BAC Information

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BAC

Clone NameB6Ng01-117I03
Chromosome5 (Build37)
Map Location 72,567,469 - 72,708,345
singlet/doubletdoublet
Overlap geneAtp10d, Corin
Upstream geneLOC635092, 4930503B16Rik, Gabra4, Gabrb1, LOC666545, Commd8
Downstream geneNfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127, Fryl, Ociad1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117I03.bB6Ng01-117I03.g
ACCDH922231DH922232
length1,19183
definitionDH922231|Mus musculus domesticus DNA, BAC clone: B6Ng01-117I03, 5' end.DH922232|Mus musculus domesticus DNA, BAC clone: B6Ng01-117I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,567,469 - 72,568,727)(72,708,263 - 72,708,345)
sequence
gaattcacttgaataaaaagctcaggaatccaagtgaattcacagctcat
ttaaaaatacactgaagcactggccaacttaaaaatgagttatagtagcc
aggaagagggccagggtcagtgggtaaaggtgacggccgactggcaatct
ggagtttaatcctcagaaccaatactgtggaagaagagaactgacacctg
caagttgtcctctgatctccacattcctgctaggtgcacttgcgcgcgcg
cgcgcacacacacacactataaattactgaccaagtaaacttctttctga
tatctcatttaatgaatcatgatgaaataaaaacataaatgtgggcaaaa
tagttgaaagtagcaaaaaaaaaaattttcactagataagactaaataaa
ggacaacagcctgttcaagaccacgcgaccgaccgcaaaaggggcaagaa
ttctgaaaaaaaaaaaaaaaatccaggtccaccgaaaggaaagccaagag
agttctgagttggagttaggagaacagaggccgttcatgtttaccaattg
actttacccccaaagaaacgtaggctttcacctgcctccgtgacaaagac
agggcccacagggctgccacctcctttcgtgattaaatttcagagatggc
tgggagacatttctaagctgtaaaactgatgagagaccttttaaaaggtt
tgcatctctgaaaggcttggaaaataaagttgcacgtttggtgaagacaa
gctaccaaaatgaaggtccgggggcctaaaggcaaagaggaagtcaagtc
ggagaaaatgacggaaacttgatcaaaggtcaagtgaacgggtgattatg
gaggtgagtggctcggcagccccgaaaggagtccagtgagtcgccacgat
gatgagctttcagtcgcccgggttagggcttccagttaaccggaaaggaa
gctggtagagacttgagtcacttcagagatagaaaaaaaaaaaaaaaaaa
gtacatttcctgctgtctgcattaagagacatgagagggactctttctcc
acttctaaacgacgcctgggcatgtctcactacctggggacatcacgtaa
tggcatgctctgctagatcctcaggtgctagaatgctgagccacttgaga
gtcgtccttcatttacgaactattctcactcgcggaagaac
ttttgtgcaacaacacatcacattcacctaagggacagggatcatcacct
aagggacagagagagggggaggagggagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_72567469_72568727
seq2: B6Ng01-117I03.b_48_1238

seq1  GAATTCACTTGAATAAAAAGCTCAGGAATCCAAGTGAATTCACAGCTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGAATAAAAAGCTCAGGAATCCAAGTGAATTCACAGCTCAT  50

seq1  TTAAAAATACACTGAAGCACTGGCCAACTTAAAAATGAGTTATAGTAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATACACTGAAGCACTGGCCAACTTAAAAATGAGTTATAGTAGCC  100

seq1  AGGAAGAGGGCCAGGGTCAGTGGGTAAAGGTGACGGCCGACTGGCAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGGGCCAGGGTCAGTGGGTAAAGGTGACGGCCGACTGGCAATCT  150

seq1  GGAGTTTAATCCTCAGAACCAATACTGTGGAAGAAGAGAACTGACACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTAATCCTCAGAACCAATACTGTGGAAGAAGAGAACTGACACCTG  200

seq1  CAAGTTGTCCTCTGATCTCCACATTCCTGCTAGGTGCACTTGCGCGCGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGTCCTCTGATCTCCACATTCCTGCTAGGTGCACTTGCGCGCGCG  250

seq1  CGCGCACACACACACACTATAAATTACTGACCAAGTAAACTTCTTTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCACACACACACACTATAAATTACTGACCAAGTAAACTTCTTTCTGA  300

seq1  TATCTCATTTAATGAATCATGATGAAATAAAAACATAAATGTGGGCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCATTTAATGAATCATGATGAAATAAAAACATAAATGTGGGCAAAA  350

seq1  TAGTTGAAAGTAGCAAAAAAAAAAATTTTCACTAGATAAGACTAAATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGAAAGTAGCAAAAAAAAAAATTTTCACTAGATAAGACTAAATAAA  400

seq1  GGACAACAGCCTGTTCAAGACCACGCGACCGACCGCAAAAGGGGCAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACAGCCTGTTCAAGACCACGCGACCGACCGCAAAAGGGGCAAGAA  450

