BAC Information

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BAC

Clone NameB6Ng01-116N13
Chromosome5 (Build37)10 (Build37)
Map Location 146,505,564 - 146,506,766104,053,634 - 104,054,363
singlet/doubletsingletsinglet
Overlap geneCyp3a41
Upstream geneTmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065
Downstream geneCyp3a44, Cyp3a11, Cyp3a25, LOC667098, LOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8, Wasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116N13.bB6Ng01-116N13.g
ACCDH921742DH921743
length1,193755
definitionDH921742|Mus musculus domesticus DNA, BAC clone: B6Ng01-116N13, 5' end.DH921743|Mus musculus domesticus DNA, BAC clone: B6Ng01-116N13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,505,564 - 146,506,766)(104,053,634 - 104,054,363)
sequence
gaattcatgtgatcaaaatgtattctatgaagttctcaacaaatattaaa
acgcttgaaatgaggatttttaataagtgtttatttacattttctgtgca
gcatttattataaaatatggcaactaaagcatctgataacaattctacaa
ttagagatgttacaatagctcacattttcatcaaaaatttttgttcaaat
tacaaacacttggttactatcaaaagatctcaaaaggaattagcagagac
aatgagatgtggatggagatggtcccatgagaaccagtgaaggcaaattt
gctgtgctgtcactaatttattcatctctttttaattagatgataacctg
tacagacactgagaaagctcagtggatgtactgaatctttaaccatgaat
caaaatcaatctattaagccccttattcatctcgattttactcatgatga
aactaacatatctgatgttcttagacactgcctttctgaagaactcagca
gaactccttgagggaaactcatgctccagttataactacatcccgtggta
caacctttagaacaatgggtttttctggttgaagaagtccttgtctgctt
aatttcagaggtatctgcaataggggaagaaaaatattgagaaccagtga
atgaatcaacaaaatcaccaaaagaaaagtaaaacaagataaaacaagag
tttggcataatatgctatgaaggaaaaaagaactgcattcaaagtcatat
gttttccgtgccttttcctccaagctgtctcacttgggtggtgagagtat
gcatccaaatacacattatgtaaagtggtgattgagaagttactgttttc
aggacctgaaacaatctcatgctggtttatactaatattgtgtgctgatt
tagagtacaagaaatgagttccacatttttaaccttattcttagtcttta
tgtcatattgatttttttaagtcatataaagttatttttggttttaagct
tgcagataccatgtgagtatacctgtcatgctattaacattctcagctcc
agatcatgtataactcacagtcagcccgtttatgggaagtctttctgaag
aaacatttgttggcttttctagcatctatttcttgggcttcaggagtggg
ggaatggaagtttctggagcgcagggttttcaatatactttag
gaattctcacctgtggaataccgaatggctgagaagcatctgcaaaaatg
ttcaacatccttaatcatcagggaaattcaaatcaaaacaatcctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgagaatgtgaagaaagaggtacattcctccattgttggtg
ggattgcaagcttgtacaacccctctggaaatcattctggcagttcctca
gaaaattggacatagtagtaccggaggatcccgcaataactctcctgggc
atatatcccaaagatgatccaaccggtaaataggacacacgttccaatgt
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacggaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatggaattcctcggcaa
atgaatggacctggagagcaggtatttggctctgaggattttacattaac
gatttttttccatcctccttgccttataagagtcttcatgtggttgtggg
aagacaaaaactgtgaaaatattgcatccatgtgtgagcacacgctggtg
tcattgtagtgttatgggggtagggggaaccaaccctttttcttattgga
ttggaagttcaattaacagaggaaattaatgcccagtactgtaaatcctg
tcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_146505564_146506766
seq2: B6Ng01-116N13.b_46_1238

seq1  GAATTCATGTGATCAAAATGTATTCTATGAAGTTCTCAACAAATATTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTGATCAAAATGTATTCTATGAAGTTCTCAACAAATATTAAA  50

seq1  ACGCTTGAAATGAGGATTTTTAATAAGTGTTTATTTACATTTTCTGTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTTGAAATGAGGATTTTTAATAAGTGTTTATTTACATTTTCTGTGCA  100

