BAC Information

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BAC

Clone NameB6Ng01-117P18
Chromosome5 (Build37)
Map Location 31,299,240 - 31,426,886
singlet/doubletdoublet
Overlap geneSlc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54
Upstream geneLOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23
Downstream geneUcn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117P18.bB6Ng01-117P18.g
ACCDH922583DH922584
length1,110780
definitionDH922583|Mus musculus domesticus DNA, BAC clone: B6Ng01-117P18, 5' end.DH922584|Mus musculus domesticus DNA, BAC clone: B6Ng01-117P18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,425,784 - 31,426,886)(31,299,240 - 31,300,018)
sequence
gaattctaggcttcgttcaaggctttggtgcagcgaccatgatcggaacc
tttctctcgagggctgcgtgatgccttctggtccctctgtggtctgtcta
gagaagctatataaatggagtcagtctggcaaatgtgcacatatctcaca
gtggtagccctcttcccggcttcccagagaacgctaatatgaaagaggcc
ttggatgccaggcacaatgttggagacctccactcccaacctgatggcct
tgtggcttttgtgagcctaggtcacattggaaaaacagaatagacagaag
acatctggtgaaaggtaggaaatccagttcttacttaaagctaaaatggg
aaaggcatatatagacctgggctgagaaacaagggcccactgctgacact
gggactaagtgggagaggaaagggccaactgaagaccccggtagtagaat
agaaaggctttaaaagtgatcacccagcctggtggtggtggccacgcctt
taatcccagcacttgggaggcagaggcaggcgaatttctgagttcgaggt
cagcctggtctacaaagtgagttccaagacagccagagaaaccctgtgtc
aaaaaaaacaaaaacaaaaacaaaataaaaaaagtgatcacccagagcaa
gccatgatggaagacatctggtgtcaacctctgtccttcacatgggatca
aaacaaacaaatttaaaaggccagaaaatgaagcagactgctgggccttt
cagtggaggcctgtgattcccgatgaccagctgaagcaagggcagagcca
gctgagctcttctttctttcccagactcctccctctccctctctcccctc
ccccctctccctccctcttcctctccctctgccacacatgtgcatgcata
cacacagtctttatagttcagactggccttgagctcactggtgtagtgct
aaggatgacttgtgaaattttctgatttccttgcctctacctatcaagtt
ctgggagcacagcgtttaccattatgggaccactcctgcctcattttctt
ccaggccttgggatcaaaattcaggtttcctgcacaccagtcagctctca
tacccacagg
gaattcagcatagcgacacactattggcttattcaaacatcagcagaaaa
attacatgtacgtgcagggtgtcagagttctgtgagttgttgactcagtt
cagatagccctgctatgtcttcacagtcccctttatcttatggtcaagat
gttcccaggaatgttttaacaacagggcatacccaggtttgtttttcttt
attctcagccccaggcagcctctaggctcacaaacaaccagcaatttctg
tgtactttatatgacttacaggtcttgaaatttcatctttctttcaatat
aagccatgttttttggctggccagttctttctgaacacttcagatgtttt
actctgcagatcaggctggccttgaactcatgaagagccacctgcttctg
cctccaggtgctgggattaaaggcatgcactattagcacacttggctatg
gatacttccactgcccagctgcacccagaatccttctctgaaacagaagt
agaacccagaggaaggaggctccacgaagggcttccacatttttggtata
gatgccacagggcttaagtgaggacatcctgcacagtcacagggactggc
accattaacagttgcatccagctgtgtagtgatggcgcacgcctttaatc
ccagcactcgggaggcagaggcaggtggatttctgagtttgaggccagac
tggtctgcagagtgagttccatgacgtgcatggctacacaggggaaagcc
tgtctcgaaaaatttgaaagaagaatggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31425784_31426886
seq2: B6Ng01-117P18.b_45_1154 (reverse)

seq1  CCTGTGGGTATGAG-CCTGCCTGGTGTGCAGAAACCCTG-ATTTTGATCC  48
      ||||||||||||||  ||| ||||||||||| || |||| ||||||||||
seq2  CCTGTGGGTATGAGAGCTGACTGGTGTGCAGGAAACCTGAATTTTGATCC  50

