BAC Information

Click to search

BAC

Clone NameB6Ng01-115M09
Chromosome5 (Build37)
Map Location 60,451,337 - 60,522,006
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041425, LOC546866
Downstream geneCbfa2t2-ps1, LOC100041498, LOC666597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115M09.bB6Ng01-115M09.g
ACCDH920950DH920951
length1,120712
definitionDH920950|Mus musculus domesticus DNA, BAC clone: B6Ng01-115M09, 5' end.DH920951|Mus musculus domesticus DNA, BAC clone: B6Ng01-115M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,520,878 - 60,522,006)(60,451,337 - 60,452,048)
sequence
gaattcacattggcctcttcaaaaatgtatttgaaaaatgtattgggaat
gaaacatcatcccaaatacatagtataagaaaaattaaatatgtaggatg
taaaggtcaaataggaagattttaaggaagatccttatgtagcagatgta
gtcataaacttatgtggaagaaatcttctataacaatggagagctctgaa
taatattccttaaatctgaggaaatggatatctcttttaactgatgctgt
atatttacatcttatgcaatatagcttgattgtttctgtgtttaaatgtg
tgacaagccagatgtgttagcatggagctacgcatggagtgtgaatgcct
agtgtatgtgtggaatataaagatctaattgtaccttgacaaacagaagg
agggagtaagataagctgaacaacactggactatagaaataaatttgctg
aattagatcaattgctatcttttaaagatgtttgaacattagaacggaaa
gcatgactccttatattgttttctctgaatgcaaattacatgtgtttcag
gatttagtgtgcataatgacaactcttagaaaacatgtaaatgtaaggag
aattttgttcaatgttgtgacaaagaaagatcctagataaacagtgactc
catcattatatatgtcatagaaaacttaaccatgatctattctccggtat
atcaaatgataatgaacagaataaaaatcttgctacttgtacaaaaaccc
taggaagcagtaggattcctgtaagacaaaacactgcatagctacaataa
aatgacataggcaataaaaattctcagcaatgtaaatgttgaaacaaata
gaggattaattgatgcactgtgaaaaggcctagtgaggtagacaggcgtg
tgtcaggatacaaagatgtttgttggaaaaacagaagtgctatggcagtc
ttcacaacatgaaagatacaagacccacagccaagcagtcagacaggaaa
tgaggaaatgctttgcattagcattcactctgagtacttgaaaatgacgt
atagttttacatttttagattcaatatgtaataacacagtgtatgggaga
agtggataaggagatcagaa
gaattcagtttcctccttaatatttagaaacaaagataatatacactgat
cataatgatggtgtaaaaatggcacaagaactcaaaaaatagaaatacag
agagggcttgtatcacagtattgtgcaaaactgacttttgctggctttga
agatttggtggttatgagccacaaagttcaaaaaggttcagacagacaga
aacaaaactagccgaaaacctaggttgttctctttaaagagagagagagc
ataatatcttcattttaactcagtaaaacgattctcagtatataaaattt
ataacatgaaataatacactcacaattttatttcactaagtatgtattat
ctaatgtagtatcaaaatgaaagtaatacagatatagataaaatgtgctg
ttaaattacaaaaacataatggaaaatgctaatattttataatcatcttt
cctcattaaggaaaaaagcacttagatcgactagtggcagcacacgcctt
taatcccaacacttgggaggcagagggaggccgatttctgagctggagat
cagtctcgtctacagagtgagttccaggatagccaggactatacagagaa
accctgtctcaaaaaacaaacaaataaacaactaaaaaaaggaagaagaa
aaaggagaaggaggaagaggaggaggagaaggaggagaagaatgaggagg
aagaggaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_60520878_60522006
seq2: B6Ng01-115M09.b_51_1168 (reverse)

seq1  TTCTGATCTCCTTATCCACTTCTCCCATAACAACTGGTGTTATTACATAT  50
      |||||||||||||||||||||||||||||   ||| ||||||||||||||
seq2  TTCTGATCTCCTTATCCACTTCTCCCATA--CACT-GTGTTATTACATAT  47

