BAC Information

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BAC

Clone NameB6Ng01-117D17
Chromosome5 (Build37)
Map Location 100,690,359 - 100,744,769
singlet/doubletdoublet
Overlap geneLOC666417
Upstream geneA930011G23Rik, LOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109
Downstream geneSec31a, LOC100041797, Lin54, Cops4, Plac8, Coq2, Hpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik, LOC100041888, LOC100040902, Cycs-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117D17.bB6Ng01-117D17.g
ACCDH922024DH922025
length1,1331,085
definitionDH922024|Mus musculus domesticus DNA, BAC clone: B6Ng01-117D17, 5' end.DH922025|Mus musculus domesticus DNA, BAC clone: B6Ng01-117D17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,743,614 - 100,744,769)(100,690,359 - 100,691,472)
sequence
gaattctgccaggtgctccaggttctcacagtcctgctctaaaaaatgat
ataccatgttggtcccctgcagatcacagggtttaaaattaaaatgaaga
gaactgaaaaaatgtcaaaacagcaagaattcggtgctggctcctctctg
tggttggtggtctggcatcttctgtgcacccgaggaggcaacagtcccag
caggtaccctaagcaggttcccagagcagtcctccccccagcaggtaccc
agagcagcccttcccttccccccagcaggttcccagagcagctctgcccc
tcacccttcagtgggtgcctagagcagtcccccacttccagcagatatcc
taagcaggcccccagaccagtcctccccccaccagtaggtgcccagagcg
ggcacccagggcaggctcccgaagcaggtgcccagagcagagaggttagg
cttgcttgacactgtctgcttttagtgggagcctttctcaaagcagcagc
tgcccaagagggagcgctatcacctacgttcagaggagaagtaaaaatcc
cattttctgtcaggacataacattctctagatgatccttgaaggcagatt
agtaagcaagagaaacgccaacaggttctaggatatgtgcttcatacaca
gaagcatcctaggagctctaggaatggccagcacagggcctctcgaagac
tttaaaaaattcattcttcagtcatttcgtgtatgatgtagtgtatttag
acatatccagtaactgcttcgtcccccagttcctggcagactcccctcac
atccctgcatcctgtcccagcttcatgttcccccttcctcctcctgagtg
cagctagtcctgcctatgagtggaaagtgccaacctctggagcatgggca
acctaccacgggccatctccctgcagacatctgacttgccttcccaaagg
gaccatcaacttccagtatccccttgtcttagttagggtttactgctgtg
aacagacacatgacaagcaactctcataaggacacatttatggggctgct
acaggttcgtggtcagtccattatcatgagcggaactgaagtcaggcagc
atggtgctgaggagctagagtctacatcttgtt
gaattcagtgctatctccacacacgtatcacacacacacacacacacaca
cacacacacagacacacacacactggtggagaggagagacagagacagac
agacagaattatcattattagtagtagtagtagtgagggacttctcctta
tttcttctatgctctgtcttagaaatgtggtatgtatttttctcccacag
gacgtttctcttcaggctgtccacatcccagatgctcggtagctaaccat
agccattggctaccacactggacagtgtaggtctaactcacagctcctac
aaatgtcatgtatttcacttttccaagtttttaagaattcagtgctgcct
tggaggagatggtacatgccctcaggaggcagagatgggcagatctctgt
gagttcaaggccagtctggtctacatggtaagttccagaacagccagggc
tacacagtgagacttgtttcagtgttgcctgctggtgtgaatgtgaagct
ggcacagaggactaagtggcagagatgttcttacgttgtccatgactttt
aagctagcagatcatcatcttctggatgctggctttagggagcagctgtg
gctgtatacaaacacctggccacaagaatggtcaccagagtgagaacacg
agggaaactctgagattccacagaatagatttcaaccaatcactctgtga
tgcattaatcaagtaagtaccattcatatagtagaaagtgtctttctcta
tgtatgcataataatgtgcacatagacatttctggaaagaaatagttaag
taaagtcttagagtcacttcaagaggcagagatgagaaaaaatgcttttt
ctcttttatgctctgggatgactaagaccaattagtttgtggctaaattt
taacaaaaggatattgtgcaatgatagatgaccatcaaagcagtctcgtg
aagtagtttcaaatggtatgtatgctgtaacccacttttcacaacaaatg
tgtgtttatgcatagaaagtggaggatctataagtgactgaaaggtctcc
cccatatgagtctgtaggaatcccttagttcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_100743614_100744769
seq2: B6Ng01-117D17.b_47_1179 (reverse)

