BAC Information

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BAC

Clone NameB6Ng01-115I01
Chromosome5 (Build37)
Map Location 130,057,381 - 130,201,393
singlet/doubletdoublet
Overlap geneSfrs8, Mmp17, EG620248, Zfp11, 1700016K13Rik
Upstream geneFzd10, LOC100040398, Piwil1, Rimbp2, Stx2, Ran, LOC100040441, Gpr133, LOC100039355
Downstream geneMrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik, Caln1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115I01.bB6Ng01-115I01.g
ACCDH920751DH920752
length1,1741,125
definitionDH920751|Mus musculus domesticus DNA, BAC clone: B6Ng01-115I01, 5' end.DH920752|Mus musculus domesticus DNA, BAC clone: B6Ng01-115I01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,057,381 - 130,058,552)(130,200,256 - 130,201,393)
sequence
gaattctggtcatgcctgtcttgtctccaggtgtctttaaatatccttta
tgcttggtgtcttagttagggttttcttgctgtgaaaagtcaccatgacc
acaactcctataaagaacagattagggctggcttacagttcagagattta
gtctaatatcatcatgataggaagcattgtggcacataggcaaacatggt
gctgaagaggagctgagagttctgatacttcttccaaggcatacctacca
atagtgccactccctctgagcctatgagggcaattttcattaggagtacc
tcacttggctttcgttcatagtggagaataagccctttgctcttgtttgc
tattgttagaaagacaaagggggctagaactcataagtgtcggggtggca
ggcatgtgccaccacagcctttttaactttaattacattgatacttgtaa
ggacctttggagtctggagtgtccctgtggttaaagtttcccatctcctg
gatgtccagacctgctgtttctatgtccaccaggatctttttagtggttc
tgttctcggggtaacctctgcactgcccttcccagaatgagcttttcaaa
gaggtggcagaaccccactagggcactatgaccccagttcccagagcccc
acagagataggctgttttctggtccctcagacaaagcctgttcctgcaga
aatggaggagcaaagtacacacagctgggggcagccattatgcactgtgg
ccctggatgagggcatgcgtgaggctctatggtgtggggcatgtaggaac
aggagctctgcagctttggagagacatgggcagcaagaacaggaagctta
caagggcctggcttggtagggatgtgtggagcctgattgaatctcttgat
tcactatcctttgtacagtgaaacagaggttaagacccatctattagcct
ggaatgtagcttcagttggcagtgtgcttgcctggcatgcacagggtcct
tcctagcttgtccttgccacatgttagcatactaatattccagcagtgca
gagaatgaagcaggagttcagagatcagctcatccttgctttatggccag
ttcaggtcagccttgcactacatgagaaacttgcctcaaggtggaataga
aaagggacagtgtgaggaggctca
gaattcatctttagctatcatgccaggtaaaactaatgactgcttggagc
attaggatgcactcctgtaatctcagcagttacagggatgaggcaggggg
atagctgtgagtttgaggccagcctggactacagtagtctttaggcagcc
tgaattgcagagtgagaatttgtctcaaaaacaaaaacaaaaacaaaaaa
caaaaaaaacaaaccaaaaaccaacagcagcaataaaaaacaaaacaaga
caatgttacctatttggagagaaagagatacaggaaaaaacactaaaaat
taatttttttcatgcgactggattctaatcagatgacagccatttgtata
tatttttaaaattgaatttactgtatgatactataaaataatcctatgac
ccctttgactggtaccattgaccaaatgaaacatgaagtttttctgcttc
tggcttcaaattctctcagaggagattcagagtacagaacacacaggaag
cctgctaaagaaaaaaagaccccagacaagacctggagggatgctaagag
acatgtggacttgccttgttcacaggggaacttatttgtagctcaagtca
tcctagaattcatgatcctcctgccacagcctccaaggtattgcaggtgc
taccatacaaaattggatttcctttgacagacttcttatctccagggttt
tagaaaattcttaacatttttatgagttcctggtataaaggacaagataa
gatcctcgctctaggtgccagaaccagtggctcagttcttgaggcagagg
gcatcctgtcatttgaggcatggagaggctctaggctcacgcccctggca
tgtatctacagccacatgatatatgtgactttcctcttacccagaatgta
ctgcaggagtagccgggtccttaaacagcatacatgatcctgtacttctg
ctccaacatatcagcctgtctcagttcgcacagagggcccatgctgaatg
gagattactgaagctagttcatcttatcataaggaagtggctgaaactag
atgatgggtggttttatctcagttttctcaatctctgataaagttttccc
atctgttctataagaacactagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_130057381_130058552
seq2: B6Ng01-115I01.b_44_1217

