BAC Information

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BAC

Clone NameB6Ng01-116M18
Chromosome5 (Build37)
Map Location 31,753,241 - 31,901,934
singlet/doubletdoublet
Overlap geneZfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap
Upstream geneOtof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr
Downstream geneMrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116M18.bB6Ng01-116M18.g
ACCDH921706DH921707
length1,0461,113
definitionDH921706|Mus musculus domesticus DNA, BAC clone: B6Ng01-116M18, 5' end.DH921707|Mus musculus domesticus DNA, BAC clone: B6Ng01-116M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,900,887 - 31,901,934)(31,753,241 - 31,754,367)
sequence
gaattccaggccagccaaagctgcatagtgaaaccctgtctcaaaaacaa
gcaagcaagcaagcaagcaagcatagtcatgggctgcaggcagagatggc
tgcttctgcagagaactgaggtccgtttcccaggatccacagcaggccac
tcacacttgcctgtgactctagtacaaggctccagctccctcttctggcc
tccaagagcacctgcacacatgtggcacacatcagacagacaggcacaca
catactcaggaataaaaataaattttaaaaacaattttaaatgagcggtc
acatgctgagcatggtggctcctaccagtaatccaaacactcaagagggc
tgatacagcagaggaggaacatcaagagtctgaggccatcctggtctaca
gtgtgagaccttttcacagcatggataagcaaacgctagcattctgtcct
aagtctatcctttggcacaggcggcagcacactcttcgtaagggagagct
gaacaacctaatggaaggaggaaatcagagctgagaagattcagcaggaa
ccctcactttgcagatgggaaaactaaggaccaggtcagttggttaacca
acgatgcacgtgacatcactcatacaatgctgccccacaggctggagcag
ctcagaattcaagcttctggtcctctgtcctgtttcacagattccctttc
ccattgccagattgttgtacttactttaactgctaaaagtttgtcctgga
gcgccctcccctggttctcagcaagccatcagggcggctgtggtataaac
catggctctccatcttgagcctgccacacaatcacctgtgggtttggttt
aaacagactgttgggcaccactccaggagttttcaagatctggggtggca
tctcaaattctttctttttttcttttgggtcttggagacagggtctggct
atgtagctcaggctggcctccactgacagcagttccctcacctcctgagc
tagaattactgtatgtacccagaactcagctttggagaggtggggg
gaattccagaggtattcttcatattcattcaaactactaacagaggagtt
tcaggctggattaggggctcgaagaagctctatcggttctttcctgggca
tacaacagaatgtctgggaaagtcatgtctgtaggcagcgactacctagg
aaatacctctccagtatgctaatgctggggaatgtcatgggaaccactat
ggaaaggaagccttgttttcagtcatttgtaacagaaggctccactatgg
acatctaccaatctattcttaatttttggggttccagctgaactaatggt
attttctcaaagcctgctagaaagggtttcaaggactgtttctcagactt
cagtggttaaaaactatattcagagacatattttatgtcacagtaatgag
aaaagaatgcctttaacgatgtcaacactctgctcaacatcttccataat
ccagcaatactctggtagtagattgggagtcaagaaaactagttcaaagt
tcagcgacatattccaggaagtcactgagcatgtgtctgtctcttgtacc
ggggctgagtttacttccttgatgaaatcagagtcattaaagtccctccc
agagaaacagtcttagttcctctgtaagaacttatcatagctctttgata
gaagacataacagtctctttaaggggagaggccacagttcctcaatgaga
agtcctcaaaatccctcagggagtagctttccaagtccttcagggaagag
ccctagaagtcacttgaggtggagcccttgtagtccctcagaaggaacct
tcacagtccctcagggagaagctttgtagacttctagagagaagagggca
cattccttctgtggaggagagtctacacagtctttcaggaggagtcagca
gactctctattctctgagatgcctcagtccctcaaaacgagcatctcagt
ctctcgtgacgtcactgggcagtcattcagaaagagcatggttatttctc
tgaaagatccttttccgttccctctggttggaaggacaagttctggatta
ggccacttctttctagaacggcatgttcagactcatccgcttgagaagat
cgaatgtaacttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31900887_31901934
seq2: B6Ng01-116M18.b_46_1091 (reverse)

seq1  CCCCCACCTCT-CAAAGCTGAG-TCTGGGTACATAACAGTAATTCTAGCC  48
      ||||||||||| |||||||||| ||||||||||| ||||||||||||| |
seq2  CCCCCACCTCTCCAAAGCTGAGTTCTGGGTACAT-ACAGTAATTCTAG-C  48

seq1  TCAGGAGGTGAGGGAACTGCTGTCAGGTGGAGGCCAGCCTGAGCTACATA  98
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCAGGAGGTGAGGGAACTGCTGTCA-GTGGAGGCCAGCCTGAGCTACATA  97

seq1  GCCAGACCCTGTCTCCAAGACCCAAAAGAAAAAAAAGAAAGAATTTGAGA  148
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCCAGACCCTGTCTCCAAGACCCAAAAG-AAAAAAAGAAAGAATTTGAGA  146