seq1  AACAAGATGTAGAACTCTTAGCTCCTCCAGCACCATGCCTGCCTGGACTT  50
      |||||||||||| |||| |||||||| |||||||||| |||||| |||||
seq2  AACAAGATGTAG-ACTC-TAGCTCCT-CAGCACCATG-CTGCCT-GACTT  45

seq1  TTCCATGTTCCCGCCTTCATGATAATGGACTGAACCACTGAACCTGTAAG  100
         || ||| ||||  |||||||||||||||| ||||| |||||||||  
seq2  ---CA-GTT-CCGC--TCATGATAATGGACTG-ACCAC-GAACCTGTA--  84

seq1  CCAGCCCCAATTAAATGTTGTCCTTATGAGAGTTGCCTTGGTCATGGTGT  150
       ||||||||  |||||| ||||||||||||||||||  | ||||| ||||
seq2  GCAGCCCCA--TAAATG-TGTCCTTATGAGAGTTGC--TTGTCAT-GTGT  128

seq1  CTGTTCACAGCAGTAAAACCCTAACTAAGACAAGGGGATACTGGAAGTTG  200
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTGTTCACAGCAGT-AAACCCTAACTAAGACAAGGGGATACTGGAAGTTG  177

seq1  ATGGTCCCTTTGGGAAGGCAAGTCAGATGTCTGCAGGGAGATGGCCCGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCCTTTGGGAAGGCAAGTCAGATGTCTGCAGGGAGATGGCCCGTG  227

seq1  GTAGGTTGCCCATGCTCCAGAGGTTGGCACCTTCCACTCATAGGCAGGAC  300
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTAGGTTGCCCATGCTCCAGAGGTTGGCACTTTCCACTCATAGGCAGGAC  277

seq1  TAGCTGCACTCAGGAGGAGGAAGGGGGAACATGAAGCTGGGACAGGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCACTCAGGAGGAGGAAGGGGGAACATGAAGCTGGGACAGGATGC  327

seq1  AGGGATGTGAGGGGAGTCTGCCAGGAACTGGGGGACGAAGCAGTTACTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGTGAGGGGAGTCTGCCAGGAACTGGGGGACGAAGCAGTTACTGG  377

seq1  ATATGTCTAAATACACTACATCATACACGAAATGACTGAAGAATGAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCTAAATACACTACATCATACACGAAATGACTGAAGAATGAATTT  427

seq1  TTTAAAGTCTTCGAGAGGCCCTGTGCTGGCCATTCCTAGAGCTCCTAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTCTTCGAGAGGCCCTGTGCTGGCCATTCCTAGAGCTCCTAGGA  477

seq1  TGCTTCTGTGTATGAAGCACATATCCTAGAACCTGTTGGCGTTTCTCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGTGTATGAAGCACATATCCTAGAACCTGTTGGCGTTTCTCTTG  527

seq1  CTTACTAATCTGCCTTCAAGGATCATCTAGAGAATGTTATGTCCTGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTAATCTGCCTTCAAGGATCATCTAGAGAATGTTATGTCCTGACAG  577

seq1  AAAATGGGATTTTTACTTCTCCTCTGAACGTAGGTGATAGCGCTCCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGATTTTTACTTCTCCTCTGAACGTAGGTGATAGCGCTCCCTCT  627