seq1  GAATTCTGGTCATGCCTGTCTTGTCTCCAGGTGTCTTTAAATATCCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTCATGCCTGTCTTGTCTCCAGGTGTCTTTAAATATCCTTTA  50

seq1  TGCTTGGTGTCTTAGTTAGGGTTTTCTTGCTGTGAAAAGTCACCATGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGTGTCTTAGTTAGGGTTTTCTTGCTGTGAAAAGTCACCATGACC  100

seq1  ACAACTCCTATAAAGAACAGATTAGGGCTGGCTTACAGTTCAGAGATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCCTATAAAGAACAGATTAGGGCTGGCTTACAGTTCAGAGATTTA  150

seq1  GTCTAATATCATCATGATAGGAAGCATTGTGGCACATAGGCAAACATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATATCATCATGATAGGAAGCATTGTGGCACATAGGCAAACATGGT  200

seq1  GCTGAAGAGGAGCTGAGAGTTCTGATACTTCTTCCAAGGCATACCTACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGAGGAGCTGAGAGTTCTGATACTTCTTCCAAGGCATACCTACCA  250

seq1  ATAGTGCCACTCCCTCTGAGCCTATGAGGGCAATTTTCATTAGGAGTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGCCACTCCCTCTGAGCCTATGAGGGCAATTTTCATTAGGAGTACC  300

seq1  TCACTTGGCTTTCGTTCATAGTGGAGAATAAGCCCTTTGCTCTTGTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGGCTTTCGTTCATAGTGGAGAATAAGCCCTTTGCTCTTGTTTGC  350

seq1  TATTGTTAGAAAGACAAAGGGGGCTAGAACTCATAAGTGTCGGGGTGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTAGAAAGACAAAGGGGGCTAGAACTCATAAGTGTCGGGGTGGCA  400

seq1  GGCATGTGCCACCACAGCCTTTTTAACTTTAATTACATTGATACTTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTGCCACCACAGCCTTTTTAACTTTAATTACATTGATACTTGTAA  450

seq1  GGACCTTTGGAGTCTGGAGTGTCCCTGTGGTTAAAGTTTCCCATCTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTTGGAGTCTGGAGTGTCCCTGTGGTTAAAGTTTCCCATCTCCTG  500

seq1  GATGTCCAGACCTGCTGTTTCTATGTCCACCAGGATCTTTTTAGTGGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCAGACCTGCTGTTTCTATGTCCACCAGGATCTTTTTAGTGGTTC  550

seq1  TGTTCTCGGGGTAACCTCTGCACTGCCCTTCCCAGAATGAGCTTTTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCGGGGTAACCTCTGCACTGCCCTTCCCAGAATGAGCTTTTCAAA  600

seq1  GAGGTGGCAGAACCCCACTAGGGCACTATGACCCCAGTTCCCAGAGCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGCAGAACCCCACTAGGGCACTATGACCCCAGTTCCCAGAGCCCC  650

seq1  ACAGAGATAGGCTGTTTTCTGGTCCCTCAGACAAAGCCTGTTCCTGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATAGGCTGTTTTCTGGTCCCTCAGACAAAGCCTGTTCCTGCAGA  700

seq1  AATGGAGGAGCAAAGTACACACAGCTGGGGGCAGCCATTATGCACTGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGGAGCAAAGTACACACAGCTGGGGGCAGCCATTATGCACTGTGG  750