seq1  CCA-GCCTTGCAG-AAATGAGGCAGG-GTGGT-CCATAATTGTAAACGCT  94
      | | |||| | || |||||||||||| ||||| ||||||| |||||||||
seq2  CAAGGCCTGGAAGAAAATGAGGCAGGAGTGGTCCCATAATGGTAAACGCT  100

seq1  GTGCTCCCAGAACTTGATAGGTAGAGGCAAGAAAATCAG-AAATTTCACA  143
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  GTGCTCCCAGAACTTGATAGGTAGAGGCAAGGAAATCAGAAAATTTCACA  150

seq1  AGTCATCCTTAGCACTACA-CAGTGAGCTCAAGGCCAGTCTGAACTATTA  192
      ||||||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  AGTCATCCTTAGCACTACACCAGTGAGCTCAAGGCCAGTCTGAACTA-TA  199

seq1  AAGACTGTGTGTATGCATGCACATGTGTGGCAGAGGGAGAGGAAGAGGGA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGTGTGTATGCATGCACATGTGTGGCAGAGGGAGAGGAAGAGGGA  249

seq1  GGGAGAGGGGGGAGGGGAGAGAGGGAGAGGGAGGAGTCTGGGAAAGAAAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGGGGGGAGGGGAGAGAGGGAGAGGGAGGAGTCTGGGAAAGAAAG  299

seq1  AAGAGCTCAGCTGGCTCTGCCCTTGCTTCAGCTGGTCATCGGGAATCACA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTCAGCTGGCTCTGCCCTTGCTTCAGCTGGTCATCGGGAATCACA  349

seq1  GGCCTCCACTGAAAGGCCCAGCAGTCTGCTTCATTTTCTGGCCTTTTAAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCACTGAAAGGCCCAGCAGTCTGCTTCATTTTCTGGCCTTTTAAA  399

seq1  TTTGTTTGTTTTGATCCCATGTGAAGGACAGAGGTTGACACCAGATGTCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTTGATCCCATGTGAAGGACAGAGGTTGACACCAGATGTCT  449

seq1  TCCATCATGGCTTGCTCTGGGTGATCACTTTTTTTATTTTGTTTTTGTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCATGGCTTGCTCTGGGTGATCACTTTTTTTATTTTGTTTTTGTTT  499

seq1  TTGTTTTTTTTGACACAGGGTTTCTCTGGCTGTCTTGGAACTCACTTTGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTTTGACACAGGGTTTCTCTGGCTGTCTTGGAACTCACTTTGT  549

seq1  AGACCAGGCTGACCTCGAACTCAGAAATTCGCCTGCCTCTGCCTCCCAAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGACCTCGAACTCAGAAATTCGCCTGCCTCTGCCTCCCAAG  599

seq1  TGCTGGGATTAAAGGCGTGGCCACCACCACCAGGCTGGGTGATCACTTTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTAAAGGCGTGGCCACCACCACCAGGCTGGGTGATCACTTTT  649

seq1  AAAGCCTTTCTATTCTACTACCGGGGTCTTCAGTTGGCCCTTTCCTCTCC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTTTCTATTCTACTACCGGGGTCTTCAGTTGGCCCTTTCCTCTCC  699

seq1  CACTTAGTCCCAGTGTCAGCAGTGGGCCCTTGTTTCTCAGCCCAGGTCTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGTCCCAGTGTCAGCAGTGGGCCCTTGTTTCTCAGCCCAGGTCTA  749

seq1  TATATGCCTTTCCCATTTTAGCTTTAAGTAAGAACTGGATTTCCTACCTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCCTTTCCCATTTTAGCTTTAAGTAAGAACTGGATTTCCTACCTT  799

seq1  TCACCAGATGTCTTCTGTCTATTCTGTTTTTCCAATGTGACCTAGGCTCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGATGTCTTCTGTCTATTCTGTTTTTCCAATGTGACCTAGGCTCA  849

seq1  CAAAAGCCACAAGGCCATCAGGTTGGGAGTGGAGGTCTCCAACATTGTGC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCCACAAGGCCATCAGGTTGGGAGTGGAGGTCTCCAACATTGTGC  899

seq1  CTGGCATCCAAGGCCTCTTTCATATTAGCGTTCTCTGGGAAGCCGGGAAG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATCCAAGGCCTCTTTCATATTAGCGTTCTCTGGGAAGCCGGGAAG  949