seq1  TGCCACCCCAGATCTTGAAAACTCCTGGAGTGGTGCCCAACAGTCTGTTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCCCAGATCTTGAAAACTCCTGGAGTGGTGCCCAACAGTCTGTTT  196

seq1  AAACCAAACCCACAGGTGATTGTGTGGCAGGCTCAAGATGGAGAGCCATG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAACCCACAGGTGATTGTGTGGCAGGCTCAAGATGGAGAGCCATG  246

seq1  GTTTATACCACAGCCGCCCTGATGGCTTGCTGAGAACCAGGGGAGGGCGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATACCACAGCCGCCCTGATGGCTTGCTGAGAACCAGGGGAGGGCGC  296

seq1  TCCAGGACAAACTTTTAGCAGTTAAAGTAAGTACAACAATCTGGCAATGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACAAACTTTTAGCAGTTAAAGTAAGTACAACAATCTGGCAATGG  346

seq1  GAAAGGGAATCTGTGAAACAGGACAGAGGACCAGAAGCTTGAATTCTGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGAATCTGTGAAACAGGACAGAGGACCAGAAGCTTGAATTCTGAG  396

seq1  CTGCTCCAGCCTGTGGGGCAGCATTGTATGAGTGATGTCACGTGCATCGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCAGCCTGTGGGGCAGCATTGTATGAGTGATGTCACGTGCATCGT  446

seq1  TGGTTAACCAACTGACCTGGTCCTTAGTTTTCCCATCTGCAAAGTGAGGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAACCAACTGACCTGGTCCTTAGTTTTCCCATCTGCAAAGTGAGGG  496

seq1  TTCCTGCTGAATCTTCTCAGCTCTGATTTCCTCCTTCCATTAGGTTGTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTGAATCTTCTCAGCTCTGATTTCCTCCTTCCATTAGGTTGTTC  546

seq1  AGCTCTCCCTTACGAAGAGTGTGCTGCCGCCTGTGCCAAAGGATAGACTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCCCTTACGAAGAGTGTGCTGCCGCCTGTGCCAAAGGATAGACTT  596

seq1  AGGACAGAATGCTAGCGTTTGCTTATCCATGCTGTGAAAAGGTCTCACAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGAATGCTAGCGTTTGCTTATCCATGCTGTGAAAAGGTCTCACAC  646

seq1  TGTAGACCAGGATGGCCTCAGACTCTTGATGTTCCTCCTCTGCTGTATCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGATGGCCTCAGACTCTTGATGTTCCTCCTCTGCTGTATCA  696

seq1  GCCCTCTTGAGTGTTTGGATTACTGGTAGGAGCCACCATGCTCAGCATGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTTGAGTGTTTGGATTACTGGTAGGAGCCACCATGCTCAGCATGT  746

seq1  GACCGCTCATTTAAAATTGTTTTTAAAATTTATTTTTATTCCTGAGTATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGCTCATTTAAAATTGTTTTTAAAATTTATTTTTATTCCTGAGTATG  796

seq1  TGTGTGCCTGTCTGTCTGATGTGTGCCACATGTGTGCAGGTGCTCTTGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCTGTCTGTCTGATGTGTGCCACATGTGTGCAGGTGCTCTTGGA  846

seq1  GGCCAGAAGAGGGAGCTGGAGCCTTGTACTAGAGTCACAGGCAAGTGTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAAGAGGGAGCTGGAGCCTTGTACTAGAGTCACAGGCAAGTGTGA  896

seq1  GTGGCCTGCTGTGGATCCTGGGAAACGGACCTCAGTTCTCTGCAGAAGCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTGCTGTGGATCCTGGGAAACGGACCTCAGTTCTCTGCAGAAGCA  946

seq1  GCCATCTCTGCCTGCAGCCCATGACTATGCTTGCTTGCTTGCTTGCTTGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTCTGCCTGCAGCCCATGACTATGCTTGCTTGCTTGCTTGCTTGC  996

seq1  TTGTTTTTGAGACAGGGTTTCACTATGCAGCTTTGGCTGGCCTGGAATTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGAGACAGGGTTTCACTATGCAGCTTTGGCTGGCCTGGAATTC  1046

seq1: chr5_31753241_31754367
seq2: B6Ng01-116M18.g_69_1181

seq1  GAATTCCAGAGGTATTCTTCATATTCATTCAAACTACTAACAGAGGAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGGTATTCTTCATATTCATTCAAACTACTAACAGAGGAGTT  50

seq1  TCAGGCTGGATTAGGGGCTCGAAGAAGCTCTATCGGTTCTTTCCTGGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTGGATTAGGGGCTCGAAGAAGCTCTATCGGTTCTTTCCTGGGCA  100

seq1  TACAACAGAATGTCTGGGAAAGTCATGTCTGTAGGCAGCGACTACCTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAGAATGTCTGGGAAAGTCATGTCTGTAGGCAGCGACTACCTAGG  150

seq1  AAATACCTCTCCAGTATGCTAATGCTGGGGAATGTCATGGGAACCACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTCTCCAGTATGCTAATGCTGGGGAATGTCATGGGAACCACTAT  200

