BAC Information

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BAC

Clone NameB6Ng01-118B05
Chromosome5 (Build37)
Map Location 17,993,746 - 17,994,724
singlet/doubletsinglet
Overlap genenone
Upstream geneEG630927, Sema3c, Cd36, Gnat3, Gnai1, LOC100041818
Downstream geneLOC668167, 4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118B05.bB6Ng01-118B05.g
ACCDH922651DH922652
length1,1671,222
definitionDH922651|Mus musculus domesticus DNA, BAC clone: B6Ng01-118B05, 5' end.DH922652|Mus musculus domesticus DNA, BAC clone: B6Ng01-118B05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatacaggatcattattaagaattaaggatatctatatagcatca
ctacaagatagtacatctttgttgatctgcagaaatctgcccaatagggt
gggctaatgcctagagattatatattaattctataaggacaagaaaggca
tttcagctggaagaaacaatactgagatgaagtctttttaggaccttgcc
tcaaagatctcgcccatcacagaccatgcaaaaaatggtggaccacctcc
aagaaaaccatcgactagacttaacctattctagatggctcctgacattg
acagaatggatcagagataggatacacctaactctcaggagaatgggcaa
gaaagaaaagctatttaagagcagcacagagagaaagaaagagagtcagt
gagttgggagtcagtgaaatgagtgcagtacaatgaattctttcatgtat
tcatgcaatttagtgcaggactgtagaagcagttgaaggtagagaaggag
ctagaagattagaacaaattgccagagccagttttgccaaggagagcaat
ccagaagccagtttgaatcagtcaacttagagaggagtttgaggcagagc
agctgagtagatacagccagacagagttcagaaagagctagtaagggtaa
gcttattcagcaggaagtctcctagataacaactaacatcagacaaataa
aagttacttgtacaataatcctttctttctttttttatatgtatttctgc
atttttttaattagatattttctttctttacatttcaaatgtcccctttc
ctggtttcctctcctaaaactccctatctcctcccccagccccctgctca
ccaacccacccactcctgcttcttggccctggcattcacctacactgggg
catagagccttcataggaccaaagggcctctcctcccattgatgaccaac
tagaccatcctctgctacatatgcagctggagccatgagtcccaccaagt
gtattctttgtacaataatcctttctaattcacatagattctaagtgctc
tatagtcagctgacgagtatactatcatcatcatctatcatcatcatcat
catcatcactatcatcactatcatcacatctccatgctagagacgaacct
tgccttgtgcatgttag
gaattcaagcagttcaatgcaggtactcaaaagcagttaaaaccagagaa
ctatgagtcagaatattagaacaaagtaccagaggcagtttttgccaagc
aaagcaattcaatttagacagaagccagtttgaatcaggcagcactgaga
ggagtttgagccaaaacaactgatttgaatcagccagccaaagttcagaa
agagctagaaaaggtgagcttattcagtagtaagtctctaagatgacagt
tacatcaggcaaatagaagttacttctacaattaaagttgtctcagagat
ggaagatcaaagcattaaaaaatatatggaggtggactatactgatttga
ccaatggttgattgaaagagtaagaagaagggaaaaaatcaaagatgcct
ctatatgtctaacataggctactgaataaatccatggtgatgttagttaa
caaaaataccaaaatgttggaaaccaaccagcagctcacaagaaacgggg
tttcacctgggaggcaaaccaggcctgaaaagagaggagaattaggtggg
cgagaaaaatggagccaagaccaggttcctaaccaaggctcaaatgttta
atggagaatgcacttataaaggaggtggggggagaggcccgttcccacca
attcattcttggagcttggaaccagcttcaggtgatgacatgcaggatag
gatgtagtctctggaatagctcggcagcttccccaaaggtagcagtatct
tgaagaggaacagagacagtggctgaacaatagagtgaactagggaggaa
ggctctaccctaggtaatctcctgagtggtagcaagatcaaggtctagct
cagcctgcttcagcttggagaggtacaatttcctccctgttattaatatt
taaaaaaaaaaagctggactgagcataaaatttatttatgctctatagtt
ctgcctgatttctttggcctagtgaagaactgtctcagtgggatcctaac
ttttctcatgtaaacccacctatcactagcattggtttggttagactgat
actactcagtactcctgcgactagcctgagcatctgcttgtccttgtaat
gctaattagttactgaatagtactcttactgattcatctgattcaagttg
gcacttaagcttcgactggacttgctaagctagcatgtcagatcatccta
agccctattataggaaatatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17993746_17994724
seq2: B6Ng01-118B05.b_257_1209

