BAC Information

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BAC

Clone NameB6Ng01-118D03
Chromosome5 (Build37)5 (Build37)
Map Location 94,124,284 - 94,125,47993,952,256 - 93,952,984
singlet/doubletsingletsinglet
Overlap geneLOC666075
Upstream geneShroom3, LOC623798, Ankrd56, Sept11, Ccni, LOC100040826, 2010109A12Rik, Ccng2, LOC632115, EG330129, LOC100040885, LOC666064, LOC100040909, C87414
Downstream geneLOC666077, LOC666081, EG665802, LOC100040408, LOC100040981, EG622719, LOC100041003, BC061212, EG622744, LOC100041032, LOC100041042, LOC624421, AA792892, LOC665521, LOC665551, LOC100041102, LOC665560, LOC100041115, LOC624507, LOC621203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118D03.bB6Ng01-118D03.g
ACCDH922738DH922739
length1,1901,078
definitionDH922738|Mus musculus domesticus DNA, BAC clone: B6Ng01-118D03, 5' end.DH922739|Mus musculus domesticus DNA, BAC clone: B6Ng01-118D03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,124,284 - 94,125,479)(93,952,256 - 93,952,984)
sequence
gaattcattgttgtagaagttgatattggagatctgagagcattgtttga
atgcaggtaggaggacactgagctgggagtccttcatcctacacccctgc
aaatccagagtctcgagagtgcctgccactttcatgaggagacctctcag
aggcataagatccaaatccagtaagaccacacctctcaattccagatgtt
ttagctgaaagaggctctgacagcaggcaaaggaatccaaatctctctgt
gaaatcagggagtaagtaatggagagggtcttcaagggtgtcatcaagca
cctagaggtaaaggagacagatggttagttctggcaaatgggcttggaga
ggtttggcagggatatacagagtggtagcaggaatcaggtgccccaatat
tagttttactatgtgattaaggatatcatctatgatgcttcctgttggaa
actgctcagtcatgtcaacctcataatttatctcctggcctcactctaaa
cctgagaaccagttcactgcctaatcccagataacacacagaagaaattc
gatgccaatagaattctgacaggatctcaatatttgctttgtgttcaccg
aatctgcattctatcattccctctgcagtcatgcttgctctcgtttacag
cccaagctctacatcctgtcccatgtattcagcactactgggttcaaaat
atttaacccatgggaagtgggtgatggtagaaggctgttctaacaaatct
gagcatatagctcctgtttaccctgtacttgtgagtcacccaacttctca
ctacacacttccattcctcttcagtttccatttgattgggcggccatgat
tctaggaagaaatacaactgatccttactagatctgacctactctttaca
ccaaatcactttgctacttcatgagtgctcatttgagacactgatttacc
ttgtaaaatttcccttgtataactgagtattcatggaaacaagacataac
ttccagtctttgagtctctaatatttgttcctagtgactggtggcatcat
gtccccataccctttagaaaagagagaaacagatttgctctgatagctga
ccagctcttccatcatgacttaccctagactgaatcatctgggaatctga
gaaaaatgaacttgaaaattgtctgcagacacggtgaatt
gaattcctgaggtcctgtgtgtgtcagaactcctggaagtcaagctctct
ctggaaccatgcgatcatggtgttaccaagctcctgggaccctgaggacc
tgagcatgttagagcgtctgggagtggatttttttctgggtattgtgggg
ctggcttctgagttcacacccaaggtctgctcagggcactggcccagatt
ggaagaaatccatgccactggtcagatggagttcctgggttcccgggtcc
cactcgtctcagttacttcaggtgttggggcagattttgtgtcctcctct
atgatcccgggagtgttaacaccttggagtggatcttctctgggtgttgt
gggtttggctgtggagttcacaccccagttctgctcaggacattggccca
gactggaaggaactggtgccactggtcaggcagagctctacatttgactt
ttcaacagagactctaaaatatagaagggcctgaacagatgtcttgcatc
ttttatgagaccacagatgccaatgtagactactatccctagcagaactc
tcaatcaccatagatggaaaagatattccaagtcaaaagcaaactttaaa
attatctattcaacaaatctagacctacagaaaattttagatgaaaaact
tcagcccaacaggttaactacaactttaaaaactacaggggggctagaga
gatggctcagcagttaagagcattggctgctcttccagaggttctgagtt
caatttccatcaaccacttggtagttcacaatgatctataaggggctctt
atgccctcttctggcatgtcagtgcaaacgcatcagaacactcatacata
aaaaaaaataataacaaatacaataaaatcatccatttcatgtagattaa
aaaaacacacagaaaataattccattacagaataaccaaaataagggaag
cccacacaatcacaactctaacacaccagagagagagggagagaggagag
agaaagtagttgaatgctgactttaccaggtccaggggcagtcttcatac
ttctgctctcaaatttatcatactggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_94124284_94125479
seq2: B6Ng01-118D03.b_47_1236