seq1  GCATTTATTATAAAATATGGCAACTAAAGCATCTGATAACAATTCTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTATTATAAAATATGGCAACTAAAGCATCTGATAACAATTCTACAA  150

seq1  TTAGAGATGTTACAATAGCTCACATTTTCATCAAAAATTTTTGTTCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGATGTTACAATAGCTCACATTTTCATCAAAAATTTTTGTTCAAAT  200

seq1  TACAAACACTTGGTTACTATCAAAAGATCTCAAAAGGAATTAGCAGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACACTTGGTTACTATCAAAAGATCTCAAAAGGAATTAGCAGAGAC  250

seq1  AATGAGATGTGGATGGAGATGGTCCCATGAGAACCAGTGAAGGCAAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATGTGGATGGAGATGGTCCCATGAGAACCAGTGAAGGCAAATTT  300

seq1  GCTGTGCTGTCACTAATTTATTCATCTCTTTTTAATTAGATGATAACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCTGTCACTAATTTATTCATCTCTTTTTAATTAGATGATAACCTG  350

seq1  TACAGACACTGAGAAAGCTCAGTGGATGTACTGAATCTTTAACCATGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACACTGAGAAAGCTCAGTGGATGTACTGAATCTTTAACCATGAAT  400

seq1  CAAAATCAATCTATTAAGCCCCTTATTCATCTCGATTTTACTCATGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCAATCTATTAAGCCCCTTATTCATCTCGATTTTACTCATGATGA  450

seq1  AACTAACATATCTGATGTTCTTAGACACTGCCTTTCTGAAGAACTCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACATATCTGATGTTCTTAGACACTGCCTTTCTGAAGAACTCAGCA  500

seq1  GAACTCCTTGAGGGAAACTCATGCTCCAGTTATAACTACATCCCGTGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCTTGAGGGAAACTCATGCTCCAGTTATAACTACATCCCGTGGTA  550

seq1  CAACCTTTAGAACAATGGGTTTTTCTGGTTGAAGAAGTCCTTGTCTGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTTAGAACAATGGGTTTTTCTGGTTGAAGAAGTCCTTGTCTGCTT  600

seq1  AATTTCAGAGGTATCTGCAATAGGGGAAGAAAAATATTGAGAACCAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGAGGTATCTGCAATAGGGGAAGAAAAATATTGAGAACCAGTGA  650

seq1  ATGAATCAACAAAATCACCAAAAGAAAAGTAAAACAAGATAAAACAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCAACAAAATCACCAAAAGAAAAGTAAAACAAGATAAAACAAGAG  700

seq1  TTTGGCATAATATGCTATGAAGGAAAAAAGAACTGCATTCAAAGTCATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCATAATATGCTATGAAGGAAAAAAGAACTGCATTCAAAGTCATAT  750

seq1  GTTTTCCGTGCCTTTTCCTCCAAGCTGTCTCACTTGGGTGGTGAGAGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCGTGCCTTTTCCTCCAAGCTGTCTCACTTGGGTGGTGAGAGTAT  800

seq1  GCATCCAAATACACATTATGTAAAGTGGTGATTGAGAAGTTACTGTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCAAATACACATTATGTAAAGTGGTGATTGAGAAGTTACTGTTTTC  850

seq1  AGGACCTGAAACAATCTCATGCTGGTTTATACTAATATTGTGTGCTGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTGAAACAATCTCATGCTGGTTTATACTAATATTGTGTGCTGATT  900

seq1  TAGAGTACAAGAAATGAGTTCCACATTTTTAACCTTATTCTTAGTCTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTACAAGAAATGAGTTCCACATTTTTAACCTTATTCTTAGTCTTTA  950

seq1  TGTCATATTGATTTTTTTAAGTCATATAAAGTTATTTTTGGTTTTTAAGC  1000
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTCATATTGATTTTTTTAAGTCATATAAAGTTATTTTTGG-TTTTAAGC  999

seq1  TTGCAAGATAACCATGTGAGTATACCTGTCAATGCTATTAACAATTCTCA  1050
      |||| |||| |||||||||||||||||||| ||||||||||| |||||||
seq2  TTGC-AGAT-ACCATGTGAGTATACCTGTC-ATGCTATTAAC-ATTCTCA  1045

