BAC Information

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BAC

Clone NameB6Ng01-117F11
Chromosome5 (Build37)
Map Location 137,372,667 - 137,495,519
singlet/doubletdoublet
Overlap geneLOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992
Upstream geneYwhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1, Mylc2pl, Emid2
Downstream geneVgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117F11.bB6Ng01-117F11.g
ACCDH922106DH922107
length842737
definitionDH922106|Mus musculus domesticus DNA, BAC clone: B6Ng01-117F11, 5' end.DH922107|Mus musculus domesticus DNA, BAC clone: B6Ng01-117F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,494,678 - 137,495,519)(137,372,667 - 137,373,404)
sequence
gaattcagggaatccagcttagaggcaagtctctttacccactgagccag
atcagaagccccattccctctaccccagtttccaaaatgggagacataag
caaagagtttaaggtccctgaacacgagaggtgagtactggtgatctctt
cggcagcacatatactaaaattggaacgatacagagaagagaggtgagta
ctggctacggatgggttaggaggtccaggatgagaccaagctctgggtta
gagctgagtatgtcgcttcagtctctgaccattgtctaccctggagcaga
acactctccaacctgacaccttggaactaactcttgcttctctgttattg
ttagttggtggggttttgttttttgtttttgtttttcagacaggttctct
ctgtgtagccagctgtcctggaactcactttgtaaaccaggctggcctcg
aactcagagatccatctgcctctccctactgagtgatggaattaaaagcg
tgtgtcacctccacctggtggagctaactctcaaagggcatctagacaaa
ctcacaggcagccccggcctgcagagcagagagagagatagctcaggagt
atatgggaccacgatagtgtatactttcttccccaccccactctttatcc
cagcatcctcacatctttatcttcatctcataaacaccaatgatggctcc
aggagagagggatggatggatggagtcactggacatccatatccacccca
ctcctctcccattgactacatacttctgaaatatcagtacctctgaggct
ggtggcttcccagcactgggaaaggaaagggagggaaggaag
atcattgatggtcacagagctgggaagatcattgtgaacctcacaggaag
gttgaacaagtgtggcattataagccttagatttgatgtgaaagaagaaa
gacctagagaaatggcagaacaacctgctcccatcacggcagtttgactt
cattgtgctgacaaccttggctggcatcatggaccatgaagaggcaagac
aaaaacatacaggagggaaaatcctgagattcttttttttttaatgtaaa
gcataaataaaaagcctttgtggactttgggggggaaaaaagatattcaa
aaccacctgtaactccagctcctagggatctaaggtcctcttgtggtttc
acatgaattcacactcacaggaacagacacagacacaagcacacacagat
acataaataaaaataaacacacaaggagaaaagaaatgaaacattgcagt
aatagcgtgatatagtaactgctacaccctgagtaactgctacaccctga
ggcagggagatcatgagttcaaagccagccagggttatttccagtgacca
tgtctcagaagccaaaaacaatcctggagagaccaaatcattctgtaaaa
tgagatacacagaaatacacatagatacaaatgattcaaaatagtttttt
ttaagattcattcattattattcataagtacactgtagctgtcttcagac
acactagaagagggtgtcagatccattacagatggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_137494678_137495519
seq2: B6Ng01-117F11.b_44_885 (reverse)

seq1  CTTCCTTCCCTCCCTTTCCTTTCCCAGTGCTGGGAAGCCACCAGCCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCCTCCCTTTCCTTTCCCAGTGCTGGGAAGCCACCAGCCTCAG  50

seq1  GGGTACTGATATTTCAGAAGTATGTAGTTCAATGGGAGAGGAGTGGGGTG  100
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGGTACTGATATTTCAGAAGTATGTAG-TCAATGGGAGAGGAGTGGGGTG  99

seq1  GATATGGATGTCCAGTGACTCCATCCATCCATCCCTCTCTCCTGGAGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGATGTCCAGTGACTCCATCCATCCATCCCTCTCTCCTGGAGCCA  149

seq1  TCATTGGTGTTTATGAGATGAAGATGAAGATGTGAGGATGCTGGGAT-AA  199
      ||||||||||||||||||||||||| ||||||||||||||||||||| ||
seq2  TCATTGGTGTTTATGAGATGAAGATAAAGATGTGAGGATGCTGGGATAAA  199

seq1  GAGTGGGGTGGGGAAGAAAGTATACACTATCGTGGTCCCATATACTCCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGGTGGGGAAGAAAGTATACACTATCGTGGTCCCATATACTCCTG  249

seq1  AGCTATCTCTCTCTCTGCTCTGCAGGCCGGGGCTGCCTGTGAGTTTGTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCTCTCTCTCTGCTCTGCAGGCCGGGGCTGCCTGTGAGTTTGTCT  299

seq1  AGATGCCCTTTGAGAGTTAGCTCCACCAGGTGGAGGTGACACACGCTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCCTTTGAGAGTTAGCTCCACCAGGTGGAGGTGACACACGCTTTT  349

seq1  AATTCCATCACTCAGTAGGGAGAGGCAGATGGATCTCTGAGTTCGAGGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCATCACTCAGTAGGGAGAGGCAGATGGATCTCTGAGTTCGAGGCC  399

