BAC Information

Click to search

BAC

Clone NameB6Ng01-119M24
Chromosome5 (Build37)
Map Location 138,878,560 - 138,879,693
singlet/doubletsinglet
Overlap genenone
Upstream geneZan, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1
Downstream gene2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119M24.bB6Ng01-119M24.g
ACCDH923926DH923927
length1,0231,123
definitionDH923926|Mus musculus domesticus DNA, BAC clone: B6Ng01-119M24, 5' end.DH923927|Mus musculus domesticus DNA, BAC clone: B6Ng01-119M24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattctacagacaaggctgtcctgaaactcagatatccatctgtc
tctaccttctgagtgctaggtaggtatataccaccaccaccaagcagctg
ctattgcctcttctccttccttcacctcctcctcctccccctcctcctcc
ttcaccacatttgaagcaagctttattaaatactggctaggtatttggat
actggcctggtccatacttgagatccccaaagtgtggtccctttctctct
taaagtacaaatccaaggtaagagtctggttgtgtaccattttattggtt
tcaactgttccaatgacatggttagctacggtaaccccagaaaaggcact
gcagaacttctgcataatctgcacatagcaactacagctttaataaagcc
actctcacctctagagaaaggatgactttcctgtgataggtacacacttc
ccgttgtttttctgtgttatctggaaatgtatgttgttgtggatgggcct
gcttctgttggtatatgctaattccactctcctagaagaggctgcagaca
aggagtgagtactcaggtgacttcttgtgaaccaatcccctaatgaataa
aggaaccaatcactgggcgagtagggggaacttccgggttggatgacaga
agagaaggaggagagggttagaggccttttggaacagggatagaataagg
gcaaaatgtagctgcttgaatttcctggtatcatggcagatcctttcagg
atttgccaccggaggaatcagatttaatagggcctacaagataaggtttc
agttgttgcacccagagattgagttaccattgtttctgggctgagtttgt
gtggtgttttcttctcactgcaatttgactgggatccagagagaaaggta
ttggtggcaaagcgtgggttcacctgatgtgtaccacaaaagctctggga
actttgaagcatggggctggttgtggtagtgacccaccagtgggggaacc
taggaagataaaaataggtcggg
gaattctgagccatggcaacaaatcattggctcttcatagccttttcctc
accactggtcatagtgttctgaaagcgctgaggaactcaggcaaaaatcc
caactccctttccactcatatagtctgacacttcaagggctactcctgtc
ttttattccctcagtgtaagaaaattgaggtttctgtagtgagtaaatat
actacctaatgataacctctaaagctcattgacatcagcagagacttctg
tgcaaacaaggaagtgtctcagctgaatgaagccctttgctcacccccca
accccaaacctggtaattagagcacctgctagcagattccacagttagtg
gatgtcttagtcaatgttcgatttctgtgaagagttaccatggcctcagc
aactcttatacaagaaagcatttagttggggatgacttacaatttcagaa
gtttaacttcattgttgttgcgggagaggggaacatagcagtatgcagac
agacgtgtactggagaagtgtttgagagttctacatgatctgtaggcagc
tggaagagagccacaggacctggtgttaaacacaggtactggactcatgc
acatgctgggaaaggcttttcctttgaccccccctaccccaaaataaata
ttgtgttgtgctgagttaaaataatcttcattttttcctttaagtgtatg
gaaaaagtttcctttgtcctaattttcttccctcttccctcttttctttc
ctgtcctgttctcactgtgaagcccaggatgagctagaactttgagttct
cctttctcactctccacagtactgggactatagctgtgaaccatcaccct
cagcaataatcaaaacttactgtggtaatctgaatgctaatgggcagcac
tgcttggagaggtggtgaaacatttgggacattgaacttgctagaggaag
tatgccacttggggggctaattgtgacagttataccttctcttaatttca
gtttcctctttaaaagctgctcatgcttgaagtgatggatcatcttaatg
gttgtgctctggcactgctcccctgcttcctccaccataagaccctccct
cggattggagcaaaataaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138878560_138879693
seq2: B6Ng01-119M24.g_69_1191

seq1  GAATTCTGAGCCATGGCAACAAATCATTGGCTCTTCATAGCCTTTTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGCCATGGCAACAAATCATTGGCTCTTCATAGCCTTTTCCTC  50

seq1  ACCACTGGTCATAGTGTTCTGAAAGCGCTGAGGAACTCAGGCAAAAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGGTCATAGTGTTCTGAAAGCGCTGAGGAACTCAGGCAAAAATCC  100

seq1  CAACTCCCTTTCCACTCATATAGTCTGACACTTCAAGGGCTACTCCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCCTTTCCACTCATATAGTCTGACACTTCAAGGGCTACTCCTGTC  150

seq1  TTTTATTCCCTCAGTGTAAGAAAATTGAGGTTTCTGTAGTGAGTAAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCCCTCAGTGTAAGAAAATTGAGGTTTCTGTAGTGAGTAAATAT  200

