BAC Information

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BAC

Clone NameB6Ng01-115H23
Chromosome5 (Build37)15 (Build37)
Map Location 140,242,835 - 140,242,94943,243,283 - 43,244,460
singlet/doubletsingletsinglet
Overlap geneInts1
Upstream geneBC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2
Downstream geneMafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270, Mad1l1, Ftsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3, Iqce, AA881470, 6530401C20Rik, Gna12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115H23.bB6Ng01-115H23.g
ACCDH920747DH920748
length9251,165
definitionDH920747|Mus musculus domesticus DNA, BAC clone: B6Ng01-115H23, 5' end.DH920748|Mus musculus domesticus DNA, BAC clone: B6Ng01-115H23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(140,242,835 - 140,242,949)(43,243,283 - 43,244,460)
sequence
gaattcttaggcacagcaataagccaactgaagaatatcgaggaaacatg
actaggaaaggaagaagacaaagtagtcttacttacagatggtgtgattt
atatatgaagaccctaaagattccaccaggaaaagttctatagcttatca
ataccttcagcaaggtagcgtcataatacttaataggtaaactacaaagc
ttaaaaccaaaaaaaaaaaaaaaatggaaaaagaaacaagaagatggaaa
attgttccatgctcatggattggtaagattagtatggtgaaaatggccat
atcatcaaaaaaaagaaaatctgcactttcaatgaaatccccatcaaatt
gctgaaacaattgtaagctgaaattggaaaaaaacaatattcaacttcat
gtggagatgcacatacatacatatacaacaaacagaatagctaagcaatc
ttgaataataaaagaactcctgaaggaatcactatccatattccaagttg
tattatagagatatagtaataaaattagcattatattgccataaaagcaa
ctacactgatcaatggaattaaagacccagacacagttacacacacacac
acacacacacacacacacacacacacattataattgaaaaagaatccaaa
atattaaaaatataatactttcaacaaatagttctagtcaaactggatag
ctgtgagtaaaaaggaaaatagatccatatatattctctgtgaaaaactc
aaatctaaatggattaagggcttcaacctaaggccagaaaccttggatct
gatcaaaaagaaagtatggaataaaattgggacttactgtcacaagcatc
atcctgagtgaggtaacacaatcacaaaagaacttcaaatgatatgtact
cactgataagtggaatattagccca
gaattcctaattgacatcttcagcattctttaatgtttttgctttttaaa
actgcctctgattattactttctattgagaattacatttttgtctctata
aacttaaagtacttttaaatatgtagaggaaatctattattatttttatt
atcttttttattatcttttaaactaacattcagttattgttgattttcct
ttttggagtcaactagagaagtagctaaccacttgtaaatagtgcctcta
tctttgacaacagtttaattttctatttcattttcttgcttaaatacatt
tttccaaaagaggaaaaccatcagagtgtaaggaagtagatgggaaaatt
ttctatggacaatatcatattaaaacctttaacatatcataaaactctga
gtgtgtttttgtcttgggaaatcacttttgcgtgtattcttcacaatatg
aattgtttgggggttgtatatccaatctggaaggcacacactcacatcat
gttttcaaacacaaattgtttagcttaatcttgctagcaacataagccac
gtggaaaggacaaatttttctgcatgtgcacattcttttaactgctttaa
tagcaaatgatagcactggatatgcttttattaatttatgcattttcata
cgtagaaagtcggttcttttaaccagtgtaaaattaaaacaacaaaaaca
aaagccatatactatcttaaatcaatgactgattttttaaaaaatatgtg
ttaaattatgtttatggaagagaaactttattggatagactgatgtgtac
ttagttctattagtattatttccatcttctggaaactaatgtgtcaatga
cacaatatatatattaaataccatttcagtgattactcttgggaccttga
agttaaattcattgataaatttccaaatattctgaatgtcttcacgatca
acttgctaaactgaatactgagcttcctggcataaatatgcacaaattag
tctgcttgggaaagaagctgtgagacagtcatagagttgatagaagaata
catgaaattcttggttcttagaagaccaacacttactactgggactgaga
agagtactcagttactttgttaccttgaattgtgaagacttatttaaatt
cataaaagtattctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_140242835_140242949
seq2: B6Ng01-115H23.b_242_665

