BAC Information

Click to search

BAC

Clone NameB6Ng01-120C13
Chromosome5 (Build37)
Map Location 14,907,582 - 15,196,257
singlet/doubletdoublet
Overlap geneENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1
Upstream geneSema3e, LOC100042957, Pclo
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120C13.bB6Ng01-120C13.g
ACCDH924175DH924176
length1,0111,085
definitionDH924175|Mus musculus domesticus DNA, BAC clone: B6Ng01-120C13, 5' end.DH924176|Mus musculus domesticus DNA, BAC clone: B6Ng01-120C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,907,582 - 14,908,423)(15,195,159 - 15,196,257)
sequence
gaattctgcactacaactttctgcccttgggcttttttggagtggaggac
ttttgatgactgtttctatattcttaggggttataggcctgttaattact
ttaccagatcttcatttaactttgataattgatagctgtctataagtcac
ccatttcatttggattttgctattttttgcagtacaggcttctgcagaaa
gacctagtgattctttcaatttcctcagtgtccattgttatgtctcctgt
ttcatttctgattttgctattctgggtattgtctctctacctttcagtta
atttggctaagcataagtctaccttgttgattgtctcaaagaacaggatc
ttggtttcacggattctttgtactgttctctctgtatcaaattgactgaa
ttcagcatttattccctgacggcaaatcctacctatctctccatgagatg
aggctttgtctcacattaggaactgcagaatgcaatacaccaaaaccttg
ctgatctccatggtggtgatgcacaccacagcctcacggtgaacatctac
actggcaggtttcagggtatgttgaagtagtccaccatgtcagtgtaacc
tgcaaagtgccatgagacaatactaatagaaatctgcaggattcctccac
attagatttcactatggtcttcaatatcattttgtaaagaaatactatgg
gttcacagatacacacacacacacacacaaacatgaagaccatacgactt
tatgggaggattgttctctctactatgtgcattccaaggaaaaaattctg
gtttctaggcttgacagcaatgatgaatacctgctcaccatgtcaaactt
ggttcagatccacacatggctctgtcatgatttctgttgtcccagagctt
gtagctcctgattcatatctagcacatcatttggttttgtgaataaagct
tttcctgtgcacctggtcacttatttctgtattgtctgtgacagcgtctt
tcacaataaga
gaattctttctgctcatcacaagccgtcagtaacagaatgtgggtggtga
gaattagtgcttatttgttgatgaagaagtaagaacatacatacatcagg
gaccacattttgaatgtgttttgtggtacagcctaggttttgggtgttta
tgaacagtacacttgaggaaaccttggaattgacagctttatgtgctcta
cattaaaatataacttttacatttgctacatttacatgacgatgaataaa
ccccaatgattgcttactgcgttataacactgttgttagtgttaacccac
gtgactgtcaggatgtacacagagatggtcgtaacttagcaacttatctt
cagctattttatagactgttaagacaacagccatgatagtattatattag
gactgtcatgcttttaaatgttaaaaaatgcttgtatgtataaaatataa
aattgcaaaagagcagtaactcattgacattgttatagattaaactttat
tcatttaaaaagtaaactttaattttgttagggaatttaaacaacaagaa
cccaataaaaagaaataatatactatgtttttatacaaaacttgtaattt
aaagcatgttattttgtaaattttactaagctcagatcaatattttaaga
aatattagttaatctagatggaaaagccctatcgctgaagacaacaccta
catactggagaagtcatgctggtgtctaactagagctttcacccctgctg
actggtgatcatgatctgtaaggtactctgcttgctaccagagcagaaag
gcaaacatcaacccagctgcaaccattcattctacagtgatgaccagcct
gcgtgatatgctagtggatccatagtacaaaaggatggcataaccagcac
catctgattcaatttaaggctcactctacagataggatccatgtctgaca
ttcttgggtagccaaatcctgggactagttaagctagggtaaaccaaatg
cttatgttctgcttaaggacttagtaaataaaatgactcaataaatcctg
ctgcatcctgttcaatactgctcagcaatcatcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14907582_14908423
seq2: B6Ng01-120C13.b_48_892

seq1  GAATTCTGCACTACAACTTTCTGCCCTTGGGCTTTTTTGGAGTGGAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCACTACAACTTTCTGCCCTTGGGCTTTTTTGGAGTGGAGGAC  50

seq1  TTTTGATGACTGTTTCTATTTTCTTAGGGGTTATAGGCCTGTTAGTTACT  100
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  TTTTGATGACTGTTTCTATATTCTTAGGGGTTATAGGCCTGTTAATTACT  100