seq1  GAATTCATTGTTGTAGAAGTTGATATTGGAGATCTGAGAGCATTGTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTGTAGAAGTTGATATTGGAGATCTGAGAGCATTGTTTGA  50

seq1  ATGCAGGTAGGAGGACACTGAGCTGGGAGTCCTTCATCCTACACCCCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGTAGGAGGACACTGAGCTGGGAGTCCTTCATCCTACACCCCTGC  100

seq1  AAATCCAGAGTCTCGAGAGTGCCTGCCACTTTCATGAGGAGACCTCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAGAGTCTCGAGAGTGCCTGCCACTTTCATGAGGAGACCTCTCAG  150

seq1  AGGCATAAGATCCAAATCCAGTAAGACCACACCTCTCAATTCCAGATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAAGATCCAAATCCAGTAAGACCACACCTCTCAATTCCAGATGTT  200

seq1  TTAGCTGAAAGAGGCTCTGACAGCAGGCAAAGGAATCCAAATCTCTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGAAAGAGGCTCTGACAGCAGGCAAAGGAATCCAAATCTCTCTGT  250

seq1  GAAATCAGGGAGTAAGTAATGGAGAGGGTCTTCAAGGGTGTCATCAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAGGGAGTAAGTAATGGAGAGGGTCTTCAAGGGTGTCATCAAGCA  300

seq1  CCTAGAGGTAAAGGAGACAGATGGTTAGTTCTGGCAAATGGGCTTGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGGTAAAGGAGACAGATGGTTAGTTCTGGCAAATGGGCTTGGAGA  350

seq1  GGTTTGGCAGGGATATACAGAGTGGTAGCAGGAATCAGGTGCCCCAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGCAGGGATATACAGAGTGGTAGCAGGAATCAGGTGCCCCAATAT  400

seq1  TAGTTTTACTATGTGATTAAGGATATCATCTATGATGCTTCCTGTTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTACTATGTGATTAAGGATATCATCTATGATGCTTCCTGTTGGAA  450

seq1  ACTGCTCAGTCATGTCAACCTCATAATTTATCTCCTGGCCTCACTCTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCAGTCATGTCAACCTCATAATTTATCTCCTGGCCTCACTCTAAA  500

seq1  CCTGAGAACCAGTTCACTGCCTAATCCCAGATAACACACAGAAGAAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAACCAGTTCACTGCCTAATCCCAGATAACACACAGAAGAAATTC  550

seq1  GATGCCAATAGAATTCTGACAGGATCTCAATATTTGCTTTGTGTTCACCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCAATAGAATTCTGACAGGATCTCAATATTTGCTTTGTGTTCACCG  600

seq1  AATCTGCATTCTATCATTCCCTCTGCAGTCATGCTTGCTCTCGTTTACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCATTCTATCATTCCCTCTGCAGTCATGCTTGCTCTCGTTTACAG  650

seq1  CCCAAGCTCTACATCCTGTCCCATGTATTCAGCACTACTGGGTTCAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCTCTACATCCTGTCCCATGTATTCAGCACTACTGGGTTCAAAAT  700

seq1  ATTTAACCCATGGGAAGTGGGTGATGGTAGAAGGCTGTTCTAACAAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACCCATGGGAAGTGGGTGATGGTAGAAGGCTGTTCTAACAAATCT  750

seq1  GAGCATATAGCTCCTGTTTACCCTGTACTTGTGAGTCACCCAACTTCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATATAGCTCCTGTTTACCCTGTACTTGTGAGTCACCCAACTTCTCA  800

seq1  CTACACACTTCCATTCCTCTTCAGTTTCCATTTGATTGGGCGGCCATGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACACTTCCATTCCTCTTCAGTTTCCATTTGATTGGGCGGCCATGAT  850

seq1  TCTAGGAAGAAATACAACTGATCCTTACTAGATCTGACCTACTCTTTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAAGAAATACAACTGATCCTTACTAGATCTGACCTACTCTTTACA  900

seq1  CCAAATCACTTTGCTACTTCATGAGTGCTCATTTGAGACACTGATTTACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCACTTTGCTACTTCATGAGTGCTCATTTGAGACACTGATTTACC  950

seq1  TTGTAAAATTTCCCTTGTATAACTGAGTATTCATGGAAACAAGACATAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAATTTCCCTTGTATAACTGAGTATTCATGGAAACAAGACATAAC  1000

