BAC Information

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BAC

Clone NameB6Ng01-117E09
Chromosome5 (Build37)
Map Location 147,774,785 - 147,951,679
singlet/doubletdoublet
Overlap geneMtif3, Lnx2, Rpo1-3
Upstream geneCyp3a25, LOC667098, LOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8, Wasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a
Downstream geneGsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3, Flt1, LOC100039825, Pomp, Slc46a3, C130038G02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117E09.bB6Ng01-117E09.g
ACCDH922054DH922055
length8671,089
definitionDH922054|Mus musculus domesticus DNA, BAC clone: B6Ng01-117E09, 5' end.DH922055|Mus musculus domesticus DNA, BAC clone: B6Ng01-117E09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,950,813 - 147,951,679)(147,774,785 - 147,775,883)
sequence
gaattctacgtcagacagagcttaagcctaggagacctcaagcccaccat
gctagtgacacaccccctccaacaagcctatacctcctaggaagtaccat
tccccatgggccaaacattggcacacttaagtctatgggggccaaaccta
ttcaaacaaccacagcaacatctctaaagtctctagggcaggctgctgtt
cctgatggtgtttttctatctggattatccttgctcagcaggtaaagttt
aaggtttccggactcgctgtagagaggtactcattagcgaccttcgcggc
agttcagaatgtgagtcttcccagggccacagacactgctgaagtctcca
ttgctctgagcagtaattcagatcttgcagctctagttcttgttcttgca
aacgcttgctaatgacggaggcatctgcttccatactctgagcaccatgg
atcgtggcccattctgttttaaaagccacatttacctaacacagcatggc
cattgtgtggggaggagacattatgtatagatttgagctgaaccgtgctt
tcagtcacttgcttggaccgtgtctcgtgagcataaaggtagattattgt
gatgtgttgtcgctgttgttttctgaaacagggtctctctgtgtgtagcc
ctggctgacctgaagttcgatatgtagaccaggctggcttcgaacttata
gagatctgcctgttctctgcctcctgagtgagtactgggattaaagcctt
gtgccaccaagctctgcccaactggtgtgactttaaagacaccgagctcc
aaacacaaacacatcctgaggtactgaagaggcatagggccacatcatct
gggggtgaggggggggg
gaattctctcaccttcaattccggaaggaatttcaaaagtcctgacacgg
cgagcggtgcacgcctttaatcccagcacttcggaggtagaggcaggagg
atttctataggtttgaggtcagactggtctaccgagtgcgtttcaggaca
gccagagataaatagtgagaccctgttgcaaaaacatcaaaaattaaagg
aaaaaaaaatcccaaaacgctcacaaggggtccgcagcagacacgcccac
caggacgccatgccaccaggatgccagttgtcctacgcccccaccttgcc
ccccaaatccgtggaaggagcgtgcgcgcgcacacaaacagcgaaactgg
ctaggctggcgagcaagtgattattggcagctcggcaactggtctcgact
ccgaaggctggtgctgccgccaccccacgtccacggagggctctctgcac
agaatgttcccaggacatgcattcccacctcagccccgtcgccaagccct
cacctcagcgttacctgggccggggtaggcgagcaggaagaactagcagg
tccgtacctggactccgccggagcaccgcgtcggcttccgtagcaggcgg
aacttcctgagtcccttaaagggagggtgcagctgcggcctgcggattcc
actaatggaataaagccctccgacaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaagaatcgtgcagcaggcctgagtgaaactgagagattttgctacta
acctgctgctccaaaggccagtgaacgctaaaatatagagtccctggaac
agtcactgcatcgcttccgccagtaccattaataatgttgaataatgcct
tctacagtgctagacactgcaggcggtgtttaaactattgccaccttgcg
gatctggttagtggaagctctagctgggtagcagggtgcaaccctcgctc
tcaggattgcttctcttttgagaaaagagttggattcaggtcgatactgt
cagactgggagaatcataccgaacacccacatggtggatgattgacgcat
tgggcagagtcagccagaggattgtcagaaacttcagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_147950813_147951679
seq2: B6Ng01-117E09.b_45_911 (reverse)

seq1  CCCCCACCCTCACCCCCAGATGATGTGGCCCTATGCCTCTTCAGTACCTC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCTCACCCCCAGATGATGTGGCCCTATGCCTCTTCAGTACCTC  50

seq1  AGGATGTGTTTGTGTTTGGAGCTCGGTGTCTTTAAAGTCACACCAGTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTGTTTGTGTTTGGAGCTCGGTGTCTTTAAAGTCACACCAGTTGG  100