seq1  TGGGCAGCTGCTGCTTTGAGAAAGGCTCCCACTAAAAGCAGACAGTGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGCTGCTGCTTTGAGAAAGGCTCCCACTAAAAGCAGACAGTGTCA  677

seq1  AGCAAGCCTAACCTCTCTGCTCTGGGCACCTGCTTCGGGAGCCTGCCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCTAACCTCTCTGCTCTGGGCACCTGCTTCGGGAGCCTGCCCTG  727

seq1  GGTGCCCGCTCTGGGCACCTACTGGTGGGGGGAGGACTGGTCTGGGGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCCGCTCTGGGCACCTACTGGTGGGGGGAGGACTGGTCTGGGGGCC  777

seq1  TGCTTAGGATATCTGCTGGAAGTGGGGGACTGCTCTAGGCACCCACTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGGATATCTGCTGGAAGTGGGGGACTGCTCTAGGCACCCACTGAA  827

seq1  GGGTGAGGGGCAGAGCTGCTCTGGGAACCTGCTGGGGGGAAGGGAAGGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGGGGCAGAGCTGCTCTGGGAACCTGCTGGGGGGAAGGGAAGGGC  877

seq1  TGCTCTGGGTACCTGCTGGGGGGAGGACTGCTCTGGGAACCTGCTTAGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGGGTACCTGCTGGGGGGAGGACTGCTCTGGGAACCTGCTTAGGG  927

seq1  TACCTGCTGGGACTGTTGCCTCCTCGGGTGCACAGAAGATGCCAGACCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCTGGGACTGTTGCCTCCTCGGGTGCACAGAAGATGCCAGACCAC  977

seq1  CAACCACAGAGAGGAGCCAGCACCGAATTCTTGCTGTTTTGACATTTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACAGAGAGGAGCCAGCACCGAATTCTTGCTGTTTTGACATTTTTT  1027

seq1  CAGTTCTCTTCATTTTAATTTTAAACCCTGTGATCTGCAGGGGACCAACA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTCTTCATTTTAATTTTAAACCCTGTGATCTGCAGGGGACCAACA  1077

seq1  TGGTATATCATTTTTTAGAGCAGGACTGTGAGAACCTGGAGCACCTGGCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATATCATTTTTTAGAGCAGGACTGTGAGAACCTGGAGCACCTGGCA  1127

seq1  GAATTC  1156
      ||||||
seq2  GAATTC  1133

seq1: chr5_100690359_100691472
seq2: B6Ng01-117D17.g_71_1155

seq1  GAATTCAGTGCTATCTCCACACACGTATCACACACACACACACACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCTATCTCCACACACGTATCACACACACACACACACACACA  50

seq1  CACACACACAGACACACACACACTGGTGGAGAGGAGAGACAGAGACAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAGACACACACACACTGGTGGAGAGGAGAGACAGAGACAGAC  100

seq1  AGACAGAATTATCATTATTAGTAGTAGTAGTAGTGAGGGACTTCTCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAATTATCATTATTAGTAGTAGTAGTAGTGAGGGACTTCTCCTTA  150

seq1  TTTCTTCTATGCTCTGTCTTAGAAATGTGGTATGTATTTTTCTCCCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTATGCTCTGTCTTAGAAATGTGGTATGTATTTTTCTCCCACAG  200

seq1  GACGTTTCTCTTCAGGCTGTCCACATCCCAGATGCTCGGTAGCTAACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTTTCTCTTCAGGCTGTCCACATCCCAGATGCTCGGTAGCTAACCAT  250

seq1  AGCCATTGGCTACCACACTGGACAGTGTAGGTCTAACTCACAGCTCCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTGGCTACCACACTGGACAGTGTAGGTCTAACTCACAGCTCCTAC  300

seq1  AAATGTCATGTATTTCACTTTTCCAAGTTTTTAAGAATTCAGTGCTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCATGTATTTCACTTTTCCAAGTTTTTAAGAATTCAGTGCTGCCT  350

