BAC Information

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BAC

Clone NameB6Ng01-117H13
Chromosome5 (Build37)10 (Build37)
Map Location 18,084,654 - 18,084,93825,663,354 - 25,664,522
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117H13.bB6Ng01-117H13.g
ACCDH922203DH922204
length1,0121,160
definitionDH922203|Mus musculus domesticus DNA, BAC clone: B6Ng01-117H13, 5' end.DH922204|Mus musculus domesticus DNA, BAC clone: B6Ng01-117H13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,654 - 18,084,938)(25,663,354 - 25,664,522)
sequence
gaattctctgtttagctctgttcctcattttaataaggttatttggttct
ctggaatctaacttaaagagttctttctatatattggatattagccctct
attggatgtaggattggtaaagatcttttcccaagctgttggttgccatt
ttctcctatttacattgtcctttgtcttacagaaactttgcaattttatg
agatcccacttgctgattctttttttttattagatattttctttatttac
atttcaaatgctatcccgaaactgccctataccgctctcccaccctgctc
ccctaccaacccattcccacttcttggccctggcattcccctgtactggg
gcatataaagtttgcaataccaaggggcctctcttcccagtgatggctga
ctaggtcatcttctgctccatatgcagctagagacatgagctctggggta
ctggttaattcatattattgttccacctatagggttgcagaccccttcag
ctccttgggtactttctctagctcctccattggggaccctgtgttctata
ctatagatgactgtgagcatccacttctgtatttgccaggcactggcata
gcctcatacgagatagctatatcaaggtcccttcagcaaaatcttgctgg
catatgcaatagtttctgggtttggtggctgattatgggatggatccccg
aatagggtagtctctagctagtctatcctttcgtcttagctccaaactat
atctctgtaactcctttcatgggtattttgttccctattctaagaagaaa
tgaagtatccacatgttggtcttccttcttcttgattttcttgtgttttg
caattatatcttgggtattctaagtttctgggctaatatccactatcagt
gagtgcatatctaatgacttctttttgtgattggggtacctcactaagat
gatatcctccagatacatccattgcccaaatttcataaattcattgtttt
aatagcagagta
gaattcctggtgtgaccaagctcctgggatcctgggattctgtggtcctg
tgagtgttagagcacctgggaatggagcttcttctgggtgttgtgggact
ggctgtggagttagtggccaaagcttatagcacttctgatcctggaaatg
tcagagtgcctgggagtggatcttcctctgggtgttgtgggacaggctgc
agagttctcacccagggtctgctcaggggaccatcccaaacagtaaggac
ccatgtggaaaatttacaacagtgtcttttcaataatgataatccacact
aacagtatcactgtttcaataacagtttataagcttaatatagaagagaa
gccaggagaaatagtgcaaggtagcaagcattgtgtagtagaggattgtc
aacagcccaacaggaggaaggaatacggttttatgaatgtgcattgggca
tcagaaaaggtgagtaagaattaactcaataaggacagatgctgtgatgc
tctgcctcctagggaaggcagcgagcggcccatgggtgacctgaagggct
tgtaatgagctttatcagaaattggataggcccaaagcacaagcaatagt
gtataagtgacttaacacattgatacagacatatggtagcctaagcacag
accatgggaaggcaggaggccaggctgcctgctcagggagtctctagagc
tgccctcagaagaaagtaccaaagtctttttctctctcctagaggttact
ccttcctgggaatctaaggtggtttctttggtgtcaagaggagatttaga
atgtctgcttttgttttcttttcatttttaatgctggatgggcctctctg
tcctctcagctgcttcctaagtactctaccactgaggcagcaccccagag
agcccctccctgaacttggggtaggaggaagaaaactgagattagaatgc
cttgggttctgagaaggtttctacattcttttagttcctcttaattgtat
agggtggaacatgtctcatcccttggaccccaaaatacaatgtagggcat
ggtttttgtttggtggtttggttggttgttggtttgtttaagcctacacc
attaaccaaggagggctcaaatgacctggacattctggacatatgggtgc
tgaattacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084654_18084938
seq2: B6Ng01-117H13.b_263_549 (reverse)