seq1  GCAGAGCTTGGTGGCACAAGGCTTTAATCCCAGTACTCACTCAGGAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTTGGTGGCACAAGGCTTTAATCCCAGTACTCACTCAGGAGGCA  150

seq1  GAGAACAGGCAGATCTCTATAAGTTCGAAGCCAGCCTGGTCTACATATCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGGCAGATCTCTATAAGTTCGAAGCCAGCCTGGTCTACATATCG  200

seq1  AACTTCAGGTCAGCCAGGGCTACACACAGAGAGACCCTGTTTCAGAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAGGTCAGCCAGGGCTACACACAGAGAGACCCTGTTTCAGAAAAC  250

seq1  AACAGCGACAACACATCACAATAATCTACCTTTATGCTCACGAGACACGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCGACAACACATCACAATAATCTACCTTTATGCTCACGAGACACGG  300

seq1  TCCAAGCAAGTGACTGAAAGCACGGTTCAGCTCAAATCTATACATAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCAAGTGACTGAAAGCACGGTTCAGCTCAAATCTATACATAATGT  350

seq1  CTCCTCCCCACACAATGGCCATGCTGTGTTAGGTAAATGTGGCTTTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCCACACAATGGCCATGCTGTGTTAGGTAAATGTGGCTTTTAAA  400

seq1  ACAGAATGGGCCACGATCCATGGTGCTCAGAGTATGGAAGCAGATGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGGGCCACGATCCATGGTGCTCAGAGTATGGAAGCAGATGCCTC  450

seq1  CGTCATTAGCAAGCGTTTGCAAGAACAAGAACTAGAGCTGCAAGATCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCATTAGCAAGCGTTTGCAAGAACAAGAACTAGAGCTGCAAGATCTGA  500

seq1  ATTACTGCTCAGAGCAATGGAGACTTCAGCAGTGTCTGTGGCCCTGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGCTCAGAGCAATGGAGACTTCAGCAGTGTCTGTGGCCCTGGGAA  550

seq1  GACTCACATTCTGAACTGCCGCGAAGGTCGCTAATGAGTACCTCTCTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACATTCTGAACTGCCGCGAAGGTCGCTAATGAGTACCTCTCTACA  600

seq1  GCGAGTCCGGAAACCTTAAACTTTACCTGCTGAGCAAGGATAATCCAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGTCCGGAAACCTTAAACTTTACCTGCTGAGCAAGGATAATCCAGAT  650

seq1  AGAAAAACACCATCAGGAACAGCAGCCTGCCCTAGAGACTTTAGAGATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACACCATCAGGAACAGCAGCCTGCCCTAGAGACTTTAGAGATGT  700

seq1  TGCTGTGGTTGTTTGAATAGGTTTGGCCCCCATAGACTTAAGTGTGCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGGTTGTTTGAATAGGTTTGGCCCCCATAGACTTAAGTGTGCCAA  750

seq1  TGTTTGGCCCATGGGGAATGGTACTTCCTAGGAGGTATAGGCTTGTTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGCCCATGGGGAATGGTACTTCCTAGGAGGTATAGGCTTGTTGGA  800

seq1  GGGGGTGTGTCACTAGCATGGTGGGCTTGAGGTCTCCTAGGCTTAAGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGTGTCACTAGCATGGTGGGCTTGAGGTCTCCTAGGCTTAAGCTC  850

seq1  TGTCTGACGTAGAATTC  867
      |||||||||||||||||
seq2  TGTCTGACGTAGAATTC  867

seq1: chr5_147774785_147775883
seq2: B6Ng01-117E09.g_68_1156

seq1  GAATTCTCTCACCTTCAATTCCGGAAGGAATTTCAAAAGTCCTGACACGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCACCTTCAATTCCGGAAGGAATTTCAAAAGTCCTGACACGG  50

seq1  CGAGCGGTGCACGCCTTTAATCCCAGCACTTCGGAGGTAGAGGCAGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCGGTGCACGCCTTTAATCCCAGCACTTCGGAGGTAGAGGCAGGAGG  100

seq1  ATTTCTATAGGTTTGAGGTCAGACTGGTCTACCGAGTGCGTTTCAGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATAGGTTTGAGGTCAGACTGGTCTACCGAGTGCGTTTCAGGACA  150

seq1  GCCAGAGATAAATAGTGAGACCCTGTTGCAAAAACATCAAAAATTAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGATAAATAGTGAGACCCTGTTGCAAAAACATCAAAAATTAAAGG  200

seq1  AAAAAAAAATCCCAAAACGCTCACAAGGGGTCCGCAGCAGACACGCCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATCCCAAAACGCTCACAAGGGGTCCGCAGCAGACACGCCCAC  250

