BAC Information

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BAC

Clone NameB6Ng01-115G11
Chromosome5 (Build37)
Map Location 147,849,446 - 147,977,336
singlet/doubletdoublet
Overlap geneLnx2, Rpo1-3
Upstream geneLOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8, Wasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3
Downstream geneGsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3, Flt1, LOC100039825, Pomp, Slc46a3, C130038G02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115G11.bB6Ng01-115G11.g
ACCDH920679DH920680
length1,0661,048
definitionDH920679|Mus musculus domesticus DNA, BAC clone: B6Ng01-115G11, 5' end.DH920680|Mus musculus domesticus DNA, BAC clone: B6Ng01-115G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,849,446 - 147,850,515)(147,976,284 - 147,977,336)
sequence
gaattccaggccagtcagggccatccatgctctttggagagcctgtctct
aaacaaacaagccaagccaacactgagaggagatagctccaccaaatgct
tgcttgccttacaagccggaagatctgagttaaatcccggaactcatatt
aaaacaaagcgggtgtggtggcacatgtttctaaccccagagctggggtt
actgagccgggcagcaaggcagccccccaccccccgaagcctgctgacca
gtgagaacccctgcctcagagacaagcaaaggaaataaggagcaggcaga
cagtgtctcagcaacaccacaccacaccacaccaggctgtccttgggctt
gacatgcacgtgtgcacacagaccaaaacaaaaggaccccaaacctccaa
gaaccaggtgtgggacagggtcatcccaagagaaccacgtacagcccagc
tattcagaagctgaggcaagtgcatcatttgacttcgggagcctgaatct
ggcttaggtagcacaaacatcaaagcccctgtgtgtctatgtgtccttgg
aaatggagcactcaatagtaacacagactccttcctgcttgcactgcagg
ggcagcctagcgcatatgggaagctagcacagaggactgaaagcagaaag
taaagtcaacagactatagacatgcacgcacggctgagaccacactggtc
caaagcagcagtggtcgggacagtgcagccagccacaggctgggcgctgc
acggggccacaccaacccccgatgaaaaagaaaccaaagggctcaggtaa
catcaaagagcccaaacacaagttctcctttcctgctggctatgtacctg
ctccatgaagggaatcctgctctctaaaggaaatcacatgcaaagtaact
agttttaggctacggggacatctttccctgctacgagtgcacaggggcgt
cagagacatggcgcagcagaagcactgtgcattattattgtatgcatcgt
ggtaggagatggcaaagggatgcttgctaagcccgtgctgagactgagca
gtggagtggcctcagg
gaattccattgctagtggtcttcaaaagggtccaggtttgtgaatataag
tggtccaaggtaagagaggaagttggttaactcctgcaaggcgatggtca
ccgggacgtggctggtcctctgctctgcagcaccggaagttctggtgtct
gatggaattaatcaaagtcgcatgttctgactggtctcaatgaacatcgc
aacagacaggcgcattaaactagaacgaatgttttggatttcggatctgt
gtttttgtttttgtttttttttagaagttgtctccaagcgagataggaac
ctgctcagcaatccattcctccctgacttggagcgaagcctttaggtgct
tgacaggatggagtctcttctcagaccacagacaatcacatgtcaccttt
gtccttaccagggtgtcaaagactctgtaagagggtaagtgtttctaagt
atcctctgtactgaggcagacagaatgactgctctgccatctgctggctg
agggacactgtgcggacaaccttgccctttctgccccctcagtaaagtgg
gtgtgtggtggtcacactcccttctccacagttttggttcctgcagcctt
agccatttatgctcagatgccatcagaaatcattaatcgggaaaccgcag
aaataaacaccgggagttttagattgcagaccattctgggacgagtgata
aagttgtgttttttttttttttttttgtctcttgccagtgtatccatact
gtatgggctacctgaccggcacgacacagtctgcttggctgagggatcta
caggcatgatgcgttggcacctgtgctcaagggactcttaaaggattcat
ttattttatgtacgtgagtacactgtcacttctattcagacacaccagaa
gagggcatcagatcccattacagatggttgtgggccaccatgtggttgct
gggagttgaactcaggacctctgaagagagtcagtgctcttaacaactgg
catttcttccagccctagttcagggactcttattttagtatcatgatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_147849446_147850515
seq2: B6Ng01-115G11.b_44_1109

seq1  GAATTCCAGGCCAGTCAGGGCCATCCATGCTCTTTGGAGAGCCTGTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGTCAGGGCCATCCATGCTCTTTGGAGAGCCTGTCTCT  50

seq1  AAACAAACAAGCCAAGCCAACACTGAGAGGAGATAGCTCCACCAAATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAGCCAAGCCAACACTGAGAGGAGATAGCTCCACCAAATGCT  100

