BAC Information

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BAC

Clone NameB6Ng01-118A15
Chromosome5 (Build37)
Map Location 120,829,837 - 120,997,486
singlet/doubletdoublet
Overlap geneLhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1
Upstream geneLOC100039529, LOC100039542, Tbx3, EG433945, Tbx5, Rbm19, LOC100039609
Downstream geneIqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118A15.bB6Ng01-118A15.g
ACCDH922624DH922625
length1,1871,099
definitionDH922624|Mus musculus domesticus DNA, BAC clone: B6Ng01-118A15, 5' end.DH922625|Mus musculus domesticus DNA, BAC clone: B6Ng01-118A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,829,837 - 120,831,036)(120,996,364 - 120,997,486)
sequence
gaattctatataaattatcttttgctgcggtggggtgggggcaagatgag
tgccccagaacacatcataccaccacattttttcaaataatttgtttatt
tttattgtagctttggtgggggatttttttttttttttttgcctgcgtat
gtgtctgtgtgagacacagatccccttgaactacagttacagacatgtgt
gagctgcaaacgtggctgctgagaattgaacccaagtcctcttgaagagc
agcccatgcccttaaccactaagtcatctctcctacctctgatctctaca
ttaatatggctttgaacatgagagacaattgtctccaggcccctcatgaa
gtcaccattgatgtagtagaagcttggcaagcccagatcttctggcacgg
gcttgctggctggaggtcctggcttcctagggttcttaagctttgtcagt
cccaggaacccacttgacaaaatcacactattctactggtcacagaggga
gccccagccaccacgggggtagcaactactccggccaccccagccacaag
cagatgacagagcccctccctggtctcagctctgccctctgaaacatagg
ggaaggcgctattgcagacttcataggtataaatagtcctatcacagatg
acatggaatgtctaggaggggtgcagttcaacccatagaactaggcacac
ccccactggggacacagcctgtaaatgcacttacctcacaagcataagga
cccccagagaccatgcaaaagctggatatggagtgtgggtgtctgtaacc
ccagccctcctgtgagaggcaggaggcaggtgcaggagaattttgggatc
tcgcaagtcagcagaaacagagagaccttgcctcaaacaaagtaggaaga
agaccaacatccaagttcatacattcgaatgcacacacatgcatgcactg
cacacatttacacacttggagctaggcaagctcacttctacttcagacct
ttgaccagctggtgttccttctcctcaacctgctcagttctcgaatcaac
ggctcccttttcacctctatgctctgtcccttgtcatctcaagaagctgt
ctgtccagcccacccctctcacaaagctaacctttaccttctaactcact
gagaacacgctccttagggtggaggacttggcttgct
gaattccaaggccttccagtatttcatgtgtaagtgtgacccatcgcagc
tctgggcccctgtcctcctgagcccttcattcttgaaggtagagagacaa
acaatccagaaaacgccaagcactggattctgtccccagtacttctcaaa
aaaaaaaaaaaaaaaaaaaaaaaaagcaaaattctgagatcgaggcacgc
ccagatcaccaaacttattatgtgcagaagtgatcacgtgtggttgcttc
ctggccccctgctcccttcagtccctcacttcagttctgggtctctgttg
cagaccccagtcctctgggaccacagtgttgatagggtccctcctgttta
aggacgcttcctcagcagatatgagtctgtcactatgcttagttaaggaa
gtgggtctgttttcgctctgcctgtccccctacatacctaagtcctttta
atttggaacttcagtgcagagtcctatggtgatgtggtactcatagcaac
atgtaattctcaacatgtaagccagttggggagcggggaacctaggagag
tgtggtagctcatgactgtagtcccagcactcgggaggctgagtgattgt
cacaagttcgaggccagcctggcccaacaccaagctcttatctgaaggaa
aaaaaaattcaagggctggaaatagcacttggtggtagagtgttcactgg
ccatgcaggaagtccctggttcccccagcatctcgcggagttagcagagc
aactgttcaagtccccagcacatctcacttacttgacagccagaaggggc
tgggtggggcagtgccctcaggaagctctctgacttcttctgagaagaaa
aaatgatcagtggccacagtctgagggatagagggctcactgcctggcct
gactgtcccggggcttctgcagacaccgcccgggttttgtttgttatcac
tatgacttagtgctatggtgaaggtgatcattttatctgaggtctgatga
agtgtgagcagaacccctagaaaccaatcttccctgagatttcttgagta
gcttgctgtctggactagctctgtaaacagctggctttgaactcaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_120829837_120831036
seq2: B6Ng01-118A15.b_47_1233

