BAC Information

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BAC

Clone NameB6Ng01-116L04
Chromosome5 (Build37)
Map Location 58,172,476 - 58,292,286
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116L04.bB6Ng01-116L04.g
ACCDH921631DH921632
length1,1571,101
definitionDH921631|Mus musculus domesticus DNA, BAC clone: B6Ng01-116L04, 5' end.DH921632|Mus musculus domesticus DNA, BAC clone: B6Ng01-116L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,291,107 - 58,292,286)(58,172,476 - 58,173,582)
sequence
gaattcttaaccttctggacagatggacattttaaagcatgtgacaggaa
cagaccaacgaagcaactgcagaaaaatcatgctctattagtactattgt
ttggctttctaatctgctttacctccacatctgtcagagatttgattgct
gcatttataatattcttattctctgtttcaaagaaagagagtatctgaga
ttattgtattttaaacttatcatcattttctgtacatttataaacactgc
cattttccacacattatattaatgaaattttcactttagaaatacaaaac
tttcaatctgtgggacatctataaattgtcatcttttctatacagtaaaa
tctttgactgactagggttatatcccactggattctgtcataagcttttt
ctatattaataaactacagtaataataaacatgtaattaattcttattct
gggggaagaacaaggtactcttcactttttttttgtactgattagcttca
gttttgaaaaaaaaaaacagcattatattgacagctaataaattaagaat
ggtggtttttaagtgtgctttacctaacagaattctaaactaaagtttaa
aaaattaaataaaataacagatctgtctcaaaaggacacaaatatattac
aagggaagtccagttataactagaagtcttttattgacccgaagagccca
aattatacaatctggatcttgtttctggagctgggtaacttaggtcttag
cctgctgtacggttccctgttctgatagagatgccatccaaggatgtcct
aatgtccttgtttttaactattgtggctttctgaatcagagccactgaat
cagaacaagttcaatatcattttcttcaaggattaattcgtccttcttct
gggcttgagaaaagagcagtaacctgtccttatctgaaccctgagggtgt
atttttttttcacccagaaattacggatttcaaccgaagactcactctgc
tgtatacgacttgatggggaggtgagcacatacagacagcttctgatggg
atcccagctagaccttgatagtgctctgaaatgactgcagatgttctggc
ggtggcagttctttctggtacccactctgtgattgaccctctgctttctt
tcaagga
gaattcttttattaggctccaagtcattcactctctgaagtaagagcaaa
ccatttaaggtgagaaaggggtattcattatgatggcatttcctttcctg
gctgatttggtgggtaatatctaaaagcttctgttctttagcaatgtgta
aataatattgacaaatgtgactgtgaatatatgtgtgcacacaactcaca
catcaaataatttaattatgatcaagaatgatatctacataagcttcaag
aaaacagcataccatgttcatttatagtggcttacgaaatgtataattgt
gcttatttttaaaaaaaaaacatgtcccaaagggaggcagttgctcctat
gtttgaaagtaaaaataaaatagtaatttttgtgcaaacagtgtagtgaa
aaatagatttgttaggaaccctactcttaacttgggtccctgagttaaga
atatcacttattcatatgcaatttcatataacaagattcctatctccagg
ttctactttcttccatgtgaagagagcaaagttcagattactacttcaca
aggtctttgtaaggttaaattaaaagccacatacgatattttaataaaca
ttcttgtgaagaaaaaaattcattcatatgttggcaagttcagagaggaa
gatataaaagtgtattagatatgaacattacatgacacgggatctttcat
aaggaaatacatcaaagaagcaggaagacatttttatggttacatttcat
gagaagtggagagtcagtgagaagtttgttgggacaggaagcgtgaaccg
atagttatgcaccagtagggagatagcatggctgctttgtgcagattcat
gtgtggccctgtgttttcagagataaggatattctttcctctcggtatac
acagttcagctacagaagtcttccaagtgataatagatagatgacctgct
tgaggaggcagcaggaagttgagggccatctgcttctccgtttgctcaac
tgtgaatgtgccttgtactggggccctgtatactagctgtgacagcttca
cattaacagtcatcgcagtttaagttttgttaattattcatatggatgac
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58291107_58292286
seq2: B6Ng01-116L04.b_46_1202 (reverse)

seq1  TCCTTGGAAAGAAAAAGCAGAGGGTCCAAATCAACAAAGAGTGGGGTAAC  50
      ||||| |||||  |||||||||||||  |||   || ||||| ||||| |
seq2  TCCTT-GAAAG--AAAGCAGAGGGTC--AAT---CACAGAGT-GGGTACC  41

seq1  AGAAAGGAACTGGCCACCGCCAGAACCATCTGCAGTCATGTTCAGAGCAC  100
      ||||| ||||| ||||||||||||| ||||||||||||| ||||||||||
seq2  AGAAA-GAACT-GCCACCGCCAGAA-CATCTGCAGTCAT-TTCAGAGCAC  87

