BAC Information

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BAC

Clone NameB6Ng01-117O10
Chromosome5 (Build37)
Map Location 126,696,025 - 126,778,571
singlet/doubletdoublet
Overlap genenone
Upstream geneScarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736, LOC100039178, LOC665760
Downstream geneLOC100040327, Tmem132c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117O10.bB6Ng01-117O10.g
ACCDH922519DH922520
length1,195211
definitionDH922519|Mus musculus domesticus DNA, BAC clone: B6Ng01-117O10, 5' end.DH922520|Mus musculus domesticus DNA, BAC clone: B6Ng01-117O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,777,371 - 126,778,571)(126,696,025 - 126,696,235)
sequence
gaattcaataataacagcttgctggcaaatgggggcatttgactggaaga
aattaattcagtttttgataagatgaaaatggccatgaacagtaatccgg
gtgagactcacagctgtcaggagcacaacaaagggtttgatcaccttctt
aacccacggaattatctagacagtgctgacctcaatttttaattgattac
ccagatattaatagaagaaaatatggttttctataagattgtcaatggtt
cgtggctgtcatagaatgatcccaattctgttgttcaggactactgcagt
gtgtacgatagtaaatcctttgcataaaaacaataatgatgtgaaataag
agtctaagttagtttggctgagcccatgaagctgccagtaattcagaaga
ttagtgaatttcctgtgatatttagttatgcatggttatgttagcgaact
tagagatctcagcctgcgtgccaggttctgctacctgtcctcagtaatcc
ttccaagaagtcaaattaatagagaaagatgaaaagggagatgtagttac
actagaaagaaggacaaagacctagggacattgctcaagtcctgttagca
cacagtgagagtgaagtttaaatacagggccaaggatgtgcacatctaag
gagttcagttgtggataagtcccaacttctatggccccatcactgcctgg
cttcagtctcaccttgtaaggtgagctgacacattgctagaactgtaaaa
tctttctgaaagacaagttctcctctagttgttacttttttctcctccca
ccaggacattcctggggaaattcgcattttgtgggctctggtgtttcatt
agtctggtggtcaggttgagagacatgggcatctcttcagaatacacttg
tttctgtcaggcccattacagttgggagagaagaataaaaaaaaattagc
acatacctaatgtctgtgtatagtttgggctgctttcatttaaagtctca
ttgagattccacagctgtttaatagttgcctgtggtaaatccacccaagc
ctgccttccactgttgagccagcccatcctgggcctctgccctgaaattt
tacttgctgcctggcctgaatagaatctactttctttctccttaagggga
aggagcctgtcatttctagatctttctgttgaccatattggtcaa
taatagggcttggaaacatggtgcctctgcagggtggctgtgcctctgtc
ggtgaagaagcaaacaggaggcatgaagatcagctggcaagtcagtggaa
gatagggtgcccctctctctctttctctcatttattttcccttccttcct
tccttccttccttccatacttccttccttccttccttcctccctccctcc
ctccctccctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_126777371_126778571
seq2: B6Ng01-117O10.b_46_1240 (reverse)

seq1  TTGAC--ATATGGTCAACAGAAAAGATTCTAGGAAGTGACAGGGCTCCTT  48
      |||||  ||||||||||||| ||||| |||| ||| ||||| ||||||||
seq2  TTGACCAATATGGTCAACAG-AAAGA-TCTA-GAAATGACA-GGCTCCTT  46

seq1  CACC-TAAGGAGGAAGAAAAGTTAAGA-TCTATTCAGGCCAGGCAGCAAG  96
      | || ||||||| ||| |||||  ||| ||||||||||||||||||||| 
seq2  CCCCTTAAGGAGAAAG-AAAGT--AGATTCTATTCAGGCCAGGCAGCAA-  92

seq1  GTAAAAATTTCCAGGGCAGA-GCCCAGCATGGGCTGGCTCAACAGTGGAA  145
      ||||||  || ||||||||| |||||| ||||||||||||||||||||||
seq2  GTAAAA--TTTCAGGGCAGAGGCCCAGGATGGGCTGGCTCAACAGTGGAA  140

seq1  GGCAGGCTTGGGTGGATTTACCACAGGCAACTATTAAACAGCTGTGGAAT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCTTGGGTGGATTTACCACAGGCAACTATTAAACAGCTGTGGAAT  190

seq1  CTCAATGAGACTTTAAATGAAAGCAGCCCAAACTTATACACAGACATTAG  245
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCAATGAGACTTTAAATGAAAGCAGCCCAAAC-TATACACAGACATTAG  239

seq1  GTATGTGCTAATTTTTTTTTATTCTTCTCTCCCAACTGTAATGGGCCTGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGCTAATTTTTTTTTATTCTTCTCTCCCAACTGTAATGGGCCTGA  289

seq1  CAGAAACAAGTGTATTCTGAAGAGATGCCCATGTCTCTCAACCTGACCAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACAAGTGTATTCTGAAGAGATGCCCATGTCTCTCAACCTGACCAC  339

