BAC Information

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BAC

Clone NameB6Ng01-120E02
Chromosome5 (Build37)
Map Location 121,903,095 - 122,063,092
singlet/doubletdoublet
Overlap geneTmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik
Upstream geneSdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29
Downstream geneAcad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120E02.bB6Ng01-120E02.g
ACCDH924247DH924248
length1,049407
definitionDH924247|Mus musculus domesticus DNA, BAC clone: B6Ng01-120E02, 5' end.DH924248|Mus musculus domesticus DNA, BAC clone: B6Ng01-120E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,903,095 - 121,904,142)(122,062,680 - 122,063,092)
sequence
gaattccttattggagacgacagagggatcgtggccagcaggctgtgtga
gccagcacaggacattcaatcccagtgctagctgggaaaactggcaggct
ggtctctgagttggaagccaaacctcatccatatactgtgttcctggaac
tagtaccttccacatctaagttccgtccttagcacccaagggggaaagca
caactttaatcacaccactccaaaggccaagggtggcgaacctgagttca
aggccagcctggtctacagagtgagttctaggctattcaaagtcaacaag
ggtcttcgaaagacagacacaaaacaggctgggtgtggactacttgccag
tactggggaggcaaggaggatgcccaaattgggggggcggggggaaggaa
aaagagcgaatgatgaatgaagataggttggtcagtggcctatccatgta
tacaaatctacattcgcgtgcacacacacacacacacacacctgtagaat
catgaaaaagctagaccatgttgtgctttttttttccctcttttttttat
tactgttaaatctcaaaccctaggtgagacaaacggctgtggtgactaac
atcaaagtggacctggccatgaggttctcccagaatccctcagggtatga
caggcatgccctgctccctaccctaaacttctccagtccaagggctgggc
tgcccttcctccagccgcctttccctataataatccagccatttaagcta
tggcagtctcttggtcagtgtcttgggcccaggctgcccctcttaactgg
gactctcctcccctctctcctcccttccccctctctccacatggctcatg
gtcatgttcactccggactgtggtcttccttttttagctacaataaactt
ccttcctccatcatccctaggagcagcccttctataaaagcacagcttat
tacagctgctgccttatgacacccctctaatagacagctaggtgccctgc
atttgactgggccgtactgaccttgacatctagcacagactgtgcaagt
tctggatgcttagggtgaaggggagtgggggggggcgcttaggttgtaag
tcaaacaggatactatttagtgggacggaactgtagctgggaagaggatt
aaaaagtgtcttttgtggggttatcgggaactaattttctggctggccat
tactgtctgtgaactctgattgcctttgttctatcattcaaacatggggc
cttaatcttctttgagtttgttatttgtttaaggtcccaaggacaggcac
ctggagagctcggccttttatcagagagagagctagtttttgtcaatgta
gagatggggaggctatctcaaactagctttgtggctgctcagggtgtttt
cattaagggaggttttttttgttgttgttattggtttttttgttttgttt
tgttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_121903095_121904142
seq2: B6Ng01-120E02.b_45_1093

seq1  GAATTCCTTATTGGAGACGACAGAGGGATCGTGGCCAGCAGGCTGTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATTGGAGACGACAGAGGGATCGTGGCCAGCAGGCTGTGTGA  50

seq1  GCCAGCACAGGACATTCAATCCCAGTGCTAGCTGGGAAAACTGGCAGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCACAGGACATTCAATCCCAGTGCTAGCTGGGAAAACTGGCAGGCT  100

seq1  GGTCTCTGAGTTGGAAGCCAAACCTCATCCATATACTGTGTTCCTGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTGAGTTGGAAGCCAAACCTCATCCATATACTGTGTTCCTGGAAC  150

seq1  TAGTACCTTCCACATCTAAGTTCCGTCCTTAGCACCCAAGGGGGAAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACCTTCCACATCTAAGTTCCGTCCTTAGCACCCAAGGGGGAAAGCA  200

seq1  CAACTTTAATCACACCACTCCAAAGGCCAAGGGTGGCGAACCTGAGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTAATCACACCACTCCAAAGGCCAAGGGTGGCGAACCTGAGTTCA  250

seq1  AGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGCTATTCAAAGTCAACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGCTATTCAAAGTCAACAAG  300

seq1  GGTCTTCGAAAGACAGACACAAAACAGGCTGGGTGTGGACTACTTGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCGAAAGACAGACACAAAACAGGCTGGGTGTGGACTACTTGCCAG  350

seq1  TACTGGGGAGGCAAGGAGGATGCCCAAATTGGGGGGGCGGGGGGAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGGAGGCAAGGAGGATGCCCAAATTGGGGGGGCGGGGGGAAGGAA  400

seq1  AAAGAGCGAATGATGAATGAAGATAGGTTGGTCAGTGGCCTATCCATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCGAATGATGAATGAAGATAGGTTGGTCAGTGGCCTATCCATGTA  450