seq1  TTCCAGTCTTTGGAGTCTCTAAATATTTGTTCCTAGTGACTGGTTGGCAT  1050
      ||||||||||| |||||||| |||||||||||||||||||||| ||||||
seq2  TTCCAGTCTTT-GAGTCTCT-AATATTTGTTCCTAGTGACTGG-TGGCAT  1047

seq1  CATGTCCCCATAACCCTTAAGAAAAGAGAGAAACAGATTTGCTCTGATAG  1100
      ||||||||||| |||||| |||||||||||||||||||||||||||||||
seq2  CATGTCCCCAT-ACCCTTTAGAAAAGAGAGAAACAGATTTGCTCTGATAG  1096

seq1  CTGAACCAGCTC-TCCATCATGACTTACCCTAGGACCTGATTCATCTGGG  1149
      ||| |||||||| ||||||||||||||||||||   |||| |||||||||
seq2  CTG-ACCAGCTCTTCCATCATGACTTACCCTAG--ACTGAATCATCTGGG  1143

seq1  -ATCTGAGAAACATGAAAACATGAAAATTTGCTGCAGACA-GTTGAATT  1196
       |||||||||| |||  ||| ||||||||  ||||||||| | ||||||
seq2  AATCTGAGAAAAATG--AACTTGAAAATTGTCTGCAGACACGGTGAATT  1190

seq1: chr5_93952256_93952984
seq2: B6Ng01-118D03.g_441_1147

seq1  ACCCCAGTTCTGCTCAGGACATTGGCCCAGACTGGAAGGAACTGGTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGTTCTGCTCAGGACATTGGCCCAGACTGGAAGGAACTGGTGCCA  50

seq1  CTGGTCAGGCAGAGCTCTACATTTGACTTTTCAACAGAGACTCTAAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCAGGCAGAGCTCTACATTTGACTTTTCAACAGAGACTCTAAAATA  100

seq1  TAGAAGGGCCTGAACAGATGTCTTGCATCTTTTATGAGACCACAGATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGGCCTGAACAGATGTCTTGCATCTTTTATGAGACCACAGATGCC  150

seq1  AATGTAGACTACTATCCCTAGCAGAACTCTCAATCACCATAGATGGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGACTACTATCCCTAGCAGAACTCTCAATCACCATAGATGGAAAA  200

seq1  GATATTCCAAGTCAAAAGCAAACTTTAAAATTATCTATTCAACAAATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCCAAGTCAAAAGCAAACTTTAAAATTATCTATTCAACAAATCTA  250

seq1  GACCTACAGAAAATTTTAGATGAAAAACTTCAGCCCAACAGGTTAACTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTACAGAAAATTTTAGATGAAAAACTTCAGCCCAACAGGTTAACTAC  300

seq1  AACTTTAAAAACTACAGGGGGGCTAGAGAGATGGCTCAGCAGTTAAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAAAAACTACAGGGGGGCTAGAGAGATGGCTCAGCAGTTAAGAGC  350

seq1  ATTGGCTGCTCTTCCAGAGGTTCTGAGTTCAATTTCCATCAACCACTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTGCTCTTCCAGAGGTTCTGAGTTCAATTTCCATCAACCACTTGG  400

seq1  TAGTTCACAATGATCTATAAGGGGCTCTTATGCCCTCTTCTGGCATGTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAGTTCACAATGATCTATAAGGGGCTCTTATGCCCTCTTCTGGCATGTCA  450

seq1  GTGCAAACGCATCAGAACACTCATACAT-AAAAAAAATAATAACAAAATA  499
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  GTGCAAACGCATCAGAACACTCATACATAAAAAAAAATAATAAC-AAATA  499

seq1  CAATAAAATCATCCATTTCATGTAGATTAAAAAAAACACACAGAAAATAA  549
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAATAAAATCATCCATTTCATGTAGATT-AAAAAAACACACAGAAAATAA  548

seq1  TTCCATTACAGAATAACCAAAATAAGGGAAGCCCACACAATCACAACCTC  599
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCCATTACAGAATAACCAAAATAAGGGAAGCCCACACAATCACAA-CTC  597

seq1  TAACACACCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTAAGT  649
      ||||||||||||||||||| |||||||       |||||||||||| |||
seq2  TAACACACCAGAGAGAGAGGGAGAGAG-------GAGAGAGAAAGT-AGT  639

seq1  TGATTGCTGAACTTTACCAGGTCCAAGGGGGGCAAGTTCTTCATACTTCC  699
      ||| ||||| |||||||||||||||   ||||||   ||||||||||| |
seq2  TGAATGCTG-ACTTTACCAGGTCCA---GGGGCA--GTCTTCATACTT-C  682

seq1  TGCTTCTCAAAAATTTATATCATACTGGTC  729
      ||| |||||||    | |||||||||||||
seq2  TGC-TCTCAAA----TTTATCATACTGGTC  707