seq1  AGCCTGGTTTACAAAGTGAGTTCCAGGACAGCTGGCTACACAGAGAGAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTTTACAAAGTGAGTTCCAGGACAGCTGGCTACACAGAGAGAAC  449

seq1  CTGTCTGAAAAACAAAAACAAAAAACAAAACCCCACCAACTAACAATAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGAAAAACAAAAACAAAAAACAAAACCCCACCAACTAACAATAAC  499

seq1  AGAGAAGCAAGAGTTAGTTCCAAGGTGTCAGGTTGGAGAGTGTTCTGCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCAAGAGTTAGTTCCAAGGTGTCAGGTTGGAGAGTGTTCTGCTC  549

seq1  CAGGGTAGACAATGGTCAGAGACTGAAGCGACATACTCAGCTCTAACCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTAGACAATGGTCAGAGACTGAAGCGACATACTCAGCTCTAACCCA  599

seq1  GAGCTTGGTCTCATCCTGGACCTCCTAACCCATCCGTAGCCAGTACTCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGGTCTCATCCTGGACCTCCTAACCCATCCGTAGCCAGTACTCAC  649

seq1  CTCTCTTCTCTGTATCGTTCCAATTTTAGTATATGTGCTGCCGAAGAGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCTCTGTATCGTTCCAATTTTAGTATATGTGCTGCCGAAGAGAT  699

seq1  CACCAGTACTCACCTCTCGTGTTCAGGGACCTTAAACTCTTTGCTTATGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTACTCACCTCTCGTGTTCAGGGACCTTAAACTCTTTGCTTATGT  749

seq1  CTCCCATTTTGGAAACTGGGGTAGAGGGAATGGGGCTTCTGATCTGGCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATTTTGGAAACTGGGGTAGAGGGAATGGGGCTTCTGATCTGGCTC  799

seq1  AGTGGGTAAAGAGACTTGCCTCTAAGCTGGATTCCCTGAATTC  842
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTAAAGAGACTTGCCTCTAAGCTGGATTCCCTGAATTC  842

seq1: chr5_137372667_137373404
seq2: B6Ng01-117F11.g_77_813

seq1  ATCATTGATGGTCACAGAGCTGGGAAGATCATTGTGAACCTCACAGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGATGGTCACAGAGCTGGGAAGATCATTGTGAACCTCACAGGAAG  50

seq1  GTTGAACAAGTGTGGCATTATAAGCCTTAGATTTGATGTGAAAGAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACAAGTGTGGCATTATAAGCCTTAGATTTGATGTGAAAGAAGAAA  100

seq1  GACCTAGAGAAATGGCAGAACAACCTGCTCCCATCACGGCAGTTTGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGAGAAATGGCAGAACAACCTGCTCCCATCACGGCAGTTTGACTT  150

seq1  CATTGTGCTGACAACCTTGGCTGGCATCATGGACCATGAAGAGGCAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGCTGACAACCTTGGCTGGCATCATGGACCATGAAGAGGCAAGAC  200

seq1  AAAAACATACAGGAGGGAAAATCCTGAGATTCTTTTTTTTTTAATGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATACAGGAGGGAAAATCCTGAGATTCTTTTTTTTTTAATGTAAA  250

seq1  GCATAAATAAAAAGCCTTTGTGGACTTTGGGGGGGAAAAAAGATATTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAATAAAAAGCCTTTGTGGACTTTGGGGGGGAAAAAAGATATTCAA  300

seq1  AACCACCTGTAACTCCAGCTCCTAGGGATCTAAGGTCCTCTTGTGGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCTGTAACTCCAGCTCCTAGGGATCTAAGGTCCTCTTGTGGTTTC  350

seq1  ACATGAATTCACACTCACAGGAACAGACACAGACACAAGCACACACAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAATTCACACTCACAGGAACAGACACAGACACAAGCACACACAGAT  400

seq1  ACATAAATAAAAATAAACACACAAGGAGAAAAGAAATGAAACATTGCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATAAAAATAAACACACAAGGAGAAAAGAAATGAAACATTGCAGT  450

seq1  AATAGCGTGATATAGTAACTGCTACACCCTGAGTAACTGCTACACCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCGTGATATAGTAACTGCTACACCCTGAGTAACTGCTACACCCTGA  500

seq1  GGCAGGGAGATCATGAGTTCAAAGCCAGCCAGGGTTATTTCCAGTGACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGAGATCATGAGTTCAAAGCCAGCCAGGGTTATTTCCAGTGACCA  550

seq1  TGTCTCAGAAGCCAAAAACAATCCTGGAGAGACCAAATCATTCTGTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGAAGCCAAAAACAATCCTGGAGAGACCAAATCATTCTGTAAAA  600

seq1  TGAGATACACAGAAATACACATAGATACAAATGATTCAAAATAGTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATACACAGAAATACACATAGATACAAATGATTCAAAATAGTTTTTT  650

seq1  TTAAGATTCATTCATTATTATTCATAAGTACACTGTAGCTGTCTTCAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATTCATTCATTATTATTCATAAGTACACTGTAGCTGTCTTCAGAC  700

seq1  ACACTAGAAGAGGGTGTCAGATCCCATTACAGATGGTT  738
      |||||||||||||||||||||| |||||||||||||||
seq2  ACACTAGAAGAGGGTGTCAGAT-CCATTACAGATGGTT  737