCACATGGGGTTCCCTTTACCCACACTGG  1125


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