seq1  CAGGACGCCATGCCACCAGGATGCCAGTTGTCCTACGCCCCCACCTTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACGCCATGCCACCAGGATGCCAGTTGTCCTACGCCCCCACCTTGCC  300

seq1  CCCCAAATCCGTGGAAGGAGCGTGCGCGCGCACACAAACAGCGAAACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAATCCGTGGAAGGAGCGTGCGCGCGCACACAAACAGCGAAACTGG  350

seq1  CTAGGCTGGCGAGCAAGTGATTATTGGCAGCTCGGCAACTGGTCTCGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTGGCGAGCAAGTGATTATTGGCAGCTCGGCAACTGGTCTCGACT  400

seq1  CCGAAGGCTGGTGCTGCCGCCACCCCACGTCCACGGAGGGCTCTCTGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAGGCTGGTGCTGCCGCCACCCCACGTCCACGGAGGGCTCTCTGCAC  450

seq1  AGAATGTTCCCAGGACATGCATTCCCACCTCAGCCCCGTCGCCAAGCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTCCCAGGACATGCATTCCCACCTCAGCCCCGTCGCCAAGCCCT  500

seq1  CACCTCAGCGTTACCTGGGCCGGGGTAGGCGAGCAGGAAGAACTAGCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAGCGTTACCTGGGCCGGGGTAGGCGAGCAGGAAGAACTAGCAGG  550

seq1  TCCGTACCTGGACTCCGCCGGAGCACCGCGTCGGCTTCCGTAGCAGGCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTACCTGGACTCCGCCGGAGCACCGCGTCGGCTTCCGTAGCAGGCGG  600

seq1  AACTTCCTGAGTCCCTTAAAGGGAGGGTGCAGCTGCGGCCTGCGGATTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCTGAGTCCCTTAAAGGGAGGGTGCAGCTGCGGCCTGCGGATTCC  650

seq1  ACTAATGGAATAAAGCCCTCCGACAAAAAAAAAAAAAAAAAAAAAAAAAA  700
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACTAATGGAATAAAGCCCTCCGAC-AAAAAAAAAAAAAAAAAAAAAAAAA  699

seq1  AAAAAAGAATCGTGCAGCAGGCCTGAGTGAAACTGAGAGA-TTTGCTACT  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAAAAAGAATCGTGCAGCAGGCCTGAGTGAAACTGAGAGATTTTGCTACT  749

seq1  AACCTGCTGCTCCAAAGGCCAAGTGAACGCTAAAATATAGAGTCCCTGGA  799
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AACCTGCTGCTCCAAAGGCC-AGTGAACGCTAAAATATAGAGTCCCTGGA  798

seq1  ACAGTCACTGCATCGCTTCCGCCAGTTACATTAATAATGTTGAATAATGC  849
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  ACAGTCACTGCATCGCTTCCGCCAGTACCATTAATAATGTTGAATAATGC  848

seq1  CTTCTACAGTGCTAGACAACTGCAGGGCGGTG-TTAAACTATTGCCACC-  897
      ||||||||||||||||| |||||| ||||||| |||||||||||||||| 
seq2  CTTCTACAGTGCTAGAC-ACTGCA-GGCGGTGTTTAAACTATTGCCACCT  896

seq1  TGCGGATCTGGTTTAGTGGAAGCTCTAGCTGGGTAGCAGGGTGCAACCCT  947
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGCGGATCTGG-TTAGTGGAAGCTCTAGCTGGGTAGCAGGGTGCAACCCT  945

seq1  CGCTCTCAAGATTGC-TCTCTTCTGAGAAAAAGAGATGGATTCAGGTTCG  996
      |||||||| |||||| |||||| |||| ||||||| |||||||||| |||
seq2  CGCTCTCAGGATTGCTTCTCTTTTGAG-AAAAGAGTTGGATTCAGG-TCG  993

seq1  ATTACTGTCAGAACTGGGAGAAATCATAACAGACCACCCACATGTGGGAT  1046
      | ||||||||| |||||||| |||||| || || ||||||||||  ||||
seq2  A-TACTGTCAG-ACTGGGAG-AATCAT-ACCGAACACCCACATGGTGGAT  1039

seq1  GATTGACCGCATTGGCCAGAGTCAGGCAAGAGGATGGTCAGAAACTTCGA  1096
      |||||| |||||||| |||||||| || ||||||| |||||||||||| |
seq2  GATTGA-CGCATTGGGCAGAGTCA-GCCAGAGGATTGTCAGAAACTTC-A  1086

seq1  GCC  1099
      |||
seq2  GCC  1089