seq1  TATCAAGGGTCTTAGGCTGGGATTCCCATCAAGAAGCTGTCTGTATGTGC  150
      |||||| |||||   ||||||| ||||||| |||||||||||||||||||
seq2  TATCAA-GGTCT--AGCTGGGA-TCCCATC-AGAAGCTGTCTGTATGTGC  132

seq1  TCACCTCCCCATCAAGTCGTTATACAGCAGAGTGAGTCTTCGGTTGAAAT  200
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCACCTCCCCATCAAGTCG-TATACAGCAGAGTGAGTCTTCGGTTGAAAT  181

seq1  CCGTAATTTCTTGGGTGAAAAAAAAATACACCCTCAGGGTTCAGATAAGG  250
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCGTAATTTC-TGGGTGAAAAAAAAATACACCCTCAGGGTTCAGATAAGG  230

seq1  ACAGGTTACTTGCTCTTTTTCTCAAGCCCAGAAGAAGGACGAATTAATCC  300
      ||||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  ACAGGTTAC-TGCTC-TTTTCTCAAGCCCAGAAGAAGGACGAATTAATCC  278

seq1  TTGAAGAAAATGATATTGAACTTGTTTCTGATTCAGTGGCTCTGATTCAG  350
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGAAGAAAATGATATTGAACTTG-TTCTGATTCAGTGGCTCTGATTCAG  327

seq1  AAAGCCACAATAGTTAAAAACAAGGACATTAGGACATCCTTGGATGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCACAATAGTTAAAAACAAGGACATTAGGACATCCTTGGATGGCAT  377

seq1  CTCTATCAGAACAGGGAACCGTACAGCAGGCTAAGACCTAAGTTACCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCAGAACAGGGAACCGTACAGCAGGCTAAGACCTAAGTTACCCAG  427

seq1  CTCCAGAAACAAGATCCAGATTGTATAATTTGGGCTCTTCGGGTCAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAAACAAGATCCAGATTGTATAATTTGGGCTCTTCGGGTCAATAA  477

seq1  AAGACTTCTAGTTATAACTGGACTTCCCTTGTAATATATTTGTGTCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTCTAGTTATAACTGGACTTCCCTTGTAATATATTTGTGTCCTTT  527

seq1  TGAGACAGATCTGTTATTTTATTTAATTTTTTAAACTTTAGTTTAGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGATCTGTTATTTTATTTAATTTTTTAAACTTTAGTTTAGAATT  577

seq1  CTGTTAGGTAAAGCACACTTAAAAACCACCATTCTTAATTTATTAGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGGTAAAGCACACTTAAAAACCACCATTCTTAATTTATTAGCTGT  627

seq1  CAATATAATGCTGTTTTTTTTTTTCAAAACTGAAGCTAATCAGTACAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATAATGCTGTTTTTTTTTTTCAAAACTGAAGCTAATCAGTACAAAA  677

seq1  AAAAAGTGAAGAGTACCTTGTTCTTCCCCCAGAATAAGAATTAATTACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGAAGAGTACCTTGTTCTTCCCCCAGAATAAGAATTAATTACAT  727

seq1  GTTTATTATTACTGTAGTTTATTAATATAGAAAAAGCTTATGACAGAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTATTACTGTAGTTTATTAATATAGAAAAAGCTTATGACAGAATC  777

seq1  CAGTGGGATATAACCCTAGTCAGTCAAAGATTTTACTGTATAGAAAAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGATATAACCCTAGTCAGTCAAAGATTTTACTGTATAGAAAAGAT  827

seq1  GACAATTTATAGATGTCCCACAGATTGAAAGTTTTGTATTTCTAAAGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTTATAGATGTCCCACAGATTGAAAGTTTTGTATTTCTAAAGTGA  877

seq1  AAATTTCATTAATATAATGTGTGGAAAATGGCAGTGTTTATAAATGTACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCATTAATATAATGTGTGGAAAATGGCAGTGTTTATAAATGTACA  927

seq1  GAAAATGATGATAAGTTTAAAATACAATAATCTCAGATACTCTCTTTCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGATGATAAGTTTAAAATACAATAATCTCAGATACTCTCTTTCTT  977

seq1  TGAAACAGAGAATAAGAATATTATAAATGCAGCAATCAAATCTCTGACAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAGAGAATAAGAATATTATAAATGCAGCAATCAAATCTCTGACAG  1027

seq1  ATGTGGAGGTAAAGCAGATTAGAAAGCCAAACAATAGTACTAATAGAGCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAGGTAAAGCAGATTAGAAAGCCAAACAATAGTACTAATAGAGCA  1077

seq1  TGATTTTTCTGCAGTTGCTTCGTTGGTCTGTTCCTGTCACATGCTTTAAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTCTGCAGTTGCTTCGTTGGTCTGTTCCTGTCACATGCTTTAAA  1127

seq1  ATGTCCATCTGTCCAGAAGGTTAAGAATTC  1180
      ||||||||||||||||||||||||||||||
seq2  ATGTCCATCTGTCCAGAAGGTTAAGAATTC  1157