seq1  CCCTGGATGAGGGCATGCGTGAGGCTCTATGGTGTGGGGCATGTAGGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGATGAGGGCATGCGTGAGGCTCTATGGTGTGGGGCATGTAGGAAC  800

seq1  AGGAGCTCTGCAGCTTTGGAGAGACATGGGCAGCAAGAACAGGAAGCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTCTGCAGCTTTGGAGAGACATGGGCAGCAAGAACAGGAAGCTTA  850

seq1  CAAGGGCCTGGCTTGGTAGGGATGTGTGGAGCCTGATTGAATCTCTTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCCTGGCTTGGTAGGGATGTGTGGAGCCTGATTGAATCTCTTGAT  900

seq1  TCACTATCCTTTGTACAGTG-AACAGAGGTTAAGACCCATCTATTAGCCT  949
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCACTATCCTTTGTACAGTGAAACAGAGGTTAAGACCCATCTATTAGCCT  950

seq1  GGAATGTAGC-TCAGTTGGCAGTGTGCTTGCCTGGCATGCACAGGGTCCT  998
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTAGCTTCAGTTGGCAGTGTGCTTGCCTGGCATGCACAGGGTCCT  1000

seq1  TCCTAGGCTTGTCCTTGCCACATGTTAGCATACTATAATCCCAGCAGTGC  1048
      ||||| |||||||||||||||||||||||||||||  || ||||||||||
seq2  TCCTA-GCTTGTCCTTGCCACATGTTAGCATACTAATATTCCAGCAGTGC  1049

seq1  AGAGATAGAAGCAGGAGGTTCAGAAGATCAGCTCATCCTTGC-TTATGGC  1097
      |||||  ||||||||| |||||| |||||||||||||||||| |||||||
seq2  AGAGAATGAAGCAGGA-GTTCAG-AGATCAGCTCATCCTTGCTTTATGGC  1097

seq1  AAGTTCAGAGTCAGCC-TGCACTACATGAG-AACTTGGCTCAAAGTTGGA  1145
       ||||||| ||||||| ||||||||||||| |||||| ||| ||| ||||
seq2  CAGTTCAG-GTCAGCCTTGCACTACATGAGAAACTTGCCTC-AAGGTGGA  1145

seq1  GTAGACA--GGACAGTGTGAGGAGGCTCA  1172
       |||| |  ||||||||||||||||||||
seq2  ATAGAAAAGGGACAGTGTGAGGAGGCTCA  1174

seq1: chr5_130200256_130201393
seq2: B6Ng01-115I01.g_66_1190 (reverse)

seq1  AAGCTTAGTGGTCTTATAGAAACAGAT--GAAAACTTTAAATTCAAGAGA  48
      |||| ||||| |||||||| |||||||  ||||||||||   || |||||
seq2  AAGC-TAGTGTTCTTATAG-AACAGATGGGAAAACTTTA---TC-AGAGA  44

seq1  TTGAGAAAACTTGAGATAAAA-CACCCATCATCTAGTGTCCAACCACTGT  97
      |||||||||| |||||||||| ||||||||||||||| | || ||||| |
seq2  TTGAGAAAAC-TGAGATAAAACCACCCATCATCTAGT-TTCAGCCACT-T  91

seq1  CCTTATGAATAAGATGAACCTAGCCTTCAGTTAATTCTTCCATACAGCAT  147
      ||||||| |||||||||| |||| |||||| ||||   ||||| ||||||
seq2  CCTTATG-ATAAGATGAA-CTAG-CTTCAG-TAAT--CTCCATTCAGCAT  135

seq1  GGGCCCTCTGTGCGAACTGGAGAACAGGCTGAATATGTTGGAGCAGAAGT  197
      |||||||||||||||||| ||| |||||||| ||||||||||||||||||
seq2  GGGCCCTCTGTGCGAACT-GAG-ACAGGCTG-ATATGTTGGAGCAGAAGT  182

seq1  ACAGGATCATGTATGCTG-TTAAGGACCCGGCTACTCCTGCAGTACATTC  246
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACAGGATCATGTATGCTGTTTAAGGACCCGGCTACTCCTGCAGTACATTC  232