seq1  AGGGCTACCACTGTGAGATATGTGCACATTTGCCAGACTGACTCCATTTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTACCACTGTGAGATATGTGCACATTTGCCAGACTGACTCCATTTA  999

seq1  TATAGCTTCTCTAGACAGACCACAGAGGGACCAGAAGGCATCACGCAGCC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTTCTCTAGACAGACCACAGAGGGACCAGAAGGCATCACGCAGCC  1049

seq1  CTCGAGAGAAAGGTTCCGATCATGGTCGCTGCACCAAAGCCTTGAACGAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGAGAAAGGTTCCGATCATGGTCGCTGCACCAAAGCCTTGAACGAA  1099

seq1  GCCTAGAATTC  1103
      |||||||||||
seq2  GCCTAGAATTC  1110

seq1: chr5_31299240_31300018
seq2: B6Ng01-117P18.g_67_846

seq1  GAATTCAGCATAGCGACACACTATTGGCTTATTCAAACATCAGCAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATAGCGACACACTATTGGCTTATTCAAACATCAGCAGAAAA  50

seq1  ATTACATGTACGTGCAGGGTGTCAGAGTTCTGTGAGTTGTTGACTCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGTACGTGCAGGGTGTCAGAGTTCTGTGAGTTGTTGACTCAGTT  100

seq1  CAGATAGCCCTGCTATGTCTTCACAGTCCCCTTTATCTTATGGTCAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGCCCTGCTATGTCTTCACAGTCCCCTTTATCTTATGGTCAAGAT  150

seq1  GTTCCCAGGAATGTTTTAACAACAGGGCATACCCAGGTTTGTTTTTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCAGGAATGTTTTAACAACAGGGCATACCCAGGTTTGTTTTTCTTT  200

seq1  ATTCTCAGCCCCAGGCAGCCTCTAGGCTCACAAACAACCAGCAATTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAGCCCCAGGCAGCCTCTAGGCTCACAAACAACCAGCAATTTCTG  250

seq1  TGTACTTTATATGACTTACAGGTCTTGAAATTTCATCTTTCTTTCAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTTATATGACTTACAGGTCTTGAAATTTCATCTTTCTTTCAATAT  300

seq1  AAGCCATGTTTTTTGGCTGGCCAGTTCTTTCTGAACACTTCAGATGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGTTTTTTGGCTGGCCAGTTCTTTCTGAACACTTCAGATGTTTT  350

seq1  ACTCTGCAGATCAGGCTGGCCTTGAACTCATGAAGAGCCACCTGCTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCAGATCAGGCTGGCCTTGAACTCATGAAGAGCCACCTGCTTCTG  400

seq1  CCTCCAGGTGCTGGGATTAAAGGCATGCACTATTAGCACACTTGGCTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGGTGCTGGGATTAAAGGCATGCACTATTAGCACACTTGGCTATG  450

seq1  GATACTTCCACTGCCCAGCTGCACCCAGAATCCTTCTCTGAAACAGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTCCACTGCCCAGCTGCACCCAGAATCCTTCTCTGAAACAGAAGT  500

seq1  AGAACCCAGAGGAAGGAGGCTCCACGAAGGGCTTCCACATTTTTGGTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCAGAGGAAGGAGGCTCCACGAAGGGCTTCCACATTTTTGGTATA  550

seq1  GATGCCACAGGGCTTAAGTGAGGACATCCTGCACAGTCACAGGGACTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCACAGGGCTTAAGTGAGGACATCCTGCACAGTCACAGGGACTGGC  600

seq1  ACCATTAACAGTTGCATCCAGCTGTGTAGTGATGGCGCACGCCTTTAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAACAGTTGCATCCAGCTGTGTAGTGATGGCGCACGCCTTTAATC  650

seq1  CCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGAC  700

seq1  TGGTCTACACAGTGAGTTCCAGGACAGCCAGGGCTACACA-GAGAAACCC  749
      |||||| || ||||||||||| |||   || ||||||||| | |||| ||
seq2  TGGTCTGCAGAGTGAGTTCCATGACGTGCATGGCTACACAGGGGAAAGCC  750

seq1  TGTCTCGAAAAACCAGGAAAGAAGAA-GGAG  779
      ||||||||||||    |||||||||| ||||
seq2  TGTCTCGAAAAA-TTTGAAAGAAGAATGGAG  780