seq1  TTACCAGATCTTCATTTAACTTTGATAATTGATAGCTGTCTATAAGTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGATCTTCATTTAACTTTGATAATTGATAGCTGTCTATAAGTCAC  150

seq1  CCATTTCATTTGGATTTTGCTATTTTTTGCAGTACAGGCTTCTGCAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCATTTCATTTGGATTTTGCTATTTTTTGCAGTACAGGCTTCTGCAGAAA  200

seq1  GACCTAGTGATTCTTTCAATTTCCTCAGTGTCCATTGTTATATCTCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GACCTAGTGATTCTTTCAATTTCCTCAGTGTCCATTGTTATGTCTCCTGT  250

seq1  TTCATTTCTGATTTTGCTATTCTGGGTATTGTCTCTCTACCTTTCAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCTGATTTTGCTATTCTGGGTATTGTCTCTCTACCTTTCAGTTA  300

seq1  ATTTGCCTAAGCATAAGTCTACCTTGTTGATTGTCTCAAAGAACAGGATC  350
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCTAAGCATAAGTCTACCTTGTTGATTGTCTCAAAGAACAGGATC  350

seq1  TTGGTTTCACGGATTCTTTGTACTGTTCTCTCTGTATCAAATTGACTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTCACGGATTCTTTGTACTGTTCTCTCTGTATCAAATTGACTGAA  400

seq1  TTCAGCATTTATTCCCTGATGGCAAATCCTACCTATCTCTCCATGAGATG  450
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTCAGCATTTATTCCCTGACGGCAAATCCTACCTATCTCTCCATGAGATG  450

seq1  AGGCTTTGTCTCACATTAAGAACTGCAGAATGCAATACATCAAAACCTTG  500
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  AGGCTTTGTCTCACATTAGGAACTGCAGAATGCAATACACCAAAACCTTG  500

seq1  CTGATCTCCATGGTGGTGATGCACACCACAGCCTCATGGTGAACATCTAC  550
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTGATCTCCATGGTGGTGATGCACACCACAGCCTCACGGTGAACATCTAC  550

seq1  ACTGGCAGGTTTCAGGGTATGTTGAAGTAGTCCACCATGTCAGTGTAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCAGGTTTCAGGGTATGTTGAAGTAGTCCACCATGTCAGTGTAACC  600

seq1  TTCAAAGTGCCATGAGACAATACTAATAGAAATCTGCAAGATTCCTCCAC  650
      | |||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGCAAAGTGCCATGAGACAATACTAATAGAAATCTGCAGGATTCCTCCAC  650

seq1  ATTAGATTTCACTATGGTCTTCAATGTCATTTTGTAAAGAAATACTATGG  700
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTAGATTTCACTATGGTCTTCAATATCATTTTGTAAAGAAATACTATGG  700

seq1  GTTCACAGAT----ACACACACACACACAAACATGAAGACCAGAGGACTT  746
      ||||||||||    |||||||||||||||||||||||||||| | |||||
seq2  GTTCACAGATACACACACACACACACACAAACATGAAGACCATACGACTT  750

seq1  TATGGGAGGATTGTTCTCTCTACTATGTGCATTCCAAGGAAAAAATTCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAGGATTGTTCTCTCTACTATGTGCATTCCAAGGAAAAAATTCTG  800

seq1  GTTTCTAGGCTTGACAGCAATGATGAATACCTGCTCAACCATGTCA  842
      |||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTTTCTAGGCTTGACAGCAATGATGAATACCTGCTC-ACCATGTCA  845

seq1: chr5_15195159_15196257
seq2: B6Ng01-120C13.g_72_1153 (reverse)

seq1  CTGATGATGGCTGAGCAAGTCATTGAACCAAGGATGCAGCAGGATTTTGT  50
      |||||||| ||||||| ||| |||||||  |||||||||||||| ||| |
seq2  CTGATGATTGCTGAGC-AGT-ATTGAAC--AGGATGCAGCAGGA-TTTAT  45

seq1  TGAGTAATTTTATTTTACTAAGTTCCTTTAGCAGAACATTAGCATTTGGT  100
      ||||| |||||| ||||||||| ||||| |||||||||| ||||||||| 
seq2  TGAGTCATTTTA-TTTACTAAG-TCCTTAAGCAGAACATAAGCATTTGG-  92

seq1  TTTACCCTAGCTTTAACTAGTCTCAGGATTTTGGCTACCCAAGCATTGTC  150
      ||||||||||| |||||||||| ||||| |||||||||||||| | ||||
seq2  TTTACCCTAGC-TTAACTAGTCCCAGGA-TTTGGCTACCCAAG-AATGTC  139