seq1  GGAAAGGAAGCCTTGTTTTCAGTCATTTGTAACAGAAGGCTCCACTATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAAGCCTTGTTTTCAGTCATTTGTAACAGAAGGCTCCACTATGG  250

seq1  ACATCTACCAATCTATTCTTAATTTTTGGGGTTCCAGCTGAACTAATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTACCAATCTATTCTTAATTTTTGGGGTTCCAGCTGAACTAATGGT  300

seq1  ATTTTCTCAAAGCCTGCTAGAAAGGGTTTCAAGGACTGTTTCTCAGACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCAAAGCCTGCTAGAAAGGGTTTCAAGGACTGTTTCTCAGACTT  350

seq1  CAGTGGTTAAAAACTATATTCAGAGACATATTTTATGTCACAGTAATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTAAAAACTATATTCAGAGACATATTTTATGTCACAGTAATGAG  400

seq1  AAAAGAATGCCTTTAACGATGTCAACACTCTGCTCAACATCTTCCATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATGCCTTTAACGATGTCAACACTCTGCTCAACATCTTCCATAAT  450

seq1  CCAGCAATACTCTGGTAGTAGATTGGGAGTCAAGAAAACTAGTTCAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAATACTCTGGTAGTAGATTGGGAGTCAAGAAAACTAGTTCAAAGT  500

seq1  TCAGCGACATATTCCAGGAAGTCACTGAGCATGTGTCTGTCTCTTGTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGACATATTCCAGGAAGTCACTGAGCATGTGTCTGTCTCTTGTACC  550

seq1  GGGGCTGAGTTTACTTCCTTGATGAAATCAGAGTCATTAAAGTCCCTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGAGTTTACTTCCTTGATGAAATCAGAGTCATTAAAGTCCCTCCC  600

seq1  AGAGAAACAGTCTTAGTTCCTCTGTAAGAACTTATCATAGCTCTTTGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACAGTCTTAGTTCCTCTGTAAGAACTTATCATAGCTCTTTGATA  650

seq1  GAAGACATAACAGTCTCTTTAAGGGGAGAGGCCACAGTTCCTCAAGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAAGACATAACAGTCTCTTTAAGGGGAGAGGCCACAGTTCCTCAATGAGA  700

seq1  AGTCCTCAAAATCCCTCAGGGAGTAGCTTTCCAAGTCCTTCAGGGAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCAAAATCCCTCAGGGAGTAGCTTTCCAAGTCCTTCAGGGAAGAG  750

seq1  CCCTAGAAGTCACTTGAGGTGGAGCCCTTGTAGTCCCTCAGGAAGGAACC  800
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCCTAGAAGTCACTTGAGGTGGAGCCCTTGTAGTCCCTCA-GAAGGAACC  799

seq1  TTCACAGTCCCTCAGGGAGAAGCCCTTGTAGACTTCTAGAGAGAAGAGGG  850
      |||||||||||||||||||||| | |||||||||||||||||||||||||
seq2  TTCACAGTCCCTCAGGGAGAAG-CTTTGTAGACTTCTAGAGAGAAGAGGG  848

seq1  CACATTCCTTCTGTGAAGAAGAGTCTACACAGTCTTTCAGGGAGGAGTCA  900
      ||||||||||||||| || |||||||||||||||||||| ||||||||||
seq2  CACATTCCTTCTGTGGAGGAGAGTCTACACAGTCTTTCA-GGAGGAGTCA  897

seq1  GCAGACTCTCTATTCTCTGAGATGCCTCAGTCCCTCAAAAACGAGCCATC  950
      |||||||||||||||||||||||||||||||||||| |||||||| ||||
seq2  GCAGACTCTCTATTCTCTGAGATGCCTCAGTCCCTC-AAAACGAG-CATC  945

seq1  TCAGTCTCTCGTGGACGTCACTGGGCAGTCATTCAGAAAGGAGCCATGGT  1000
      |||||||||||| |||||||||||||||||||||||||| ||| ||||||
seq2  TCAGTCTCTCGT-GACGTCACTGGGCAGTCATTCAGAAA-GAG-CATGGT  992

seq1  AATTTCTCTGAAAGATCCTTTTCCGTTCCCTCTGGTTGGAAAGGACATAG  1050
       |||||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  TATTTCTCTGAAAGATCCTTTTCCGTTCCCTCTGGTTGG-AAGGACA-AG  1040

seq1  TTCTGGATCAAGCCCACTTCTTCTAAGAACAGGCATTGTTCCAGACTCAT  1100
      ||||||||  || |||||||||   ||||| |||| |||| |||||||||
seq2  TTCTGGAT-TAGGCCACTTCTTTCTAGAAC-GGCA-TGTT-CAGACTCAT  1086

seq1  CCGCTGGAG-AGATCCAGATGTAACTTG  1127
      ||||| ||| ||||| | ||||||||||
seq2  CCGCTTGAGAAGATCGA-ATGTAACTTG  1113