BAC Information

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BAC

Clone NameB6Ng01-119N10
Chromosome5 (Build37)
Map Location 10,435,101 - 10,436,230
singlet/doubletsinglet
Overlap geneLOC100041395
Upstream gene9330182L06Rik, Grm3, LOC100042768, LOC625446, LOC435832, LOC381612
Downstream geneEG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119N10.bB6Ng01-119N10.g
ACCDH923946DH923947
length1,2451,110
definitionDH923946|Mus musculus domesticus DNA, BAC clone: B6Ng01-119N10, 5' end.DH923947|Mus musculus domesticus DNA, BAC clone: B6Ng01-119N10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaccagaggaatctcaaataggagagaagcactttaaaaaaaa
tgtaaaaagttcttagtcacgagggaaatgcaactcaaaattaccctgag
gttccatcttgcatccatcagaatggctaagattgaaaattcaaatagca
catgctggcgaggatggagagcaaggggaccattcctccattggggtggg
agtgcaaatttgtacaaccaaccattttggatgtcaatttgtcagtttct
tagaaaactggataaagttcttcctcaagatccagttatacgactctggg
gcacatctctaacagatgttctacaatacctacaaggatacttgctcagc
tgtgttcatagcagctttaatcataatagccaaacactggaaaccagttg
gatgtccctcaactgaagaatgaataaagaaaatgtggtatatccacaca
atggaatactattcagctatttttaaaaattcatcatggattttgcagga
aaatgggtggaacttgacaatatcatcttgagtgagataaccctgaatca
ataggatgtgcattgcattataagtggatattagctgtaaaatacggaat
acttacactacaatccaaagacccaaagaagctaacaagggaggaaaact
gaagtggggatccttgaattgcatttataagagggaatgaaatacttata
gaaggcagatggagaaagggaactgtgtgtgggaagcaatggagagtgaa
attcgggggtcgttcatgatcatgtgcagggaaaagcaggaaagattgcc
agagaactacaagaatgaatggaaaactgcattcatatatgggggatggg
tgatatggagctaactcaaggacctgccagatacctgggataggggaggt
tgccaagtatcagtggggctgtgcttagctgagattcacagcagtgggga
taaggaatctgaagatgctgctcctgtgccaggcagaccccagtgagtga
agcataggacacgatctcacccacaactgtcatcaaaatatcacgtctac
agaaatttacgagtgggatgtatcagaaactggaggaaatgttaactgcc
acttgaacccatccaatgaaggtccaatctgaactatcaaaatattatgg
ctgtagacggagctgatcaagggtgttctcaagttcactaggtataatcc
aagtatcggatcagaaccgaaccatggatgagggtgcctcattga
gaattcaccctacttagtattcatagtattgctaatcacagagaaataat
ctttcagaggttgacaaagtaaagacaaataaaatggatggtcaaaaatt
agcatgaacttaaattgatctgttgatgttgatgtaaaaggactctataa
ctttagaacatgggatatcccatacaagattgattgatgctagccattta
ctgtcttctacagacatcattttgctacatgtttgaggaagttttagttt
attttctcctgacctggttagcttaattcagtatttaaattttatttatt
tattcattactttcttctttcaattcccccaaaggatcacaggtaggctt
aactagaatgtccctaacaaaacatggctcttgttcctatttctgattca
gtttactgatgcttttgtataaacgtttatcatcttctgaaaatttgcat
ttcataagtggtatttgtattacttattccataacttctctttataaacc
tacttgtgattttgatatttcacttagacttttgaatttacaagtcttgc
atatcaatgtgtgtatttgtttgattgaccttacatctctgcttccaaaa
atttccaaaatataaaatattccttaaaatgacacactcttgatatatat
atatatatatatatatatatatatatatatggcttatttagtttataaag
tagcttgtagtttagagaataatttcagtgcagtaagaaaataactgttc
tgagcaaggaagcatataaaatcatcaaccatgagtatctgtgtatgaat
tcagataagttgaagctactaaaacatgtctccatattttagtgtagcag
ttttcaaaagtattttatacacttctacagagattatttaaatatgtatt
gctaagctcataactgggtgactgggtccactctagaatttgtttcctta
agaggtcccagagtggaatggcttcagcataaagctctgagaaaccctga
gtacagatgttgtacgttatactctctaactctaattctttaaataaaca
gtcatgaaacctaactcaacttaatattacattacatacccacaggcttt
tctagtttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_10435101_10436230
seq2: B6Ng01-119N10.g_69_1178 (reverse)

seq1  ATAAACTAGAAAAAGCCTGGTGTGGTAATGTGTAATGGTAATATTAAGTT  50
      ||||||||| |||||||| ||| ||||   |||||| |||||||||||||
seq2  ATAAACTAG-AAAAGCCT-GTG-GGTA---TGTAAT-GTAATATTAAGTT  43