seq1  TGCTTGCCTTACAAGCCGGAAGATCTGAGTTAAATCCCGGAACTCATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCCTTACAAGCCGGAAGATCTGAGTTAAATCCCGGAACTCATATT  150

seq1  AAAACAAAGCGGGTGTGGTGGCACATGTTTCTAACCCCAGAGCTGGGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGCGGGTGTGGTGGCACATGTTTCTAACCCCAGAGCTGGGGTT  200

seq1  ACTGAGCCGGGCAGCAAGGCAGCCCCCCACCCCCCGAAGCCTGCTGACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCCGGGCAGCAAGGCAGCCCCCCACCCCCCGAAGCCTGCTGACCA  250

seq1  GTGAGAACCCCTGCCTCAGAGACAAGCAAAGGAAATAAGGAGCAGGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAACCCCTGCCTCAGAGACAAGCAAAGGAAATAAGGAGCAGGCAGA  300

seq1  CAGTGTCTCAGCAACACCACACCACACCACACCAGGCTGTCCTTGGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTCAGCAACACCACACCACACCACACCAGGCTGTCCTTGGGCTT  350

seq1  GACATGCACGTGTGCACACAGACCAAAACAAAAGGACCCCAAACCTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGCACGTGTGCACACAGACCAAAACAAAAGGACCCCAAACCTCCAA  400

seq1  GAACCAGGTGTGGGACAGGGTCATCCCAAGAGAACCACGTACAGCCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGGTGTGGGACAGGGTCATCCCAAGAGAACCACGTACAGCCCAGC  450

seq1  TATTCAGAAGCTGAGGCAAGTGCATCATTTGACTTCGGGAGCCTGAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGAAGCTGAGGCAAGTGCATCATTTGACTTCGGGAGCCTGAATCT  500

seq1  GGCTTAGGTAGCACAAACATCAAAGCCCCTGTGTGTCTATGTGTCCTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGGTAGCACAAACATCAAAGCCCCTGTGTGTCTATGTGTCCTTGG  550

seq1  AAATGGAGCACTCAATAGTAACACAGACTCCTTCCTGCTTGCACTGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGCACTCAATAGTAACACAGACTCCTTCCTGCTTGCACTGCAGG  600

seq1  GGCAGCCTAGCGCATATGGGAAGCTAGCACAGAGGACTGAAAGCAGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCTAGCGCATATGGGAAGCTAGCACAGAGGACTGAAAGCAGAAAG  650

seq1  TAAAGTCAACAGACTATAGACATGCACGCACGGCTGAGACCACACTGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCAACAGACTATAGACATGCACGCACGGCTGAGACCACACTGGTC  700

seq1  CAAAGCAGCAGTGGTCGGGACAGTGCAGCCAGCCACAGGCTGGGCGCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAGCAGTGGTCGGGACAGTGCAGCCAGCCACAGGCTGGGCGCTGC  750

seq1  ACGGGGCCACACCAACCCCCGATGAAAAAGAAACCAAAGGGCTCAGGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGCCACACCAACCCCCGATGAAAAAGAAACCAAAGGGCTCAGGTAA  800

seq1  CATCAAAGAGCCCAAACACAAGTTCTCCTTTCCTGCTGGCTATGTACCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAGAGCCCAAACACAAGTTCTCCTTTCCTGCTGGCTATGTACCTG  850

seq1  CTCCATGAAGGGAATCCTGCTCTCTAAAGGAAATCACATGCAAAGTAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGAAGGGAATCCTGCTCTCTAAAGGAAATCACATGCAAAGTAACT  900

seq1  AGTTTTAGGCTACGGGGACATCTTTCCCTGCTACGAGGTGCACAGGGGCG  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGTTTTAGGCTACGGGGACATCTTTCCCTGCTACGA-GTGCACAGGGGCG  949

seq1  TCAGGAGACATGGCGCAGCAGAAGGCACTGTGCATTATTA-TGTATGCAT  999
      ||| ||||||||||||||||||| |||||||||||||||| |||||||||
seq2  TCA-GAGACATGGCGCAGCAGAA-GCACTGTGCATTATTATTGTATGCAT  997

seq1  CGTGGTAGGGAGATGGCAAAGGGATGCTTGCTAAGCCCCGTGCTGGAGAC  1049
      ||||||| ||||||||||||||||||||||||||| |||||||| |||||
seq2  CGTGGTA-GGAGATGGCAAAGGGATGCTTGCTAAG-CCCGTGCT-GAGAC  1044

seq1  TGAAGCAGT-GAGTGG-CTCAGG  1070
      || |||||| |||||| ||||||
seq2  TG-AGCAGTGGAGTGGCCTCAGG  1066

seq1: chr5_147976284_147977336
seq2: B6Ng01-115G11.g_69_1116 (reverse)