seq1  GAATTCTATATAAATTATCTTTTGCTGCGGTGGGGTGGGGGCAAGATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATAAATTATCTTTTGCTGCGGTGGGGTGGGGGCAAGATGAG  50

seq1  TGCCCCAGAACACATCATACCACCACATTTTTTCAAATAATTTGTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAGAACACATCATACCACCACATTTTTTCAAATAATTTGTTTATT  100

seq1  TTTATTGTAGCTTTGGTGGGGGATTTTTTTTTTTTTTTTTGCCTGCGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTAGCTTTGGTGGGGGATTTTTTTTTTTTTTTTTGCCTGCGTAT  150

seq1  GTGTCTGTGTGAGACACAGATCCCCTTGAACTACAGTTACAGACATGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTGTGAGACACAGATCCCCTTGAACTACAGTTACAGACATGTGT  200

seq1  GAGCTGCAAACGTGGCTGCTGAGAATTGAACCCAAGTCCTCTTGAAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCAAACGTGGCTGCTGAGAATTGAACCCAAGTCCTCTTGAAGAGC  250

seq1  AGCCCATGCCCTTAACCACTAAGTCATCTCTCCTACCTCTGATCTCTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATGCCCTTAACCACTAAGTCATCTCTCCTACCTCTGATCTCTACA  300

seq1  TTAATATGGCTTTGAACATGAGAGACAATTGTCTCCAGGCCCCTCATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATGGCTTTGAACATGAGAGACAATTGTCTCCAGGCCCCTCATGAA  350

seq1  GTCACCATTGATGTAGTAGAAGCTTGGCAAGCCCAGATCTTCTGGCACGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCATTGATGTAGTAGAAGCTTGGCAAGCCCAGATCTTCTGGCACGG  400

seq1  GCTTGCTGGCTGGAGGTCCTGGCTTCCTAGGGTTCTTAAGCTTTGTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTGGCTGGAGGTCCTGGCTTCCTAGGGTTCTTAAGCTTTGTCAGT  450

seq1  CCCAGGAACCCACTTGACAAAATCACACTATTCTACTGGTCACAGAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAACCCACTTGACAAAATCACACTATTCTACTGGTCACAGAGGGA  500

seq1  GCCCCAGCCACCACGGGGGTAGCAACTACTCCGGCCACCCCAGCCACAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGCCACCACGGGGGTAGCAACTACTCCGGCCACCCCAGCCACAAG  550

seq1  CAGATGACAGAGCCCCTCCCTGGTCTCAGCTCTGCCCTCTGAAACATAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGACAGAGCCCCTCCCTGGTCTCAGCTCTGCCCTCTGAAACATAGG  600

seq1  GGAAGGCGCTATTGCAGACTTCATAGGTATAAATAGTCCTATCACAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCGCTATTGCAGACTTCATAGGTATAAATAGTCCTATCACAGATG  650

seq1  ACATGGAATGTCTAGGAGGGGTGCAGTTCAACCCATAGAACTAGGCACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAATGTCTAGGAGGGGTGCAGTTCAACCCATAGAACTAGGCACAC  700

seq1  CCCCACTGGGGACACAGCCTGTAAATGCACTTACCTCACAAGCATAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTGGGGACACAGCCTGTAAATGCACTTACCTCACAAGCATAAGGA  750

seq1  CCCCCAGAGACCATGCAAAAGCTGGATATGGAGTGTGGGTGTCTGTAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGAGACCATGCAAAAGCTGGATATGGAGTGTGGGTGTCTGTAACC  800