seq1  TTCTGAAAAAAAAAAAAAAAATCCAGGTCCACCGAAAGGAAAGCCAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAAAAAAAAAAAAAATCCAGGTCCACCGAAAGGAAAGCCAAGAG  500

seq1  AGTTCTGAGTTGGAGTTAGGAGAACAGAGGCCGTTCATGTTTACCAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGAGTTGGAGTTAGGAGAACAGAGGCCGTTCATGTTTACCAATTG  550

seq1  ACTTTACCCCCAAAGAAACGTAGGCTTTCACCTGCCTCCGTGACAAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACCCCCAAAGAAACGTAGGCTTTCACCTGCCTCCGTGACAAAGAC  600

seq1  AGGGCCCACAGGGCTGCCACCTCCTTTCGTGATTAAATTTCAGAGATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCACAGGGCTGCCACCTCCTTTCGTGATTAAATTTCAGAGATGGC  650

seq1  TGGGAGACATTTCTAAGCTGTAAAACTGATGAGAGACCTTTTAAAAGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGACATTTCTAAGCTGTAAAACTGATGAGAGACCTTTTAAAAGGTT  700

seq1  TGCATCTCTGAAAGGCTTGGAAAATAAAGTTGCACGTTTGGTGAAGACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTCTGAAAGGCTTGGAAAATAAAGTTGCACGTTTGGTGAAGACAA  750

seq1  GCTACCAAAATGAAGGTCCGGGGGCCTAAAGGCAAAGAGGAAGTCAAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCAAAATGAAGGTCCGGGGGCCTAAAGGCAAAGAGGAAGTCAAGTC  800

seq1  GGAGAAAATGACGGAAACTTGATCAAAGGTCAAGTGAACGGGTGATTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAATGACGGAAACTTGATCAAAGGTCAAGTGAACGGGTGATTATG  850

seq1  GAGGTGAGTGGCTCGGCAGCCCCGAAAGGAGTCCAGTGAGTCGCCACGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGAGTGGCTCGGCAGCCCCGAAAGGAGTCCAGTGAGTCGCCACGAT  900

seq1  GATGAGCTTTCAGTCGCCC-GGTTAGGGCTTCCAGTTAACCGGAAAAGGA  949
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  GATGAGCTTTCAGTCGCCCGGGTTAGGGCTTCCAGTTAACCGG-AAAGGA  949

seq1  AGCTGGTAGAAGACTTGAGCCACTTCCAGAGATTAGGAAAAAAAAAAAAA  999
      ||||||||| ||||||||| ||||| |||||| |||  ||||||||||||
seq2  AGCTGGTAG-AGACTTGAGTCACTT-CAGAGA-TAG--AAAAAAAAAAAA  994

seq1  AAAAAAGTACCAATTTTCCCTGCCTGTCCTGGCATATAGGAGGACATGAG  1049
      ||||||||||  ||||  |||| |||||   |||| || || ||||||||
seq2  AAAAAAGTAC--ATTT--CCTG-CTGTC--TGCAT-TAAGA-GACATGAG  1035

seq1  AGGGGACTTCCTTTTCTCCACTCCTAAAAACGGACGCCCTGGGGCCATGT  1099
      | ||||||    |||||||||| |||||    |||| ||||||  |||||
seq2  A-GGGACT---CTTTCTCCACTTCTAAA---CGACG-CCTGGG--CATGT  1075

seq1  CTCCACTACCCCTGGGGACATCCACCGTTTACAGTGGCCATGCTCTCTGG  1149
      || |||||  ||||||||||||   |||    | ||| ||||||||    
seq2  CT-CACTA--CCTGGGGACATC--ACGT----AATGG-CATGCTCT----  1111

seq1  CCTAAGGAGTCCTTCTAGGTGCGTAGTATATGGCTGAGAGCCATTCTAAA  1199
       |||  || ||||   |||||| ||| ||   |||  |||||| |  | |
seq2  GCTA--GA-TCCT--CAGGTGC-TAGAAT---GCT--GAGCCACTTGAGA  1150

seq1  GTAAGCTCCGCTTCTCTCATCACATATTATACCGAACTCTTATCTCACTG  1249
      ||        | ||  ||||      |||   |||||| |  ||||||| 
seq2  GT--------CGTCCTTCAT------TTA---CGAACTAT--TCTCACTC  1181

seq1  CGGGAAGAAC  1259
        ||||||||
seq2  GCGGAAGAAC  1191

seq1: chr5_72708263_72708345
seq2: B6Ng01-117I03.g_71_153 (reverse)

seq1  CCTCCCTCCCTCCTCCCCCTCTCTCTGTCCCTTAGGTGATGATCCCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCCCTCCTCCCCCTCTCTCTGTCCCTTAGGTGATGATCCCTGTC  50

seq1  CCTTAGGTGAATGTGATGTGTTGTTGCACAAAA  83
      |||||||||||||||||||||||||||||||||
seq2  CCTTAGGTGAATGTGATGTGTTGTTGCACAAAA  83