seq1  TGAAATCTAAAAATGTAAAAACTATACGGTCATTTTTCAAGTACTCAGAG  100
      || ||||||||||||| |||||||||| |||| |||||||||||||||||
seq2  TG-AATCTAAAAATGT-AAAACTATAC-GTCA-TTTTCAAGTACTCAGAG  93

seq1  TGAATGCTAATGCAAAGCATTTTCCTCATTTCCTGTCCTGACTGCTTGGC  150
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  TGAATGCTAATGCAAAGCA-TTTCCTCATTTCCTGT-CTGACTGCTTGGC  141

seq1  TGTGGGTCTTGTATCTTTCATGTTTGTGAAGACTGCCATAGCACTTCTGT  200
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTGGGTCTTGTATCTTTCATG-TTGTGAAGACTGCCATAGCACTTCTGT  190

seq1  TTTTCCAACAAACATCTTTGTATCCTGACACACGCCTGTCTACCTCACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAACAAACATCTTTGTATCCTGACACACGCCTGTCTACCTCACTA  240

seq1  GGCCTTTTCACAGTGCATCAATTAATCCTCTATTTGTTTCAACATTTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTTCACAGTGCATCAATTAATCCTCTATTTGTTTCAACATTTACA  290

seq1  TTGCCTGAGAATTTTTATTGCCTATGTCATTTTATTGTAGCTATGCAGTG  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTG-CTGAGAATTTTTATTGCCTATGTCATTTTATTGTAGCTATGCAGTG  339

seq1  TTTTGTCTTACAGGAATCCTACTGCTTCCTAGGGTTTTTGTACAAGTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTACAGGAATCCTACTGCTTCCTAGGGTTTTTGTACAAGTAGC  389

seq1  AAGATTTTTATTCTGTTCATTATCATTTGATATACCGGAGAATAGATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTTATTCTGTTCATTATCATTTGATATACCGGAGAATAGATCAT  439

seq1  GGTTAAGTTTTCTATGACATATATAATGATGGAGTCACTGTTTATCTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGTTTTCTATGACATATATAATGATGGAGTCACTGTTTATCTAGG  489

seq1  ATCTTTCTTTGTCACAACATTGAACAAAATTCTCCTTACATTTACATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTTTGTCACAACATTGAACAAAATTCTCCTTACATTTACATGTT  539

seq1  TTCTAAGAGTTGTCATTATGCACACTAAATCCTGAAACACATGTAATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGAGTTGTCATTATGCACACTAAATCCTGAAACACATGTAATTTG  589

seq1  CATTCAGAGAAAACAATATAAGGAGTCATGCTTTCCGTTCTAATGTTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGAGAAAACAATATAAGGAGTCATGCTTTCCGTTCTAATGTTCAA  639

seq1  ACATCTTTAAAAGATAGCAATTGATCTAATTCAGCAAATTTATTTCTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTAAAAGATAGCAATTGATCTAATTCAGCAAATTTATTTCTATA  689

seq1  GTCCAGTGTTGTTCAGCTTATCTTACTCCCTCCTTCTGTTTGTCAAGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTGTTGTTCAGCTTATCTTACTCCCTCCTTCTGTTTGTCAAGGTA  739

seq1  CAATTAGATCTTTATATTCCACACATACACTAGGCATTCACACTCCATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGATCTTTATATTCCACACATACACTAGGCATTCACACTCCATGC  789

seq1  GTAGCTCCATGCTAACACATCTGGCTTGTCACACATTTAAACACAGAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCCATGCTAACACATCTGGCTTGTCACACATTTAAACACAGAAAC  839

seq1  AATCAAGCTATATTGCATAAGATGTAAATATACAGCATCAGTTAAAAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGCTATATTGCATAAGATGTAAATATACAGCATCAGTTAAAAGAG  889

seq1  ATATCCATTTCCTCAGATTTAAGGAATATTATTCAGAGCTCTCCATTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCATTTCCTCAGATTTAAGGAATATTATTCAGAGCTCTCCATTGTT  939