seq1  CAGACTAATGAAACACCAGAGCCCACAAAATGCGAATTTCCCCAGGAATG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTAATGAAACACCAGAGCCCACAAAATGCGAATTTCCCCAGGAATG  389

seq1  TCCTGGTGGGAGGAGAAAAAAGTAACAACTAGAGGAGAACTTGTCTTTCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTGGGAGGAGAAAAAAGTAACAACTAGAGGAGAACTTGTCTTTCA  439

seq1  GAAAGATTTTACAGTTCTAGCAATGTGTCAGCTCACCTTACAAGGTGAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATTTTACAGTTCTAGCAATGTGTCAGCTCACCTTACAAGGTGAGA  489

seq1  CTGAAGCCAGGCAGTGATGGGGCCATAGAAGTTGGGACTTATCCACAACT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCCAGGCAGTGATGGGGCCATAGAAGTTGGGACTTATCCACAACT  539

seq1  GAACTCCTTAGATGTGCACATCCTTGGCCCTGTATTTAAACTTCACTCTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCTTAGATGTGCACATCCTTGGCCCTGTATTTAAACTTCACTCTC  589

seq1  ACTGTGTGCTAACAGGACTTGAGCAATGTCCCTAGGTCTTTGTCCTTCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTGCTAACAGGACTTGAGCAATGTCCCTAGGTCTTTGTCCTTCTT  639

seq1  TCTAGTGTAACTACATCTCCCTTTTCATCTTTCTCTATTAATTTGACTTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGTAACTACATCTCCCTTTTCATCTTTCTCTATTAATTTGACTTC  689

seq1  TTGGAAGGATTACTGAGGACAGGTAGCAGAACCTGGCACGCAGGCTGAGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGGATTACTGAGGACAGGTAGCAGAACCTGGCACGCAGGCTGAGA  739

seq1  TCTCTAAGTTCGCTAACATAACCATGCATAACTAAATATCACAGGAAATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAGTTCGCTAACATAACCATGCATAACTAAATATCACAGGAAATT  789

seq1  CACTAATCTTCTGAATTACTGGCAGCTTCATGGGCTCAGCCAAACTAACT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATCTTCTGAATTACTGGCAGCTTCATGGGCTCAGCCAAACTAACT  839

seq1  TAGACTCTTATTTCACATCATTATTGTTTTTATGCAAAGGATTTACTATC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCTTATTTCACATCATTATTGTTTTTATGCAAAGGATTTACTATC  889

seq1  GTACACACTGCAGTAGTCCTGAACAACAGAATTGGGATCATTCTATGACA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACACTGCAGTAGTCCTGAACAACAGAATTGGGATCATTCTATGACA  939

seq1  GCCACGAACCATTGACAATCTTATAGAAAACCATATTTTCTTCTATTAAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGAACCATTGACAATCTTATAGAAAACCATATTTTCTTCTATTAAT  989

seq1  ATCTGGGTAATCAATTAAAAATTGAGGTCAGCACTGTCTAGATAATTCCG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGTAATCAATTAAAAATTGAGGTCAGCACTGTCTAGATAATTCCG  1039

seq1  TGGGTTAAGAAGGTGATCAAACCCTTTGTTGTGCTCCTGACAGCTGTGAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTAAGAAGGTGATCAAACCCTTTGTTGTGCTCCTGACAGCTGTGAG  1089

seq1  TCTCACCCGGATTACTGTTCATGGCCATTTTCATCTTATCAAAAACTGAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCCGGATTACTGTTCATGGCCATTTTCATCTTATCAAAAACTGAA  1139

seq1  TTAATTTCTTCCAGTCAAATGCCCCCATTTGCCAGCAAGCTGTTATTATT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCTTCCAGTCAAATGCCCCCATTTGCCAGCAAGCTGTTATTATT  1189

seq1  GAATTC  1201
      ||||||
seq2  GAATTC  1195

seq1: chr5_126696025_126696235
seq2: B6Ng01-117O10.g_75_285

seq1  TAATAGGGCTTGGAAACATGGTGCCTCTGCAGGGTGGCTGTGCCTCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGGCTTGGAAACATGGTGCCTCTGCAGGGTGGCTGTGCCTCTGTC  50

seq1  GGTGAAGAAGCAAACAGGAGGCATGAAGATCAGCTGGCAAGTCAGTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGAAGCAAACAGGAGGCATGAAGATCAGCTGGCAAGTCAGTGGAA  100

seq1  GATAGGGTGCCCCTCTCTCTCTTTCTCTCATTTATTTTCCCTTCCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGTGCCCCTCTCTCTCTTTCTCTCATTTATTTTCCCTTCCTTCCT  150

seq1  TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCCCTCCCTCC  200
      ||||||||||||||| | ||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTCCTTCCATACTTCCTTCCTTCCTTCCTTCCTCCCTCCCTCC  200

seq1  CTCCCTCCCTC  211
      |||||||||||
seq2  CTCCCTCCCTC  211