seq1  --------------------------------------------------  0
                                                        
seq2  AGCTTAAAACCAAAAAAAAAAAAAAAATGGAAAAAGAAACAAGAAGATGG  50

seq1  --------------------------------------------------  0
                                                        
seq2  AAAATTGTTCCATGCTCATGGATTGGTAAGATTAGTATGGTGAAAATGGC  100

seq1  --------------------------------------------------  0
                                                        
seq2  CATATCATCAAAAAAAAGAAAATCTGCACTTTCAATGAAATCCCCATCAA  150

seq1  --------------------------------------------------  0
                                                        
seq2  ATTGCTGAAACAATTGTAAGCTGAAATTGGAAAAAAACAATATTCAACTT  200

seq1  --------------------------------------------------  0
                                                        
seq2  CATGTGGAGATGCACATACATACATATACAACAAACAGAATAGCTAAGCA  250

seq1  --------------------------------------------------  0
                                                        
seq2  ATCTTGAATAATAAAAGAACTCCTGAAGGAATCACTATCCATATTCCAAG  300

seq1  -----------AGCTTAAAACCAAAAAAGCTAG--ATAAATGGTTCAGCA  37
                 || |  | |  || |||  |||   || || |  ||  |
seq2  TTGTATTATAGAGAT--ATAGTAATAAAATTAGCATTATATTG-CCATAA  347

seq1  GA-TAAAGAGACCCACCACCGGGTCTAAAAACTTACATTCAAATTTACAC  86
       |  ||  | ||  | ||  ||   |||| ||   ||  || | ||||||
seq2  AAGCAACTACACTGATCAATGGAATTAAAGAC--CCAGACACAGTTACAC  395

seq1  ACACACACACACACACACACACACACACA  115
      |||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACA  424

seq1: chr15_43243283_43244460
seq2: B6Ng01-115H23.g_68_1232

seq1  GAATTCCTAATTGACATCTTCAGCATTCTTTAATGTTTTTGCTTTTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATTGACATCTTCAGCATTCTTTAATGTTTTTGCTTTTTAAA  50

seq1  ACTGCCTCTGATTATTACTTTCTATTGAGAATTACATTTTTGTCTCTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTCTGATTATTACTTTCTATTGAGAATTACATTTTTGTCTCTATA  100

seq1  AACTTAAAGTACTTTTAAATATGTAGAGGAAATCTATTATTATTTTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAAGTACTTTTAAATATGTAGAGGAAATCTATTATTATTTTTATT  150

seq1  ATCTTTTTTATTATCTTTTAAACTAACATTCAGTTATTGTTGATTTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTTATTATCTTTTAAACTAACATTCAGTTATTGTTGATTTTCCT  200

seq1  TTTTGGAGTCAACTAGAGAAGTAGCTAACCACTTGTAAATAGTGCCTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGTCAACTAGAGAAGTAGCTAACCACTTGTAAATAGTGCCTCTA  250

seq1  TCTTTGACAACAGTTTAATTTTCTATTTCATTTTCTTGCTTAAATACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGACAACAGTTTAATTTTCTATTTCATTTTCTTGCTTAAATACATT  300

seq1  TTTCCAAAAGAGGAAAACCATCAGAGTGTAAGGAAGTAGATGGGAAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAAAGAGGAAAACCATCAGAGTGTAAGGAAGTAGATGGGAAAATT  350

seq1  TTCTATGGACAATATCATATTAAAACCTTTAACATATCATAAAACTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGGACAATATCATATTAAAACCTTTAACATATCATAAAACTCTGA  400