seq1  GATCATTGATACATAAAATAAGAGTCCCTTGAACTAGGGCTGG-AGAGAT  49
      ||||| |||||| ||||||||||||||| |||||||||||||| ||| ||
seq2  GATCA-TGATAC-TAAAATAAGAGTCCC-TGAACTAGGGCTGGAAGAAAT  47

seq1  GGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAA  99
      |   |||| |||||||||||||||| ||||| ||||||||||||||||||
seq2  G--CCAGTTGTTAAGAGCACTGACT-CTCTT-CAGAGGTCCTGAGTTCAA  93

seq1  CTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATG  149
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTCCCAGCAACCACATGGTGGCCCACAACCATCTGTAATGGGATCTGATG  143

seq1  CCCTCTTCTGGTGTGTCTGAATAG-AGTGACAGTGTACTCACGTACATAA  198
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCCTCTTCTGGTGTGTCTGAATAGAAGTGACAGTGTACTCACGTACATAA  193

seq1  AATAAATGAATCCTTTAAGAGTCCCTTGAGCACAGGTGCCAACGCATCAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGAATCCTTTAAGAGTCCCTTGAGCACAGGTGCCAACGCATCAT  243

seq1  GCCTGTAGATCCCTCAGCCAAGCAGACTGTGTCGTGCCGGTCAGGTAGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTAGATCCCTCAGCCAAGCAGACTGTGTCGTGCCGGTCAGGTAGCC  293

seq1  CATACAGTATGGATACACTGGCAAGAGACAAAAAAAAAAAAAAAAAACAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGTATGGATACACTGGCAAGAGACAAAAAAAAAAAAAAAAAACAC  343

seq1  AACTTTATCACTCGTCCCAGAATGGTCTGCAATCTAAAACTCCCGGTGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTATCACTCGTCCCAGAATGGTCTGCAATCTAAAACTCCCGGTGTT  393

seq1  TATTTCTGCGGTTTCCCGATTAATGATTTCTGATGGCATCTGAGCATAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGCGGTTTCCCGATTAATGATTTCTGATGGCATCTGAGCATAAA  443

seq1  TGGCTAAGGCTGCAGGAACCAAAACTGTGGAGAAGGGAGTGTGACCACCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAAGGCTGCAGGAACCAAAACTGTGGAGAAGGGAGTGTGACCACCA  493

seq1  CACACCCACTTTACTGAGGGGGCAGAAAGGGCAAGGTTGTCCGCACAGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCACTTTACTGAGGGGGCAGAAAGGGCAAGGTTGTCCGCACAGTG  543

seq1  TCCCTCAGCCAGCAGATGGCAGAGCAGTCATTCTGTCTGCCTCAGTACAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAGCCAGCAGATGGCAGAGCAGTCATTCTGTCTGCCTCAGTACAG  593

seq1  AGGATACTTAGAAACACTTACCCTCTTACAGAGTCTTTGACACCCTGGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACTTAGAAACACTTACCCTCTTACAGAGTCTTTGACACCCTGGTA  643

seq1  AGGACAAAGGTGACATGTGATTGTCTGTGGTCTGAGAAGAGACTCCATCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAAGGTGACATGTGATTGTCTGTGGTCTGAGAAGAGACTCCATCC  693

seq1  TGTCAAGCACCTAAAGGCTTCGCTCCAAGTCAGGGAGGAATGGATTGCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGCACCTAAAGGCTTCGCTCCAAGTCAGGGAGGAATGGATTGCTG  743

seq1  AGCAGGTTCCTATCTCGCTTGGAGACAACTTCTAAAAAAAAACAAAAACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTTCCTATCTCGCTTGGAGACAACTTCTAAAAAAAAACAAAAACA  793

seq1  AAAACACAGATCCGAAATCCAAAACATTCGTTCTAGTTTAATGCGCCTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACAGATCCGAAATCCAAAACATTCGTTCTAGTTTAATGCGCCTGT  843

seq1  CTGTTGCGATGTTCATTGAGACCAGTCAGAACATGCGACTTTGATTAATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCGATGTTCATTGAGACCAGTCAGAACATGCGACTTTGATTAATT  893

seq1  CCATCAGACACCAGAACTTCCGGTGCTGCAGAGCAGAGGACCAGCCACGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGACACCAGAACTTCCGGTGCTGCAGAGCAGAGGACCAGCCACGT  943

seq1  CCCGGTGACCATCGCCTTGCAGGAGTTAACCAACTTCCTCTCTTACCTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGTGACCATCGCCTTGCAGGAGTTAACCAACTTCCTCTCTTACCTTG  993

seq1  GACCACTTATATTCACAAACCTGGACCCTTTTGAAGACCACTAGCAATGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTTATATTCACAAACCTGGACCCTTTTGAAGACCACTAGCAATGG  1043

seq1  AATTC  1053
      |||||
seq2  AATTC  1048