seq1  CATCACAGACCATGCAAAAAATGGTGGACCACCTCCAAGAAAACCATCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAGACCATGCAAAAAATGGTGGACCACCTCCAAGAAAACCATCGA  50

seq1  CTAGACTTAACCTATTCTAGATGGCTCCTGACATTGACAGAATGGATCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTTAACCTATTCTAGATGGCTCCTGACATTGACAGAATGGATCAG  100

seq1  AGATAGGATACACCTAACTCTCAGGAGAATGGGCAAGAAAGAAAAGCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGATACACCTAACTCTCAGGAGAATGGGCAAGAAAGAAAAGCTAT  150

seq1  TTAAGAGCAGCACAGAGAGAAAGAAAGAGAGTCAGTGAGTTGGGAGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGCAGCACAGAGAGAAAGAAAGAGAGTCAGTGAGTTGGGAGTCAG  200

seq1  TGAAATGAGTGCAGTACAATGAATTCTTTCATGTATTCATGCAATTTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGAGTGCAGTACAATGAATTCTTTCATGTATTCATGCAATTTAGT  250

seq1  GCAGGACTGTAGAAGCAGTTGAAGGTAGAGAAGGAGCTAGAAGATTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACTGTAGAAGCAGTTGAAGGTAGAGAAGGAGCTAGAAGATTAGAA  300

seq1  CAAATTGCCAGAGCCAGTTTTGCCAAGGAGAGCAATCCAGAAGCCAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGCCAGAGCCAGTTTTGCCAAGGAGAGCAATCCAGAAGCCAGTTT  350

seq1  GAATCAGTCAACTTAGAGAGGAGTTTGAGGCAGAGCAGCTGAGTAGATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGTCAACTTAGAGAGGAGTTTGAGGCAGAGCAGCTGAGTAGATAC  400

seq1  AGCCAGACAGAGTTCAGAAAGAGCTAGTAAGGGTAAGCTTATTCAGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGACAGAGTTCAGAAAGAGCTAGTAAGGGTAAGCTTATTCAGCAGG  450

seq1  AAGTCTCCTAGATAACAACTAACATCAGACAAATAAAAGTTACTTGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCCTAGATAACAACTAACATCAGACAAATAAAAGTTACTTGTACA  500

seq1  ATAATCCTTTCTTTCTTTTTTTATATGTATTTCTGCATTTTTTTAATTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCTTTCTTTCTTTTTTTATATGTATTTCTGCATTTTTTTAATTAG  550

seq1  ATATTTTCTTTCTTTACATTTCAAATGTCCCCTTTCCTGGTTTCCTCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTTTCTTTACATTTCAAATGTCCCCTTTCCTGGTTTCCTCTCC  600

seq1  TAAAACTCCCTATCTCCTCCCCCAGCCCCCTGCTCACCAACCCACCCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTCCCTATCTCCTCCCCCAGCCCCCTGCTCACCAACCCACCCACT  650

seq1  CCTGCTTCTTGGCCCTGGCATTCACCTACACTGGGGCATAGAGCCTTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTCTTGGCCCTGGCATTCACCTACACTGGGGCATAGAGCCTTCAT  700

seq1  AGGACC-AAGGGCCTCTCCTCCCATTGATGACCAACTAGACCATCCTCTG  749
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCAAAGGGCCTCTCCTCCCATTGATGACCAACTAGACCATCCTCTG  750

seq1  CTACATATGCAGCTGGAGCCATGAGTCCCACCAAGTGTATTCTTTGGTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTACATATGCAGCTGGAGCCATGAGTCCCACCAAGTGTATTCTTT-GTAC  799

seq1  AATAATCCTTTCTAATTCACATAAGATTCTAAGTGCTCTATAGTCAGCTG  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AATAATCCTTTCTAATTCACAT-AGATTCTAAGTGCTCTATAGTCAGCTG  848

seq1  ACAGAGTTATACTATCATCTATCTATCTATCTATCTATCTATCTATCTAT  899
      || ||| ||||||||||||     ||| ||||||| ||| ||| ||| ||
seq2  AC-GAG-TATACTATCATC-----ATC-ATCTATC-ATC-ATC-ATC-AT  886

seq1  CTATCTATCTATCTATCATCTATCTATCTATCATCTCTCTATTGTCTTAG  949
      | ||| |||   ||||||||   ||||| ||||  |||| |   |  |||
seq2  C-ATC-ATC--ACTATCATC--ACTATC-ATCACATCTCCA---TGCTAG  926

seq1  AGACAGAACACCTGGCCTTGTGCATGTTAG  979
      |||| ||  |||| ||||||||||||||||
seq2  AGAC-GA--ACCTTGCCTTGTGCATGTTAG  953