seq1  AAGAAGCTAAAGGGGTCTGCAACCCTATAGGTGGAACAACAATATGAACT  50
      ||| |||| |||||||||||||||||||||||||||||| |||||||| |
seq2  AAGGAGCTGAAGGGGTCTGCAACCCTATAGGTGGAACAATAATATGAATT  50

seq1  AACCAGTACCCCCCAGAGCTCATGTCTCTAGCTGCATATGTATCAAAAGA  100
      ||||||||  |||||||||||||||||||||||||||||| | || ||||
seq2  AACCAGTA--CCCCAGAGCTCATGTCTCTAGCTGCATATGGAGCAGAAGA  98

seq1  TGGCCTAGTCGGCCATCATTGGGAAGAGAGGCCCCTTGTTCTTGCAAACT  150
      || ||||||| ||||||| ||||||||||||||||||| | |||||||||
seq2  TGACCTAGTCAGCCATCACTGGGAAGAGAGGCCCCTTGGTATTGCAAACT  148

seq1  TTATATGCCTCAGTACAGGGGAACGCCAGAGCCAAGAAGTGGGAGTTGGT  200
      ||||||||| ||||||||||||| ||||| |||||||||||||| | |||
seq2  TTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAATGGGT  198

seq1  GGGCAGGGGAG--TGGGGGGAG---GGTATGGGGGACTTTTGGGGTAGCA  245
       || |||||||   || |||||   ||||| ||| | ||| ||| |||||
seq2  TGGTAGGGGAGCAGGGTGGGAGAGCGGTATAGGGCAGTTTCGGGATAGCA  248

seq1  TTGGAAATGTAAATGAAGAAAATACTTAAATAAAAAAAAA  285
      || ||||||||||| ||||||||| |  ||||||||||||
seq2  TTTGAAATGTAAATAAAGAAAATA-TCTAATAAAAAAAAA  287

seq1: chr10_25663354_25664522
seq2: B6Ng01-117H13.g_68_1227

seq1  GAATTCCTGGTGTGACCAAGCTCCTGGGATCCTGGGATTCTGTGGTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTGTGACCAAGCTCCTGGGATCCTGGGATTCTGTGGTCCTG  50

seq1  TGAGTGTTAGAGCACCTGGGAATGGAGCTTCTTCTGGGTGTTGTGGGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTTAGAGCACCTGGGAATGGAGCTTCTTCTGGGTGTTGTGGGACT  100

seq1  GGCTGTGGAGTTAGTGGCCAAAGCTTATAGCACTTCTGATCCTGGAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGGAGTTAGTGGCCAAAGCTTATAGCACTTCTGATCCTGGAAATG  150

seq1  TCAGAGTGCCTGGGAGTGGATCTTCCTCTGGGTGTTGTGGGACAGGCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTGCCTGGGAGTGGATCTTCCTCTGGGTGTTGTGGGACAGGCTGC  200

seq1  AGAGTTCTCACCCAGGGTCTGCTCAGGGGACCATCCCAAACAGTAAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCTCACCCAGGGTCTGCTCAGGGGACCATCCCAAACAGTAAGGAC  250

seq1  CCATGTGGAAAATTTACAACAGTGTCTTTTCAATAATGATAATCCACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGGAAAATTTACAACAGTGTCTTTTCAATAATGATAATCCACACT  300

seq1  AACAGTATCACTGTTTCAATAACAGTTTATAAGCTTAATATAGAAGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTATCACTGTTTCAATAACAGTTTATAAGCTTAATATAGAAGAGAA  350

seq1  GCCAGGAGAAATAGTGCAAGGTAGCAAGCATTGTGTAGTAGAGGATTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAGAAATAGTGCAAGGTAGCAAGCATTGTGTAGTAGAGGATTGTC  400