seq1  CCAGCCCTCCTGTGAGAGGCAGGAGGCAGGTGCAGGAGAATTCTTGGGAT  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCAGCCCTCCTGTGAGAGGCAGGAGGCAGGTGCAGGAGAATT-TTGGGAT  849

seq1  CTCGCAGGTCAGCAGGAAACAGAGAGACCTTGCCTCAAACAAAGTAGGAA  900
      |||||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCGCAAGTCAGCA-GAAACAGAGAGACCTTGCCTCAAACAAAGTAGGAA  898

seq1  GAAGACCAACATCCAAGGTTCATACACTCGAATGCACACACATGCATGCA  950
      |||||||||||||||| ||||||||| |||||||||||||||||||||||
seq2  GAAGACCAACATCCAA-GTTCATACATTCGAATGCACACACATGCATGCA  947

seq1  CTGCACACATGTACACACTTGGAGCTAGCCAGGCTCACTTCTACCTCAGG  1000
      |||||||||| ||||||||||||||||| || |||||||||||| ||| |
seq2  CTGCACACATTTACACACTTGGAGCTAGGCAAGCTCACTTCTACTTCA-G  996

seq1  ACCTTTGAACAAGCT-GTGT--CCTCTCCTCCAACCCTGCCTCAGTTCTT  1047
      ||||||| || |||| ||||  | |||||||  | |||| |||||||| |
seq2  ACCTTTG-ACCAGCTGGTGTTCCTTCTCCTC--AACCTG-CTCAGTTC-T  1041

seq1  CGGATCAACGGCTCCC-TTTCACACTCTATGCTCTGTCCCCTGTCATCTC  1096
      || ||||||||||||| |||||| |||||||||||||||| |||||||||
seq2  CGAATCAACGGCTCCCTTTTCAC-CTCTATGCTCTGTCCCTTGTCATCTC  1090

seq1  ACAGAAGCTG-CTGTCCCAAGCCCACCCCTCTCCACAAAGCTACCTCTTA  1145
      | |||||||| ||||||  ||||||||||||| |||||||||| | ||| 
seq2  A-AGAAGCTGTCTGTCC--AGCCCACCCCTCT-CACAAAGCTAAC-CTTT  1135

seq1  ACTTTCTAACTCACTGAGAACA-GCTCCCTA-GGTTGAGGACTTGGTCTG  1193
      || ||||||||||||||||||| ||||| || ||| ||||||||||    
seq2  ACCTTCTAACTCACTGAGAACACGCTCCTTAGGGTGGAGGACTTGG----  1181

seq1  CCTTGCT  1200
       ||||||
seq2  -CTTGCT  1187

seq1: chr5_120996364_120997486
seq2: B6Ng01-118A15.g_71_1169 (reverse)

seq1  TTTTGTGAGTTCAAGGCCAGCCTGGTCTACAGAGCTAGCTCCAGGACAGC  50
       ||| ||||||||| ||||||   || ||||||||||| |||| ||||||
seq2  -TTTTTGAGTTCAAAGCCAGC--TGTTTACAGAGCTAG-TCCA-GACAGC  45

seq1  CAAGGCTACTCAAAGAAAATCTACAGGGGAGGTGTGTTTCTAGGGGTTTC  100
        | |||||||||   |||||| ||||| || |  ||||||||||| |||
seq2  --AAGCTACTCAA--GAAATCT-CAGGGAAGATTGGTTTCTAGGGG-TTC  89

seq1  TGCCTCCACACTTTCAATCAGACCTCAGAATAAAATGATCACCTTCACCA  150
      |||   |||||||   |||||||||||| |||||||||||||||||||||
seq2  TGC--TCACACTT--CATCAGACCTCAG-ATAAAATGATCACCTTCACCA  134

seq1  ATAAGCACTAAGTCAATAGTGAATAAACAAACAAAACCCGGGCGGTGTCT  200
         ||||||||||| |||||||   |||||||||||||||||||||||||
seq2  --TAGCACTAAGTC-ATAGTGA--TAACAAACAAAACCCGGGCGGTGTCT  179