seq1  ACTACCTAATGATAACCTCTAAAGCTCATTGACATCAGCAGAGACTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTAATGATAACCTCTAAAGCTCATTGACATCAGCAGAGACTTCTG  250

seq1  TGCAAACAAGGAAGTGTCTCAGCTGAATGAAGCCCTTTGCTCACCCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACAAGGAAGTGTCTCAGCTGAATGAAGCCCTTTGCTCACCCCCCA  300

seq1  ACCCCAAACCTGGTAATTAGAGCACCTGCTAGCAGATTCCACAGTTAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAACCTGGTAATTAGAGCACCTGCTAGCAGATTCCACAGTTAGTG  350

seq1  GATGTCTTAGTCAATGTTCGATTTCTGTGAAGAGTTACCATGGCCTCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTTAGTCAATGTTCGATTTCTGTGAAGAGTTACCATGGCCTCAGC  400

seq1  AACTCTTATACAAGAAAGCATTTAGTTGGGGATGACTTACAATTTCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTATACAAGAAAGCATTTAGTTGGGGATGACTTACAATTTCAGAA  450

seq1  GTTTAACTTCATTGTTGTTGCGGGAGAGGGGAACATAGCAGTATGCAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAACTTCATTGTTGTTGCGGGAGAGGGGAACATAGCAGTATGCAGAC  500

seq1  AGACGTGTACTGGAGAAGTGTTTGAGAGTTCTACATGATCTGTAGGCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTGTACTGGAGAAGTGTTTGAGAGTTCTACATGATCTGTAGGCAGC  550

seq1  TGGAAGAGAGCCACAGGACCTGGTGTTAAACACAGGTACTGGACTCATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGAGCCACAGGACCTGGTGTTAAACACAGGTACTGGACTCATGC  600

seq1  ACATGCTGGGAAAGGCTTTTCCTTTGACCCCCCCTACCCC-AAATAAATA  649
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACATGCTGGGAAAGGCTTTTCCTTTGACCCCCCCTACCCCAAAATAAATA  650

seq1  TTGTGTTGTGCTGAGTTAAAATAATCTTCA-TTTTTCCTTTAAGTGTATG  698
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGTGTTGTGCTGAGTTAAAATAATCTTCATTTTTTCCTTTAAGTGTATG  700

seq1  GAAAAAGTTTCCTTTGTCCTAA-TTTCTTCCCTCTTCCCTCTTTTCTTTC  747
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAAAAAGTTTCCTTTGTCCTAATTTTCTTCCCTCTTCCCTCTTTTCTTTC  750

seq1  CTGTCCTGTTCTCACTGTGAAGCCCAGGATGAGCTAGAACTTTGAGTTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGTTCTCACTGTGAAGCCCAGGATGAGCTAGAACTTTGAGTTCT  800

seq1  CCTTACTCACTCTCCACAGTACTGGGACTATAGCTGTGAACCATCACCCT  847
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCACTCTCCACAGTACTGGGACTATAGCTGTGAACCATCACCCT  850

seq1  CAGCAATAATCAAAACTTACTGTGGTAATCTGAATGCTAATGGGCAGCAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATAATCAAAACTTACTGTGGTAATCTGAATGCTAATGGGCAGCAC  900

seq1  TGCTTGGAGAGGTGGTGAAACATTTGGGACATTGAACCTTGCTAGAGGAA  947
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGCTTGGAGAGGTGGTGAAACATTTGGGACATTGAA-CTTGCTAGAGGAA  949

seq1  GTATGCCAC-TGGGGGGCTAATTGTGACAGTTTATACCTTCTCCTTATTT  996
      ||||||||| |||||||||||||||||||| ||||||||||| |||| ||
seq2  GTATGCCACTTGGGGGGCTAATTGTGACAG-TTATACCTTCT-CTTAATT  997

seq1  CCAGTTTTCCCTCTTTATAAGCTGCTCATGCTTTGAGTGATGGTATCATC  1046
       ||||||  |||||||| |||||||||||||||  |||||||| ||||||
seq2  TCAGTTT--CCTCTTTAAAAGCTGCTCATGCTTGAAGTGATGG-ATCATC  1044

seq1  TCTAAGTGTTGTGCTCTGGCCACCTGCTCCCCTGCTTCCTCCACCATTAT  1096
      | |||  |||||||||||||   ||||||||||||||||||||||||   
seq2  T-TAATGGTTGTGCTCTGGC--ACTGCTCCCCTGCTTCCTCCACCAT--A  1089

seq1  AGACTCTCCCTCTGGAATTGTGAGCCAAAATAAATTTT  1134
      |||| |||||||  | |||| ||| |||||||||||||
seq2  AGACCCTCCCTC--GGATTG-GAG-CAAAATAAATTTT  1123