seq1: chr5_58172476_58173582
seq2: B6Ng01-116L04.g_67_1167

seq1  GAATTCTTTTATTAGGCTCCAAGTCATTCACTCTCTGAAGTAAGAGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTATTAGGCTCCAAGTCATTCACTCTCTGAAGTAAGAGCAAA  50

seq1  CCATTTAAGGTGAGAAAGGGGTATTCATTATGATGGCATTTCCTTTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAAGGTGAGAAAGGGGTATTCATTATGATGGCATTTCCTTTCCTG  100

seq1  GCTGATTTGGTGGGTAATATCTAAAAGCTTCTGTTCTTTAGCAATGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTTGGTGGGTAATATCTAAAAGCTTCTGTTCTTTAGCAATGTGTA  150

seq1  AATAATATTGACAAATGTGACTGTGAATATATGTGTGCACACAACTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATTGACAAATGTGACTGTGAATATATGTGTGCACACAACTCACA  200

seq1  CATCAAATAATTTAATTATGATCAAGAATGATATCTACATAAGCTTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAATAATTTAATTATGATCAAGAATGATATCTACATAAGCTTCAAG  250

seq1  AAAACAGCATACCATGTTCATTTATAGTGGCTTACGAAATGTATAATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCATACCATGTTCATTTATAGTGGCTTACGAAATGTATAATTGT  300

seq1  GCTTATTTTTAAAAAAAAAACATGTCCCAAAGGGAGGCAGTTGCTCCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTTTTAAAAAAAAAACATGTCCCAAAGGGAGGCAGTTGCTCCTAT  350

seq1  GTTTGAAAGTAAAAATAAAATAGTAATTTTTGTGCAAACAGTGTAGTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAAGTAAAAATAAAATAGTAATTTTTGTGCAAACAGTGTAGTGAA  400

seq1  AAATAGATTTGTTAGGAACCCTACTCTTAACTTGGGTCCCTGAGTTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATTTGTTAGGAACCCTACTCTTAACTTGGGTCCCTGAGTTAAGA  450

seq1  ATATCACTTATTCATATGCAATTTCATATAACAAGATTCCTATCTCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACTTATTCATATGCAATTTCATATAACAAGATTCCTATCTCCAGG  500

seq1  TTCTACTTTCTTCCATGTGAAGAGAGCAAAGTTCAGATTACTACTTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTTCTTCCATGTGAAGAGAGCAAAGTTCAGATTACTACTTCACA  550

seq1  AGGTCTTTGTAAGGTTAAATTAAAAGCCACATACGATATTTTAATAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTTGTAAGGTTAAATTAAAAGCCACATACGATATTTTAATAAACA  600

seq1  TTCTTGTGAAGAAAAAAATTCATTCATATGTTGGCAAGTTCAGAGAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGAAGAAAAAAATTCATTCATATGTTGGCAAGTTCAGAGAGGAA  650

seq1  GATATAAAAGTGTATTAGATATGAACATTACATGACACGGGATCTTTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAAAAGTGTATTAGATATGAACATTACATGACACGGGATCTTTCAT  700

seq1  AAGGAAATACATCAAAGAAGCAGGAAGACATTTTTATGGTTACATTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATACATCAAAGAAGCAGGAAGACATTTTTATGGTTACATTTCAT  750

seq1  GAGAAGTGGAGAGTCAGTGAGAAGTTTGTTGGGACAGGAAGCGTGAACCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTGGAGAGTCAGTGAGAAGTTTGTTGGGACAGGAAGCGTGAACCG  800

seq1  ATAGTTATGCACCAGTAGGGAGATAGCATGGCTGCTTTGTGCAGATTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTATGCACCAGTAGGGAGATAGCATGGCTGCTTTGTGCAGATTCAT  850

seq1  GTGTGGCCCTGTGTTTTCAGAGATAAGGATATTCTTTTCCTCTCGGTATA  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTGTGGCCCTGTGTTTTCAGAGATAAGGATATTC-TTTCCTCTCGGTATA  899

seq1  CACAGTTCAGCTACAGAAGTCTTCCAAGTGATAATAGATAGATGACCTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTCAGCTACAGAAGTCTTCCAAGTGATAATAGATAGATGACCTGC  949

seq1  TTGAGGAAGGCAGCAGGAAGGTGAGGGGCCATCTGCTTCCTCCGTTTGCT  1000
      |||||| ||||||||||||| ||| ||||||||||||| |||||||||||
seq2  TTGAGG-AGGCAGCAGGAAGTTGA-GGGCCATCTGCTT-CTCCGTTTGCT  996

seq1  CAACTGTGAATGTGCCTTGTACTGGGGCCCTGTATACTAGCTGTGACAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTGAATGTGCCTTGTACTGGGGCCCTGTATACTAGCTGTGACAGC  1046

seq1  TTCACATTAACAGTCATCGCAGTTTACAGTTTTTGTAAATTATTCATATA  1100
      |||||||||||||||||||||||||| || |||||| |||||||||||| 
seq2  TTCACATTAACAGTCATCGCAGTTTA-AG-TTTTGTTAATTATTCATATG  1094

seq1  GATGACA  1107
      |||||||
seq2  GATGACA  1101