seq1  GAGTTAAGTGTTCATGACCTTGTTTATCTAAAAGATATTAGAGTTAGAGA  100
      |||||| || ||||||||  ||||||| | ||||| ||||||||||||||
seq2  GAGTTAGGT-TTCATGAC--TGTTTAT-TTAAAGA-ATTAGAGTTAGAGA  88

seq1  GTTATAAACGTACATACAATCTGTTACTTCAGGGTTTCTCAGAGCTTTAT  150
      | ||| |||||||| || ||||| ||| ||||||||||||||||||||||
seq2  G-TAT-AACGTACA-AC-ATCTG-TAC-TCAGGGTTTCTCAGAGCTTTAT  132

seq1  GCTGAAGCCATTCCACTCTGGGGACCTCTTAAGGAAACAAATTCTAGAGT  200
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCTGAAGCCATTCCACTCT-GGGACCTCTTAAGGAAACAAATTCTAGAGT  181

seq1  GGACCCAGTCACCCAGTTATGAGCTTAGCAATACATATTTAAATAATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCAGTCACCCAGTTATGAGCTTAGCAATACATATTTAAATAATCTC  231

seq1  TGTAGAAGTGTATAAAATACTTTTGAAAACTGCTACACTAAAATATGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGTGTATAAAATACTTTTGAAAACTGCTACACTAAAATATGGAG  281

seq1  ACATGTTTTTAGTAGCTTCAACTTATCTGAATTCATACACAGATACTCAT  350
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATG-TTTTAGTAGCTTCAACTTATCTGAATTCATACACAGATACTCAT  330

seq1  GGTTGATGATTTTATATGCTTCCTTGCTCAGAACAGTTATTTTCTTACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGATGATTTTATATGCTTCCTTGCTCAGAACAGTTATTTTCTTACTG  380

seq1  CACTGAAATTATTCTCTAAACTACAAGCTACTTTATAAACTAAATAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAATTATTCTCTAAACTACAAGCTACTTTATAAACTAAATAAGCC  430

seq1  ATATATATATATATATATATATATATATATATATATATCAAGAGTGTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATCAAGAGTGTGTC  480

seq1  ATTTTAAGGAATATTTTATATTTTGGAAATTTTTGGAAGCAGAGATGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGGAATATTTTATATTTTGGAAATTTTTGGAAGCAGAGATGTAA  530

seq1  GGTCAATCAAACAAATACACACATTGATATGCAAGACTTGTAAATTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAATCAAACAAATACACACATTGATATGCAAGACTTGTAAATTCAAA  580

seq1  AGTCTAAGTGAAATATCAAAATCACAAGTAGGTTTATAAAGAGAAGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAGTGAAATATCAAAATCACAAGTAGGTTTATAAAGAGAAGTTAT  630

seq1  GGAATAAGTAATACAAATACCACTTATGAAATGCAAATTTTCAGAAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAGTAATACAAATACCACTTATGAAATGCAAATTTTCAGAAGATG  680

seq1  ATAAACGTTTATACAAAAGCATCAGTAAACTGAATCAGAAATAGGAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACGTTTATACAAAAGCATCAGTAAACTGAATCAGAAATAGGAACAA  730

seq1  GAGCCATGTTTTGTTAGGGACATTCTAGTTAAGCCTACCTGTGATCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATGTTTTGTTAGGGACATTCTAGTTAAGCCTACCTGTGATCCTTT  780

seq1  GGGGGAATTGAAAGAAGAAAGTAATGAATAAATAAATAAAATTTAAATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAATTGAAAGAAGAAAGTAATGAATAAATAAATAAAATTTAAATAC  830

seq1  TGAATTAAGCTAACCAGGTCAGGAGAAAATAAACTAAAACTTCCTCAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAAGCTAACCAGGTCAGGAGAAAATAAACTAAAACTTCCTCAAAC  880

seq1  ATGTAGCAAAATGATGTCTGTAGAAGACAGTAAATGGCTAGCATCAATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCAAAATGATGTCTGTAGAAGACAGTAAATGGCTAGCATCAATCA  930

seq1  ATCTTGTATGGGATATCCCATGTTCTAAAGTTATAGAGTCCTTTTACATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTATGGGATATCCCATGTTCTAAAGTTATAGAGTCCTTTTACATC  980

seq1  AACATCAACAGATCAATTTAAGTTCATGCTAATTTTTGACCATCCATTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAACAGATCAATTTAAGTTCATGCTAATTTTTGACCATCCATTTT  1030

seq1  ATTTGTCTTTACTTTGTCAACCTCTGAAAGATTATTTCTCTGTGATTAGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCTTTACTTTGTCAACCTCTGAAAGATTATTTCTCTGTGATTAGC  1080

seq1  AATACTATGAATACTAAGTAGGGTGAATTC  1130
      ||||||||||||||||||||||||||||||
seq2  AATACTATGAATACTAAGTAGGGTGAATTC  1110