seq1  GCTCCAAGATCATGTATACACCTCAACAGTCAGCCCGTTTATGGAAAGTC  1100
      ||||| |||||||||||  | ||| ||||||||||||||||||| |||||
seq2  GCTCC-AGATCATGTAT--AACTC-ACAGTCAGCCCGTTTATGGGAAGTC  1091

seq1  -TTCTGAAAGAAACATATGTT-GCTTTTCTAGCATCTA-TTCTT-GGCTT  1146
       ||||| ||||||||| |||| |||||||||||||||| ||||| |||||
seq2  TTTCTG-AAGAAACATTTGTTGGCTTTTCTAGCATCTATTTCTTGGGCTT  1140

seq1  CCAAGGATGTGGTGAATGGGAATGTCTGACGCCGCAGGGTTTTCAATAAT  1196
      |  ||||   || |||||| | | ||||  | ||||||||||||||| ||
seq2  C--AGGAGTGGGGGAATGGAAGTTTCTGGAG-CGCAGGGTTTTCAAT-AT  1186

seq1  ACTTTAG  1203
      |||||||
seq2  ACTTTAG  1193

seq1: chr10_104053634_104054363
seq2: B6Ng01-116N13.g_71_588 (reverse)

seq1  CTCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAATTCATTCTTTTT  50
      |||||||||||||| |||||||| ||||||| ||||||||||||||||||
seq2  CTCTCCAGGTCCATTCATTTGCCGAGGAATTCCATAAATTCATTCTTTTT  50

seq1  AATAGCTCCATTTACATTTAATTTAATTAATGTAATTACAATTAATTAAT  100
      ||||||                                            
seq2  AATAGC--------------------------------------------  56

seq1  TTATTAATTAAATAATTTAATAATTTAATTGATAAATTAATTTAATTAAT  150
                                                        
seq2  --------------------------------------------------  56

seq1  TAATTTAATTAATTAAATTAAATAATAATTTAATAATAAATTAAATATTT  200
                                                        
seq2  --------------------------------------------------  56

seq1  TAAAATTAATAATAATTTTATAAGTAAATAATTTAATTAATGTAATTTAA  250
                          | ||||                        
seq2  --------------------TGAGTA------------------------  62

seq1  TTAATGTAATTACATTACATTTAATAGCTCCATTGTGTAAATGTACCACA  300
           |||                   |||||||||||||||||||||||
seq2  -----GTA-------------------CTCCATTGTGTAAATGTACCACA  88

seq1  TTTTCTGTATCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTC  350
      ||||||||||| ||||||| ||||||||||||||||||||||||||||| 
seq2  TTTTCTGTATCCATTCCTCCGTTGAGGGGCATCTGGGTTCTTTCCAGCTT  138

seq1  CTGGCTATTATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTT  400
      ||||||||||||||||||||||||||||| | | |||| | |||||||| 
seq2  CTGGCTATTATAAATAAGGCTGCTATGAACACATTGGAACGTGTGTCCTA  188

seq1  CTTACCGGTTGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTG  450
       |||||||||||  ||||||  |||||||||||||| |||| |||||| |
seq2  TTTACCGGTTGGATCATCTTTGGGATATATGCCCAGGAGAGTTATTGCGG  238

seq1  GATCCTCCGGTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGAT  500
      |||||||||||| |||||||||||||||||||| |||| ||||||  |||
seq2  GATCCTCCGGTACTACTATGTCCAATTTTCTGAGGAACTGCCAGAATGAT  288

seq1  TTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGT  550
      |||||||| |||||||||||| |||||||||||||||||||||||| |||
seq2  TTCCAGAGGGGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAATGT  338

seq1  TCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGA  600
       ||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  ACCTCTTTCTTCACATTCTCGCCAGCATCTGCTGTCACCTGAATTTTTGA  388

seq1  TCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATT  650
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGATTGTTTTGATT  438

seq1  TGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTC  700
      || |||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  TGAATTTCCCTGATGATTAAGGATGTTGAACATTTTTGCAGATGCTTCTC  488

seq1  TGCCATTCGGTATTCCTCAGGTGAGAATTC  730
       ||||||||||||||| |||||||||||||
seq2  AGCCATTCGGTATTCCACAGGTGAGAATTC  518