BAC Information

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BAC

Clone NameB6Ng01-118J14
Chromosome5 (Build37)
Map Location 12,972,519 - 12,973,686
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069
Downstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118J14.bB6Ng01-118J14.g
ACCDH923033DH923034
length1,2121,152
definitionDH923033|Mus musculus domesticus DNA, BAC clone: B6Ng01-118J14, 5' end.DH923034|Mus musculus domesticus DNA, BAC clone: B6Ng01-118J14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactcttgcacctgcgtacaaggcgtgtttactagttaggcacag
cggaggcccgcgccatcttatatggcgattgctcgcggcacacacggatc
tcctcagagattactggcggcacacatgcgattgctcgcagcacgtaccg
gctttccacacgagcacacattgcagcatccacctcttcaacacaagagt
aggcaacaaaaccaaagcctctgaaacattaccacacaggctgtaagtgt
gccccatttctcagaatgttctctcaagctaccttctgtgggttccaagc
tcagaccaccaataaacagcttcctcaagctgctctgcttcctgtggatc
atggccctccaatttgagactggacttgcctcttccaactcgagttcagt
atgggaccaagttgtcctttaaaaaccagttcatttataaatttctattt
accaaatgaaaaatcattgctgaattatagctttaattaacataaagtta
ttaaatgctgatgtctatattttattgtttcaattataaagtaccatcac
aataataaaacagagcaaaagtaaaagactgcacaggggaaaaaatccta
accagaacaacaataacttgtgctgtaagatcaggaatcaagaaatggga
cctcataaaattgcaaagcttctgtaaggcaaaggacactgtcaataaga
taaaatagcaactaacagattgggaaatgatctttaccaatcctaaatat
gatatagggctaatatccaatatatacaaagaactcaagaagtaagactc
cagaaatccaaagaaccctactaaaaatggggtacagagctaaacaaaga
attttcaactgaataccgaatggctgagaagcacctaaaaaaatgttcaa
catcctcatcatcaggaaatgcaaacaaacaaacaaacaacaacaaaaac
aacaaaaagccctgagattgtacctcacaccagtcagatggctagatcag
aaattagtgtcagcagatgctggcaggatgtgagaagagacactccccca
ttgtgtgggatgcagtgtacagcactctggaaatcagtttgcagtttccc
agaatgaatatagtacctacctgagatcagcaatccacctccttggccat
tacgagattccaacttgtatagttccaagctcgctatatgtttctatgac
gcagccctaaaa
gaattccataattggtccacaaacctgttaacctttcctaaatctgtcca
cccttgttgatttgttgattgggccaataccattgagagttgtctttttt
tttttttaacttttttatttgctcaattcttaatatttttaggatgtaca
ggtcagacataaacaatagaaagggtctatcatatacaggctaccatcaa
atacttataggagacatgagtaactgaatacacacactttagctgtagtt
gccctttttattctgatgattgcctttgcctccagtctagtgtcactgct
ttcagtaacatctatgtgagttctactctaaacaattgccatggctcctg
atattttggaagcataataagacccagccattcttatctaaaagtttcca
tgcaaggcaacatcaaacaccttcatatcaacatgccacgtacaaagtag
attcctggatcaaatatgatctcctacacatactatccaaaccatgtcag
ggcaacactgggctggaataatgtcatgtcttagtttccccttcattcct
tcacctaggaatgtttttctttggcacaagcatagccttctacattttta
gctccatatactctttgtttaaatgatgagttttcagcaaatatttcttt
gacaggatactaattagaaaaatggtctgtcagtttagtattctagcaag
tttagaattccagtaggcagtagactgacagaggaaaattgataaaattt
gtagcccagactggttacatagtagcttacagtccagcctgagctataag
gtcagaccttgtttttaaattgttttttccccaaaagaaagaaatatttg
ttcttatgctctacctatatctagtctgagcagctttctcactcctgtag
attttaggcttcgccatggtgaatttaaagattggtttactctaataatc
acccttcctttaaacagaggtaaacttgaggcagtctggtgtttctgtaa
ggggagcagagaacacaaaagtagaacagacccaaagttctacaacgtag
actggtgagcacgagggtttattgcagtctcttaagggttcttatatagc
acgtagcaataataaccattactctctggggtgggatgcaataggtacaa
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12972519_12973686
seq2: B6Ng01-118J14.g_67_1218

seq1  GAATTCCATAATTGGTCCACAAACCTGTTAACCTTTCCTAAATCTGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAATTGGTCCACAAACCTGTTAACCTTTCCTAAATCTGTCCA  50

seq1  CCCTTGTTGATTTGTTGATTGGGCCAATACCATTGAGAGTTGTCTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTTGATTTGTTGATTGGGCCAATACCATTGAGAGTTGTCTTTTTT  100

seq1  TTTTTTTAACTTTTTTATTTGCTCAATTCTTAATATTTTTAGGATGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAACTTTTTTATTTGCTCAATTCTTAATATTTTTAGGATGTACA  150