seq1  TACAAATCTACATTCGCGTGCACACACACACACACACACACCTGTAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATCTACATTCGCGTGCACACACACACACACACACACCTGTAGAAT  500

seq1  CATGAAAAAGCTAGACCATGTTGTGCTTTTTTTTTCCCTCTTTTTTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAAAGCTAGACCATGTTGTGCTTTTTTTTTCCCTCTTTTTTTTAT  550

seq1  TACTGTTAAATCTCAAACCCTAGGTGAGACAAACGGCTGTGGTGACTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTAAATCTCAAACCCTAGGTGAGACAAACGGCTGTGGTGACTAAC  600

seq1  ATCAAAGTGGACCTGGCCATGAGGTTCTCCCAGAATCCCTCAGGGTATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGTGGACCTGGCCATGAGGTTCTCCCAGAATCCCTCAGGGTATGA  650

seq1  CAGGCATGCCCTGCTCCCTACCCTAAACTTCTCCAGTCCAAGGGCTGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATGCCCTGCTCCCTACCCTAAACTTCTCCAGTCCAAGGGCTGGGC  700

seq1  TGCCCTTCCTCCAGCCGCCTTTCCCTATAATAATCCAGCCATTTAAGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTCCTCCAGCCGCCTTTCCCTATAATAATCCAGCCATTTAAGCTA  750

seq1  TGGCAGTCTCTTGGTCAGTGTCTT-GGCCCAGGCTGCCCCTCTTAACTGG  799
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGGCAGTCTCTTGGTCAGTGTCTTGGGCCCAGGCTGCCCCTCTTAACTGG  800

seq1  GACTCTCCTCCCCTCTCTCCTCCCTTCCCCCTCTCTCCACATGGCTCATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCCTCCCCTCTCTCCTCCCTTCCCCCTCTCTCCACATGGCTCATG  850

seq1  GTCATGTTCACTCCGGACTGTGGTCTTCCTTTTTTAGCTACAATAAACTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTTCACTCCGGACTGTGGTCTTCCTTTTTTAGCTACAATAAACTT  900

seq1  CC-TCCTCCATCATCCCTAGGAGCAGCCCTTCTATAAAAAGCACAGCTTA  948
      || |||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCTTCCTCCATCATCCCTAGGAGCAGCCCTTCTAT-AAAAGCACAGCTTA  949

seq1  TTACAGCTGCTGCCTTATGACCACCCCTCTAATAGACAGCTAGGTGCCCT  998
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTACAGCTGCTGCCTTATGA-CACCCCTCTAATAGACAGCTAGGTGCCCT  998

seq1  GCATTTGACT-GGCCGTACTGACCTTGACATCTAGCACAGACTGTGCAAG  1047
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGACTGGGCCGTACTGACCTTGACATCTAGCACAGACTGTGCAAG  1048

seq1  T  1048
      |
seq2  T  1049

seq1: chr5_122062680_122063092
seq2: B6Ng01-120E02.g_65_477 (reverse)

seq1  CAAAACAAAACAAAACAAAAAAACCAATAACAACAACAAAAAAAACCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACAAAACAAAAAAACCAATAACAACAACAAAAAAAACCTCC  50

seq1  CTTAATGAAAACACCCTGAGCAGCCACAAAGCTAGTTTGAGATAGCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGAAAACACCCTGAGCAGCCACAAAGCTAGTTTGAGATAGCCTCC  100

seq1  CCATCTCTACATTGACAAAAACTAGCTCTCTCTCTGATAAAAGGCCGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTACATTGACAAAAACTAGCTCTCTCTCTGATAAAAGGCCGAGC  150

seq1  TCTCCAGGTGCCTGTCCTTGGGACCTTAAACAAATAACAAACTCAAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGTGCCTGTCCTTGGGACCTTAAACAAATAACAAACTCAAAGAA  200

seq1  GATTAAGGCCCCATGTTTGAATGATAGAACAAAGGCAATCAGAGTTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGGCCCCATGTTTGAATGATAGAACAAAGGCAATCAGAGTTCACA  250

seq1  GACAGTAATGGCCAGCCAGAAAATTAGTTCCCGATAACCCCACAAAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAATGGCCAGCCAGAAAATTAGTTCCCGATAACCCCACAAAAGAC  300

seq1  ACTTTTTAATCCTCTTCCCAGCTACAGTTCCGTCCCACTAAATAGTATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTAATCCTCTTCCCAGCTACAGTTCCGTCCCACTAAATAGTATCC  350

seq1  TGTTTGACTTACAACCTAAGCGCCCCCCCCCACTCCCCTTCACCCTAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGACTTACAACCTAAGCGCCCCCCCCCACTCCCCTTCACCCTAAGC  400

seq1  ATCCAGAGAATTC  413
      |||||||||||||
seq2  ATCCAGAGAATTC  413