seq1  GCAGAAAGCCCCGGGGACAGTCAGGGCCAGGCAGTGAGCCCTCTATCCCT  250
      |||| ||||||| |||||||||| ||||||||||||||||||||||||||
seq2  GCAG-AAGCCCC-GGGACAGTCA-GGCCAGGCAGTGAGCCCTCTATCCCT  226

seq1  CAGACTGTGGCCACTGATCATTATTTCTTCTCAGAAGAAGTCAGAGAGCT  300
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAGACTGTGGCCACTGATCATTTTTTCTTCTCAGAAGAAGTCAGAGAGCT  276

seq1  TCCTGAGGGCACTGCCCCACCCAGCCCCTTCTGGCTGTCAAGTAAGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGGGCACTGCCCCACCCAGCCCCTTCTGGCTGTCAAGTAAGTGAG  326

seq1  ATGTGCTGGGGACTTGAACAGTTGCTCTGCTAACTCCGCGAGATGCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTGGGGACTTGAACAGTTGCTCTGCTAACTCCGCGAGATGCTGGG  376

seq1  GGAACCAGGGACTTCCTGCATGGCCAGTGAACACTCTACCACCAAGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCAGGGACTTCCTGCATGGCCAGTGAACACTCTACCACCAAGTGCT  426

seq1  ATTTCCAGCCCTTGAATTTTTTTTTCCTTCAGATAAGAGCTTGGTGTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGCCCTTGAATTTTTTTTTCCTTCAGATAAGAGCTTGGTGTTGG  476

seq1  GCCAGGCTGGCCTCGAACTTGTGACAATCACTCAGCCTCCCGAGTGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCTGGCCTCGAACTTGTGACAATCACTCAGCCTCCCGAGTGCTGG  526

seq1  GACTACAGTCATGAGCTACCACACTCTCCTAGGTTCCCCGCTCCCCAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAGTCATGAGCTACCACACTCTCCTAGGTTCCCCGCTCCCCAACT  576

seq1  GGCTTACATGTTGAGAATTACATGTTGCTATGAGTACCACATCACCATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTACATGTTGAGAATTACATGTTGCTATGAGTACCACATCACCATAG  626

seq1  GACTCTGCACTGAAGTTCCAAATTAAAAGGACTTAGGTATGTAGGGGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGCACTGAAGTTCCAAATTAAAAGGACTTAGGTATGTAGGGGGAC  676

seq1  AGGCAGAGCGAAAACAGACCCACTTCCTTAACTAAGCATAGTGACAGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGCGAAAACAGACCCACTTCCTTAACTAAGCATAGTGACAGACT  726

seq1  CATATCTGCTGAGGAAGCGTCCTTAAACAGGAGGGACCCTATCAACACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTGCTGAGGAAGCGTCCTTAAACAGGAGGGACCCTATCAACACTG  776

seq1  TGGTCCCAGAGGACTGGGGTCTGCAACAGAGACCCAGAACTGAAGTGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCAGAGGACTGGGGTCTGCAACAGAGACCCAGAACTGAAGTGAGG  826

seq1  GACTGAAGGGAGCAGGGGGCCAGGAAGCAACCACACGTGATCACTTCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAGGGAGCAGGGGGCCAGGAAGCAACCACACGTGATCACTTCTGC  876

seq1  ACATAATAAGTTTGGTGATCTGGGCGTGCCTCGATCTCAGAATTTTGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATAAGTTTGGTGATCTGGGCGTGCCTCGATCTCAGAATTTTGCTT  926

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTGAGAAGTACTGGGGACAGAATCCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTTTTTGAGAAGTACTGGGGACAGAATCCA  976

seq1  GTGCTTGGCGTTTTCTGGATTGTTTGTCTCTCTACCTTCAAGAATGAAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGGCGTTTTCTGGATTGTTTGTCTCTCTACCTTCAAGAATGAAGG  1026

seq1  GCTCAGGAGGACAGGGGCCCAGAGCTGCGATGGGTCACACTTACACATGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGAGGACAGGGGCCCAGAGCTGCGATGGGTCACACTTACACATGA  1076

seq1  AATACTGGAAGGCCTTGGAATTC  1123
      |||||||||||||||||||||||
seq2  AATACTGGAAGGCCTTGGAATTC  1099