seq1  TGGAGGAGATGGTACATGCCCTCAGGAGGCAGAGATGGGCAGATCTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGATGGTACATGCCCTCAGGAGGCAGAGATGGGCAGATCTCTGT  400

seq1  GAGTTCAAGGCCAGTCTGGTCTACATGGTAAGTTCCAGAACAGCCAGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAGGCCAGTCTGGTCTACATGGTAAGTTCCAGAACAGCCAGGGC  450

seq1  TACACAGTGAGACTTGTTTCAGTGTTGCCTGCTGGTGTGAATGTGAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGTGAGACTTGTTTCAGTGTTGCCTGCTGGTGTGAATGTGAAGCT  500

seq1  GGCACAGAGGACTAAGTGGCAGAGATGTTCTTACGTTGTCCATGACTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGAGGACTAAGTGGCAGAGATGTTCTTACGTTGTCCATGACTTTT  550

seq1  AAGCTAGCAGATCATCATCTTCTGGATGCTGGCTTTAGGGAGCAGCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGCAGATCATCATCTTCTGGATGCTGGCTTTAGGGAGCAGCTGTG  600

seq1  GCTGTATACAAACACCTGGCCACAAGAATGGTCACCAGAGTGAGAACACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATACAAACACCTGGCCACAAGAATGGTCACCAGAGTGAGAACACG  650

seq1  AGGGAAACTCTGAGATTCCACAGAATAGATTTCAACCAATCACTCTGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACTCTGAGATTCCACAGAATAGATTTCAACCAATCACTCTGTGA  700

seq1  TGCATTAATCAAGTAAGTACCATTCATATAGTAGAAAGTGTCTTTCTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTAATCAAGTAAGTACCATTCATATAGTAGAAAGTGTCTTTCTCTA  750

seq1  TGTATGCATAATAATGTGCACATAGACATTTCTGGAAAGAAATAGTTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCATAATAATGTGCACATAGACATTTCTGGAAAGAAATAGTTAAG  800

seq1  TAAAGTCTTAGAGTCACTTCAAGAGGCAGAGATGAGAAAAAATGCTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCTTAGAGTCACTTCAAGAGGCAGAGATGAGAAAAAATGCTTTTT  850

seq1  CTCTTTTATGCTCTGGGATGACTAAAGACCAATTAGTTTTGTGGCTAAAA  900
      ||||||||||||||||||||||| |||||||||||| ||||||||| |||
seq2  CTCTTTTATGCTCTGGGATGACT-AAGACCAATTAG-TTTGTGGCT-AAA  897

seq1  TTTTAACAAAAAGGATATTGTGCAATGATAGAATGACCATCAAAGCAGTC  950
      ||||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTTAAC-AAAAGGATATTGTGCAATGATAG-ATGACCATCAAAGCAGTC  945

seq1  CCGTGAAGTAGTTTTCAAAATGGTATGTATGCTGTTAACCCACTTTTTAA  1000
       |||||||||||||   ||||||||||||||||| ||||||||||||   
seq2  TCGTGAAGTAGTTT--CAAATGGTATGTATGCTG-TAACCCACTTTT---  989

seq1  ACAAACAAAATGTGTGTTTATGCATAGGAAAGTGGAGGGAATCTATAAGG  1050
       || |  ||||||||||||||||||| |||||||||||  |||||||| |
seq2  -CACAACAAATGTGTGTTTATGCATA-GAAAGTGGAGG--ATCTATAA-G  1034

seq1  TGAACTTGACAGTGTCTCTCCACAATATGAGTCTGTAGGAGATCCTCTTT  1100
      |||   ||| ||    ||||| | |||||||||||||||| ||||     
seq2  TGA--CTGAAAG---GTCTCCCCCATATGAGTCTGTAGGA-ATCC-----  1073

seq1  TTTAGTTTTCATTT  1114
       ||||  |||||||
seq2  CTTAG--TTCATTT  1085