seq1  AACAGCCCAACAGGAGGAAGGAATACGGTTTTATGAATGTGCATTGGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCCAACAGGAGGAAGGAATACGGTTTTATGAATGTGCATTGGGCA  450

seq1  TCAGAAAAGGTGAGTAAGAATTAACTCAATAAGGACAGATGCTGTGATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAGGTGAGTAAGAATTAACTCAATAAGGACAGATGCTGTGATGC  500

seq1  TCTGCCTCCTAGGGAAGGCAGCGAGCGGCCCATGGGTGACCTGAAGGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCTAGGGAAGGCAGCGAGCGGCCCATGGGTGACCTGAAGGGCT  550

seq1  TGTAATGAGCTTTATCAGAAATTGGATAGGCCCAAAGCACAAGCAATAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGAGCTTTATCAGAAATTGGATAGGCCCAAAGCACAAGCAATAGT  600

seq1  GTATAAGTGACTTAACACATTGATACAGACATATGGTAGCCTAAGCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGTGACTTAACACATTGATACAGACATATGGTAGCCTAAGCACAG  650

seq1  ACCATGGGAAGGCAGGAGGCCAGGCTGCCTGCTCAGGGAGTCTCTAGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGGAAGGCAGGAGGCCAGGCTGCCTGCTCAGGGAGTCTCTAGAGC  700

seq1  TGCCCTCAGAAGAAAGTACCAAAGTCTTTTTCTCTCTCCTAGAGGTTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCAGAAGAAAGTACCAAAGTCTTTTTCTCTCTCCTAGAGGTTACT  750

seq1  CCTTCCTGGGAATCTAAGGTGGTTTC-TTGGTGTCAAGAGGAGATTTAGA  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCTTCCTGGGAATCTAAGGTGGTTTCTTTGGTGTCAAGAGGAGATTTAGA  800

seq1  ATGTCTGCTTTTG-TTTCTTTTCATTTTTAATGCTGGATGGGCCTCTCTG  848
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGCTTTTGTTTTCTTTTCATTTTTAATGCTGGATGGGCCTCTCTG  850

seq1  TCCTCTCAGCTGCTTCCTAAGTACTCTACCACTGA-GCAGCACCCCAGAG  897
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCCTCTCAGCTGCTTCCTAAGTACTCTACCACTGAGGCAGCACCCCAGAG  900

seq1  AGCCCCTCCCTGAACTT-GGGTAGGAGGAAGAAAACTGAGATTAGAAATG  946
      ||||||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  AGCCCCTCCCTGAACTTGGGGTAGGAGGAAGAAAACTGAGATTAG-AATG  949

seq1  CCTT-GGTTCTGAGAAGGTTTCTACATTCTTTTAGTTCCTCTTAATGTAA  995
      |||| |||||||||||||||||||||||||||||||||||||||||   |
seq2  CCTTGGGTTCTGAGAAGGTTTCTACATTCTTTTAGTTCCTCTTAATTGTA  999

seq1  TAGTGTGGAACATGCCTCACCCCTT-GACCCCAAAATTACAAATGTAGGG  1044
      ||| |||||||||| |||| ||||| |||||||||| ||| |||||||||
seq2  TAGGGTGGAACATGTCTCATCCCTTGGACCCCAAAA-TAC-AATGTAGGG  1047

seq1  CATTGTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTAAGC  1094
      || || |||||||||| | ||||| ||| |||  ||| |||| |||||| 
seq2  CA-TGGTTTTTGTTTGGTGGTTTGGTTGGTTG--TTGGTTTG-TTTAAG-  1092

seq1  CCTAGCAACATGTAGCCAAGGATGGGCTCAGATGACCCTGGACATTTCTG  1144
      |||| || ||| || ||||||| ||||||| |||| |||||||| |||||
seq2  CCTA-CACCAT-TAACCAAGGA-GGGCTCAAATGA-CCTGGACA-TTCTG  1137

seq1  GACAATATGGTGGCTGAATTGACAC  1169
      ||| ||||||  |||||||| ||||
seq2  GAC-ATATGGGTGCTGAATT-ACAC  1160