BAC Information

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BAC

Clone NameB6Ng01-117D15
Chromosome5 (Build37)
Map Location 15,112,598 - 15,113,390
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
Downstream geneSpeer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117D15.bB6Ng01-117D15.g
ACCDH922020DH922021
length1,075723
definitionDH922020|Mus musculus domesticus DNA, BAC clone: B6Ng01-117D15, 5' end.DH922021|Mus musculus domesticus DNA, BAC clone: B6Ng01-117D15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgtttttaatagctgagtaaatgtgtaaatgtaccatatttt
ctgtatccattcctctgctgaaggacatctgggttctttccagatcctgg
ctattaaaataaggctgctatgaacatagtggaacatgtgtccttattac
aacatcttctggatatatatccagaagtggtatacctgggtactatgtcc
acttttctgaggtactgccaaactgaattccagagtggttgtaccagttt
gcaatcccaccagcaatggcgctcttctttttgcacatccttgccagcat
ctgtgatcacctgagcttctgatcttagccattctgactggtgtgaggtg
gaatctcagggtcattttgatttgtgtttccctgatgactaatgatgttg
aacatttctttaggtgcttatcagccattcaagtttcctcagttaaaact
tctctgtttaggtctgatccccatttttaataggattatttagttctcag
gagtctaacttcatgagttctttttatatattggatattagccctctata
ggatgaaggattgataacgatcttttcccaatctgttggttgcctttttg
tcttattgacagttttctttgccttagagaagctttgcagttttatgagg
tcccattttttgattcttaatctttcagcataagccatttttgttctgtt
caggaaatttccccccatgcccatgtgttcaaggctattccccactttct
gttttattagtttcagtgaatcttggttttatatggcggttcttgatcca
cttggacataagctttgtacaaggagataagaatggatccatttgccttc
ttctacatgataactgccagttgaccagcaccatttgttgaaaatgctgt
cttttccaactgaatgggtttacctccttgacaaagatcaagtgaccaga
ggtggtgggttcatttctgggtctcaattcaattccactgatctatctgg
ctctctctgtacatacataagtttatcacatgctctgtatcagtcgaggg
tagggatggggatcccaaagtcttt
gaattcctcttctcaggtacaactgggtctttgtcaagttgataaaatgc
aagaaacatatcgtgcaaatgaaacggaagcagcactgaaagtctgagta
gccggggggcatccctgcacatgtgcctgtgggtagctgacagatcagct
ggtttaaaagcaaggctggtggtctagtcaatcatggtcgctgttctagt
gctaaaccagattctggagaaagctctattgttgttaagacttgagagga
gcttggtggctgattatgggatggatccccgggtggggtagtctctggat
ggtccatcctttcgtcttagctttgtctctgtaactccttccatgggtat
tttgttccctattctgacactactgcatatgccagcaagattttgctgaa
aggaccttgatatagctgtcttgtgaggctatgccagtacctggcaaaca
gaagtggatgctcacagtcatttataggatgcagcacagggcctccaatg
gagaagctagagaaagcacccaaggagctgaagggatctgcaaccctata
ggtggaacaacaatatgaactaaccagtacccccagaacttgtgtctcta
gctgcatatatagcagaagatggcctagtcggccatcattgggaagagag
gcccctaggtcttgcaaactttatatgccccagtacagggccaagaaatg
ggagtgggtgggtggggggagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15112598_15113390
seq2: B6Ng01-117D15.g_1_792

seq1  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  50
                                                        
seq2  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  50

seq1  NNNNNNNNNNNNNNNNNNNGAATTCCTCTTCTCAGGTACAACTGGGTCTT  100
                         |||||||||||||||||||||||||||||||
seq2  NNNNNNNNNNNNNNNNNNNGAATTCCTCTTCTCAGGTACAACTGGGTCTT  100

seq1  TGTCAAGTTGATAAAATGCAAGAAACATATCGTGCAAATGAAACGGAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGTTGATAAAATGCAAGAAACATATCGTGCAAATGAAACGGAAGC  150

seq1  AGCATTGAAAGTCTGAGTAGCCGGTGGGCATCCCTGCACATGTGCCTGTG  200
      |||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGCACTGAAAGTCTGAGTAGCCGGGGGGCATCCCTGCACATGTGCCTGTG  200

seq1  GGTAGCTGACAGATCAGCTGGTTTAAAAGCAAGGCTGGTGGTCTAGTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTGACAGATCAGCTGGTTTAAAAGCAAGGCTGGTGGTCTAGTCAA  250

seq1  TCATGGTCGCTGTTCTAGTGCTAAACCAGATTCTGGAGAAAGCTCTATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTCGCTGTTCTAGTGCTAAACCAGATTCTGGAGAAAGCTCTATTG  300

seq1  TTGTTAAGACTTGAGAGGAGCTTGGTGGCTGATTATGGGATGGATCATCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  TTGTTAAGACTTGAGAGGAGCTTGGTGGCTGATTATGGGATGGATCCCCG  350

seq1  GGTGGGGTAGTCTCTGGATGGTCCATCCTTTCTTCTTAGCTTTGTCTCCG  400
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  GGTGGGGTAGTCTCTGGATGGTCCATCCTTTCGTCTTAGCTTTGTCTCTG  400

seq1  TAACTCCTTCCATGGCTTTTTTGTTCCCTATTCTGACACTACTGCATATG  450
      ||||||||||||||| | ||||||||||||||||||||||||||||||||
seq2  TAACTCCTTCCATGGGTATTTTGTTCCCTATTCTGACACTACTGCATATG  450

seq1  CCAGCAAGATTTTGCTGAAAGGACCTTGATATAGCTGTCTTGTGAGGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAGATTTTGCTGAAAGGACCTTGATATAGCTGTCTTGTGAGGCTA  500

seq1  TGCCAGTGCCTGGCAAACACAGAAGTGGATGCTCACAGTCATCTATAGGA  550
      ||||||| ||||||||  |||||||||||||||||||||||| |||||||
seq2  TGCCAGTACCTGGCAA--ACAGAAGTGGATGCTCACAGTCATTTATAGGA  548

seq1  TGGAGCACAGGGCCTCCAATGGAGAAGCTAGAGAAAGCACCCAAGGAGCT  600
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCACAGGGCCTCCAATGGAGAAGCTAGAGAAAGCACCCAAGGAGCT  598

seq1  GAAGGGATCTGCAACCCTATAAGTGGAACAACAATATGAACTAACCAGTA  650
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAAGGGATCTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTA  648

seq1  CCCCCAGAGCTTGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGT  700
      |||||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  CCCCCAGAACTTGTGTCTCTAGCTGCATATATAGCAGAAGATGGCCTAGT  698

seq1  CAGCCAGCATTGGGAAGAGAGGCCCCTAGGTCTTGCAAACTTTATATGCC  750
      | |||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCATCATTGGGAAGAGAGGCCCCTAGGTCTTGCAAACTTTATATGCC  748

seq1  GCAGTACAGGGCCAAGAAATAGGAGTGGGTGGGT-GGGGGAGCA  793
       ||||||||||||||||||| ||||||||||||| |||||||||
seq2  CCAGTACAGGGCCAAGAAATGGGAGTGGGTGGGTGGGGGGAGCA  792