seq1  AGGCATGGATCCTATCTCGTAGAGTGAGCCTTAAATTGAATCAGATGGTG  200
      || |||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  AGACATGGATCCTATCT-GTAGAGTGAGCCTTAAATTGAATCAGATGGT-  187

seq1  GCTGGTTATGCCCATTCCTTTTGTACTATGGATCCACTAGCATATCACGC  250
      ||||||||||||   |||||||||||||||||||||||||||||||||||
seq2  GCTGGTTATGCC--ATCCTTTTGTACTATGGATCCACTAGCATATCACGC  235

seq1  AGGCTGGTCATCACTGTAGAATGAATGGTTTGTAGCTGGGTTGATGTTTG  300
      |||||||||||||||||||||||||||| ||| |||||||||||||||||
seq2  AGGCTGGTCATCACTGTAGAATGAATGG-TTGCAGCTGGGTTGATGTTTG  284

seq1  CCTTTCTGCTCTGGTAGCAAGCAGAGTACCTTACAGATCGTGATCACCAG  350
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCTTTCTGCTCTGGTAGCAAGCAGAGTACCTTACAGATCATGATCACCAG  334

seq1  TCAGCAGGGGTGAAAGCTCTAGTTAGACACCAGCATGACTTCTCCAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGGGGTGAAAGCTCTAGTTAGACACCAGCATGACTTCTCCAGTAT  384

seq1  GTAGGTGTTGTCTTCAGCGATAGGGCTTTACCATCTAGATTAACTAATAT  450
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTAGGTGTTGTCTTCAGCGATAGGGCTTTTCCATCTAGATTAACTAATAT  434

seq1  TTCTTAAAATATTGATCTGAGCTTAGTAAAATTTACAAAATAACATGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAAATATTGATCTGAGCTTAGTAAAATTTACAAAATAACATGCTT  484

seq1  TAAATTACAAGTTTTGTATAAAAAGATAGTATATTATTTCTTTTTATTGG  550
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAAATTACAAGTTTTGTATAAAAACATAGTATATTATTTCTTTTTATTGG  534

seq1  GTTCTTGTTGTTTAAATTCCTTAACAAAATTAAAGTTTACTTTTTAAATG  600
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTTCTTGTTGTTTAAATTCCCTAACAAAATTAAAGTTTACTTTTTAAATG  584

seq1  AATAAAGTTTAATCTATAACAATCTCAATGAGTTACTGCTCTTTTGCAAT  650
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AATAAAGTTTAATCTATAACAATGTCAATGAGTTACTGCTCTTTTGCAAT  634

seq1  TTTATATTTTATACATACAAGCATTTTTTAACATTTAAAAGCATGACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTTATACATACAAGCATTTTTTAACATTTAAAAGCATGACAGT  684

seq1  CCTAATATAATACTATCATGGCTGTTGTCTTAACAGTCTATAAAAATAGC  750
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTAATATAATACTATCATGGCTGTTGTCTTAACAGTCTAT-AAAATAGC  733

seq1  TGAAGATAAGTTGCTAAGTTACGACCATCTCTGTGTACATCCTGACAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATAAGTTGCTAAGTTACGACCATCTCTGTGTACATCCTGACAGTC  783

seq1  ACGTGGGTTAACACTAACAACAGTATTATAACGCAGTAAGCAATCATTGG  850
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACGTGGGTTAACACTAACAACAGTGTTATAACGCAGTAAGCAATCATTGG  833

seq1  GGTTTATTCATCGTCATGTAAATGTAACAAATATAAAAGTTATATTTTAA  900
      |||||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  GGTTTATTCATCGTCATGTAAATGTAGCAAATGTAAAAGTTATATTTTAA  883

seq1  TGTAGAGCATATAAAGCTGTCAATTCCAAGGTTTCCTCAAGTATACTGTT  950
      ||||||||| |||||||||||||||||||||||||||||||| |||||||
seq2  TGTAGAGCACATAAAGCTGTCAATTCCAAGGTTTCCTCAAGTGTACTGTT  933

seq1  CATAAACACCCAAAACCTAGGCTGTACCACAAAACACATTCAAAATGTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACACCCAAAACCTAGGCTGTACCACAAAACACATTCAAAATGTGG  983

seq1  TCCCTGATGTATGTATGTTCTTACTTCTTCATCAACAAATAAGCACTAGT  1050
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCCCTGATGTATGTATGTTCTTACTTCTTCATCAACAAATAAGCACTAAT  1033

seq1  TCTCACCACCCACATTCTGTTAGTGACGGCTTGTGATGAGCAGAAAGAA  1099
      |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTCACCACCCACATTCTGTTACTGACGGCTTGTGATGAGCAGAAAGAA  1082