seq1  GTGTGTTTTTGTCTTGGGAAATCACTTTTGCGTGTATTCTTCACAATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTTTGTCTTGGGAAATCACTTTTGCGTGTATTCTTCACAATATG  450

seq1  AATTGTTTGGGGGTTGTATATCCAATCTGGAAGGCACACACTCACATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTGGGGGTTGTATATCCAATCTGGAAGGCACACACTCACATCAT  500

seq1  GTTTTCAAACACAAATTGTTTAGCTTAATCTTGCTAGCAACATAAGCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAAACACAAATTGTTTAGCTTAATCTTGCTAGCAACATAAGCCAC  550

seq1  GTGGAAAGGACAAATTTTTCTGCATGTGCACATTCTTTTAACTGCTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAGGACAAATTTTTCTGCATGTGCACATTCTTTTAACTGCTTTAA  600

seq1  TAGCAAATGATAGCACTGGATATGCTTTTATTAATTTATGCATTTTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAATGATAGCACTGGATATGCTTTTATTAATTTATGCATTTTCATA  650

seq1  CGTAGAAAGTCGGTTCTTTTAACCAGTGTAAAATTAAAACAACAAAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGAAAGTCGGTTCTTTTAACCAGTGTAAAATTAAAACAACAAAAACA  700

seq1  AAAGCCATATACTATCTTAAATCAATGACTGATTTTTTAAAAAATATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATATACTATCTTAAATCAATGACTGATTTTTTAAAAAATATGTG  750

seq1  TTAAATTATGTTTATGGAAGAGAAACTTTATTGGATAGACTGATGTGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATGTTTATGGAAGAGAAACTTTATTGGATAGACTGATGTGTAC  800

seq1  TTAGTTCTATTAGTATTATTTCCATCTTCTGGAAACTAATGTGTCAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCTATTAGTATTATTTCCATCTTCTGGAAACTAATGTGTCAATGA  850

seq1  CACAATATATATATTAAATACCA-TTCAGTGATTACTCTTGGGACCTTGA  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CACAATATATATATTAAATACCATTTCAGTGATTACTCTTGGGACCTTGA  900

seq1  AGTTAAATTCATTGATAAATTTCCAAATATTCTGAATGTCTTCACGATCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAATTCATTGATAAATTTCCAAATATTCTGAATGTCTTCACGATCA  950

seq1  ACTTGCTAAACTGAATACTGAGCTTCCTGGCATAAATATGCACCAAATTA  999
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACTTGCTAAACTGAATACTGAGCTTCCTGGCATAAATATGCA-CAAATTA  999

seq1  GTCTGCTTGGGAGAGAAGCTGTGAGACAGTCATAGGAGTTGATAGAAGGA  1049
      |||||||||||| ||||||||||||||||||||| |||||||||||| ||
seq2  GTCTGCTTGGGAAAGAAGCTGTGAGACAGTCATA-GAGTTGATAGAA-GA  1047

seq1  ATACATGGAAATC-TGGTACTTAGAAGACCAACAACCTAACCTAACTGGG  1098
      ||||||| || || |||| |||||||||||||||  || ||   ||||||
seq2  ATACATGAAATTCTTGGTTCTTAGAAGACCAACA--CTTAC--TACTGGG  1093

seq1  ACTGGAAGGAGAGTACCTCAGGGTACCTTTTGTTACTTTGTAATGAAAGC  1148
      ||||  || |||||| |||| | |||  |||||||| ||| | ||  |  
seq2  ACTG--AGAAGAGTA-CTCA-GTTAC--TTTGTTACCTTGAATTGTGAAG  1137

seq1  ACTTATTTAATATCATATAAAAGTATTCTT  1178
      ||||||||||  ||  ||||||||||||||
seq2  ACTTATTTAAATTC--ATAAAAGTATTCTT  1165