seq1  TGGGTAAGAGGAAAGTCACATATATCATGTGGCTGTAGATACATGCCAGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAGAGGAAAGTCACATATATCATGTGGCTGTAGATACATGCCAGG  282

seq1  GGCCTGAGCCTAGAGCCTCTCCATGCCTC-AATGACAGGATGCCCTCTGC  345
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGCGTGAGCCTAGAGCCTCTCCATGCCTCAAATGACAGGATGCCCTCTGC  332

seq1  CTCAAGAACTGAGCCACTGGTTCTGGCACCTAGAGCGAGGATCTTATCTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAACTGAGCCACTGGTTCTGGCACCTAGAGCGAGGATCTTATCTT  382

seq1  GTCCTTTATACCAGGAACTCATAAAAATGTTAAGAATTTTCTAAAACCCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTATACCAGGAACTCATAAAAATGTTAAGAATTTTCTAAAACCCT  432

seq1  GGAGATAAGAAGTCTGTCAAAGGAAATCCAATTTTGTATGGTAGCACCTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAAGAAGTCTGTCAAAGGAAATCCAATTTTGTATGGTAGCACCTG  482

seq1  CAATACCTTGGAGGCTGTGGCAGGAGGATCATGAATTCTAGGATGACTTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCTTGGAGGCTGTGGCAGGAGGATCATGAATTCTAGGATGACTTG  532

seq1  AGCTACAAATAAGTTCCCCTGTGAACAAGGCAAGTCCACATGTCTCTTAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAAATAAGTTCCCCTGTGAACAAGGCAAGTCCACATGTCTCTTAG  582

seq1  CATCCCTCCAGGTCTTGTCTGGGGTCTTTTTTTCTTTAGCAGGCTTCCTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCCAGGTCTTGTCTGGGGTCTTTTTTTCTTTAGCAGGCTTCCTG  632

seq1  TGTGTTCTGTACTCTGAATCTCCTCTGAGAGAATTTGAAGCCAGAAGCAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTGTACTCTGAATCTCCTCTGAGAGAATTTGAAGCCAGAAGCAG  682

seq1  AAAAACTTCATGTTTCATTTGGTCAATGGTACCAGTCAAAGGGGTCATAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTCATGTTTCATTTGGTCAATGGTACCAGTCAAAGGGGTCATAG  732

seq1  GATTATTTTATAGTATCATACAGTAAATTCAATTTTAAAAATATATACAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTTTATAGTATCATACAGTAAATTCAATTTTAAAAATATATACAA  782

seq1  ATGGCTGTCATCTGATTAGAATCCAGTCGCATGAAAAAAATTAATTTTTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGTCATCTGATTAGAATCCAGTCGCATGAAAAAAATTAATTTTTA  832

seq1  GTGTTTTTTCCTGTATCTCTTTCTCTCCAAATAGGTAACATTGTCTTGTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTTCCTGTATCTCTTTCTCTCCAAATAGGTAACATTGTCTTGTT  882

seq1  TTGTTTTTTATTGCTGCTGTTGGTTTTTGGTTTGTTTTTTTTGTTTTTTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTATTGCTGCTGTTGGTTTTTGGTTTGTTTTTTTTGTTTTTTG  932

seq1  TTTTTGTTTTTGTTTTTGAGACAAATTCTCACTCTGCAATTCAGGCTGCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTGTTTTTGAGACAAATTCTCACTCTGCAATTCAGGCTGCC  982

seq1  TAAAGACTACTGTAGTCCAGGCTGGCCTCAAACTCACAGCTATCCCCCTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACTACTGTAGTCCAGGCTGGCCTCAAACTCACAGCTATCCCCCTG  1032

seq1  CCTCATCCCTGTAACTGCTGAGATTACAGGAGTGCATCCTAATGCTCCAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCCCTGTAACTGCTGAGATTACAGGAGTGCATCCTAATGCTCCAA  1082

seq1  GCAGTCATTAGTTTTACCTGGCATGATAGCTAAAGATGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCATTAGTTTTACCTGGCATGATAGCTAAAGATGAATTC  1125