seq1  ATAGAAGATTTCTTCCACATAAGTTTATGACTACATCTGCTACATAAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGATTTCTTCCACATAAGTTTATGACTACATCTGCTACATAAGGA  989

seq1  TCTTCCTTAAAATCTTCCTATTTGACCTTTACATCCTACATATTTAATTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTAAAATCTTCCTATTTGACCTTTACATCCTACATATTTAATTT  1039

seq1  TTCTTATACTATGTATTTGGGATGATGTTTCATTCCCAATACATTTTTCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATACTATGTATTTGGGATGATGTTTCATTCCCAATACATTTTTCA  1089

seq1  AATACATTTTTGAAGAGGCCAATGTGAAT  1129
      |||||||||||||||||||||||||||||
seq2  AATACATTTTTGAAGAGGCCAATGTGAAT  1118

seq1: chr5_60451337_60452048
seq2: B6Ng01-115M09.g_67_778

seq1  GAATTCAGTTTCCTCCTTAATATTTAGAAACAAAGATAATATACACTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTCCTCCTTAATATTTAGAAACAAAGATAATATACACTGAT  50

seq1  CATAATGATGGTGTAAAAATGGCACAAGAACTCAAAAAATAGAAATACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGATGGTGTAAAAATGGCACAAGAACTCAAAAAATAGAAATACAG  100

seq1  AGAGGGCTTGTATCACAGTATTGTGCAAAACTGACTTTTGCTGGCTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCTTGTATCACAGTATTGTGCAAAACTGACTTTTGCTGGCTTTGA  150

seq1  AGATTTGGTGGTTATGAGCCACAAAGTTCAAAAAGGTTCAGACAGACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGGTGGTTATGAGCCACAAAGTTCAAAAAGGTTCAGACAGACAGA  200

seq1  AACAAAACTAGCCGAAAACCTAGGTTGTTCTCTTTAAAGAGAGAGAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACTAGCCGAAAACCTAGGTTGTTCTCTTTAAAGAGAGAGAGAGC  250

seq1  ATAATATCTTCATTTTAACTCAGTAAAACGATTCTCAGTATATAAAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATCTTCATTTTAACTCAGTAAAACGATTCTCAGTATATAAAATTT  300

seq1  ATAACATGAAATAATACACTCACAATTTTATTTCACTAAGTATGTATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATGAAATAATACACTCACAATTTTATTTCACTAAGTATGTATTAT  350

seq1  CTAATGTAGTATCAAAATGAAAGTAATACAGATATAGATAAAATGTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTAGTATCAAAATGAAAGTAATACAGATATAGATAAAATGTGCTG  400

seq1  TTAAATTACAAAAACATAATGGAAAATGCTAATATTTTATAATCATCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTACAAAAACATAATGGAAAATGCTAATATTTTATAATCATCTTT  450

seq1  CCTCATTAAGGAAAAAAGCACTTAGATCGACTAGTGGCAGCACACGCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTAAGGAAAAAAGCACTTAGATCGACTAGTGGCAGCACACGCCTT  500

seq1  TAATCCCAACACTTGGGAGGCAGAGGGAGGCCGATTTCTGAGCTGGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAACACTTGGGAGGCAGAGGGAGGCCGATTTCTGAGCTGGAGAT  550

seq1  CAGTCTCGTCTACAGAGTGAGTTCCAGGATAGCCAGGACTATACAGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCGTCTACAGAGTGAGTTCCAGGATAGCCAGGACTATACAGAGAA  600

seq1  ACCCTGTCTCAAAAAACAAACAAATAAACAACTAAAAAAAGGAAGAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTCAAAAAACAAACAAATAAACAACTAAAAAAAGGAAGAAGAA  650

seq1  AAAGGAGAAGGAGGAAGAGGAGGAGGAGAAGGAGGAGAAGAATGAGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGAAGGAGGAAGAGGAGGAGGAGAAGGAGGAGAAGAATGAGGAGG  700

seq1  AAGAGGAGGAGG  712
      ||||||||||||
seq2  AAGAGGAGGAGG  712