seq1  GGTCAGACATAAACAATAGAAAGGGTCTATCATATACAGGCTACCATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGACATAAACAATAGAAAGGGTCTATCATATACAGGCTACCATCAA  200

seq1  ATACTTATAGGAGACATGAGTAACTGAATACACACACTTTAGCTGTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTATAGGAGACATGAGTAACTGAATACACACACTTTAGCTGTAGTT  250

seq1  GCCCTTTTTATTCTGATGATTGCCTTTGCCTCCAGTCTAGTGTCACTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTTTATTCTGATGATTGCCTTTGCCTCCAGTCTAGTGTCACTGCT  300

seq1  TTCAGTAACATCTATGTGAGTTCTACTCTAAACAATTGCCATGGCTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAACATCTATGTGAGTTCTACTCTAAACAATTGCCATGGCTCCTG  350

seq1  ATATTTTGGAAGCATAATAAGACCCAGCCATTCTTATCTAAAAGTTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGGAAGCATAATAAGACCCAGCCATTCTTATCTAAAAGTTTCCA  400

seq1  TGCAAGGCAACATCAAACACCTTCATATCAACATGCCACGTACAAAGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGCAACATCAAACACCTTCATATCAACATGCCACGTACAAAGTAG  450

seq1  ATTCCTGGATCAAATATGATCTCCTACACATACTATCCAAACCATGTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGGATCAAATATGATCTCCTACACATACTATCCAAACCATGTCAG  500

seq1  GGCAACACTGGGCTGGAATAATGTCATGTCTTAGTTTCCCCTTCATTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACACTGGGCTGGAATAATGTCATGTCTTAGTTTCCCCTTCATTCCT  550

seq1  TCACCTAGGAATGTTTTTCTTTGGCACAAGCATAGCCTTCTACATTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTAGGAATGTTTTTCTTTGGCACAAGCATAGCCTTCTACATTTTTA  600

seq1  GCTCCATATACTCTTTGTTTAAATGATGAGTTTTCAGCAAATATTTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATATACTCTTTGTTTAAATGATGAGTTTTCAGCAAATATTTCTTT  650

seq1  GACAGGATACTAATTAGAAAAATGGTCTGTCAGTTTAGTATTCTAGCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGATACTAATTAGAAAAATGGTCTGTCAGTTTAGTATTCTAGCAAG  700

seq1  TTTAGAATTCCAGTAGGCAGTAGACTGACAGAGGAAAATTGATAAAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATTCCAGTAGGCAGTAGACTGACAGAGGAAAATTGATAAAATTT  750

seq1  GTAGCCCAGACTGGTTACATAGTAGCTTACAGTCCAGCCTGAGCTATAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCAGACTGGTTACATAGTAGCTTACAGTCCAGCCTGAGCTATAAG  800

seq1  GTCAGACCTTGTTTTTAAATTGTTTTTTCCCCAAAAGAAAGAAATATTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACCTTGTTTTTAAATTGTTTTTTCCCCAAAAGAAAGAAATATTTG  850

seq1  TTCTTATGCTCTACCTATATCTAGTCTGAGCAGCTTTCTCACTCCTGTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATGCTCTACCTATATCTAGTCTGAGCAGCTTTCTCACTCCTGTAG  900

seq1  ATTTTAGGCTTCGCCAT-GTGAATTTAAAGATTGGTTTACTCTTAATAAT  949
      ||||||||||||||||| |||||||||||||||||||||||| |||||||
seq2  ATTTTAGGCTTCGCCATGGTGAATTTAAAGATTGGTTTACTC-TAATAAT  949

seq1  CACCCTTCCTTTTAAACAGAGGTAAAACTTGAGGCAGTCCTGTGTTTCTG  999
      ||||||||| ||||||||||||| |||||||||||||||  |||||||||
seq2  CACCCTTCC-TTTAAACAGAGGT-AAACTTGAGGCAGTCTGGTGTTTCTG  997

seq1  TAAAGTGAGCAGAGAACACAAAAGTAGAAACAAGACCCAAAGTTTCCTAC  1049
      ||| | |||||||||||||||||||||||   ||||||||||||  ||||
seq2  TAAGGGGAGCAGAGAACACAAAAGTAGAA--CAGACCCAAAGTT--CTAC  1043

seq1  AACGTAGACT-GTGAGCAACAGAGGTTTTTATTGCAGTCTCTTAAAGGGT  1098
      |||||||||| |||||||  || |   ||||||||||||||||||  || 
seq2  AACGTAGACTGGTGAGCACGAGGG---TTTATTGCAGTCTCTTAA--GGG  1088

seq1  TTCTTTATATTTAGCACCGTAGCAATAATAAACCAATACATCTCCTGGGT  1148
      ||||   ||| ||||| |||||||||||| ||||| ||| ||||  ||||
seq2  TTCT---TATATAGCA-CGTAGCAATAAT-AACCATTAC-TCTCTGGGGT  1132

seq1  -GGATGCAATAAGGTACAATG  1168
       ||||||||| ||||||||||
seq2  GGGATGCAAT-AGGTACAATG  1152