BAC Information

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BAC

Clone NameB6Ng01-120P16
Chromosome5 (Build37)
Map Location 40,225,663 - 40,333,493
singlet/doubletdoublet
Overlap genenone
Upstream geneClnk, LOC384174, Hs3st1, EG665839
Downstream geneLOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120P16.bB6Ng01-120P16.g
ACCDH924781DH924782
length1,1431,009
definitionDH924781|Mus musculus domesticus DNA, BAC clone: B6Ng01-120P16, 5' end.DH924782|Mus musculus domesticus DNA, BAC clone: B6Ng01-120P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,225,663 - 40,226,811)(40,332,396 - 40,333,493)
sequence
gaattcagtatgggcctgctgaaagttcagtttattaacctatttggcaa
tgggtcagtacacttaattaacttcaacatgaaaagaggtattcatttga
gatagtctttaaatgagcacctgttgtaggcccagacctctatttaggaa
catttttaacttcaaatgtctctgcctgagggacaccagctgggagcact
ttacactcccatgcaggaattttagaatgatgacatgcagtctatagagg
tggagctgtgttctagctgcatgatcctttttctctaaagtatggggaaa
gggcttttaaagaaaactttaattaatattgtcttgatgatacacactct
tccctagaactcaaggtgttaaaatctatttctcaaaaaatttctctgtt
ctttcttcagttaggggattctacacacttcgctctgtttcattggaact
tgacaatattgtcagcaaataagaagcagatattgtgagctatttttttc
aaaatgactatgaagtctagtgtactaggtcacactaaatgttttttggc
aatgaagaaagaaactgatgtgaaaatttgatggaatgaagcaacataaa
gaacttctaagtacaccttatttgatttttcaaaatgtttctaattctaa
ctaaatattgttataacaagaagaaatatgggtggctatatggctcctag
atattgacaataaccaaacactggtctatactgtaaattaactctagaca
acatttagatgctgtgaagtccaccacactttaatagcttatatcttcat
ctttgtgtatgttagtgtgtggctgtgcatgtttggttgtgtgtatagag
tctagaagacatcctcaggaggcattcttcctctcacctgtctctgcttc
ctgtgtactgggatgaggagtcttcaactccatattagatttttttttaa
tgtaggttctacattttcactggtgaccttgtacttgtgtggcaaatatc
atagcccctgagatttcttctccagccactgtatcttttcttgcattatg
ctatttttcatctgtgggaagtaaatgctattactgttaccgtggaatca
tctattaatgtgtttcccttgagcatttgttcttgtttcactg
gaattcccgagtttgcaaacaagagggtttctgattttgtgccttttaag
gtgctctttttcttctggcttattttgccaattccaacgtgttagtttta
attttatttcatgatgttttatcttggttctattatcccttagaagcctg
tgagatttttttttttaaacgagagacagaaagtgagtatattcagattt
gagggacgatgaggaggagaggggttgaaactgctatcaggatatgttat
atgaggaaaaaaatatattatcaaaaaagggaagcagccaacaggagaaa
gggagaagtagacaagccagaggagggactgtctacttaatgaaggtggc
aggaattcatttattgcttctttgagaatagtaagtaaatgtcctgccag
ttaggaaaaaaaaaaaaaaaaagcaaaagtccccagtctcatgctggaga
aaaacccagtcatttgattcagaatataatgatgcccctaccatgtcggg
actgcttcagtgactaattgtcctgctcttgtaagttgtgagcagaaaat
ctgcaccctacatctctccttgagagattctgattttattcagtgatgct
tggagtctgctttaaccttcttggcatccctaaagattttctcatctgat
agattcatttaactgtgtgttgtgagttagcagggtcatttgggagagtc
cttcatagagtacctagtggaacctaagtcttcctgagaggttcccagga
aactggataacagcatgagtacagctttgaaactaaagaccatagctcga
tgtctgataaatgccctccagtgagttaagtcatctctatctatatgtta
gtacatttcatgtgctataatgttactgggaggagcagtactttttcgga
agaagaagaaggaagatgaagaagaagagagagtagaggaagagaagaag
aataagagttaccatgttgacgttaagtgcataacattccatcactgata
taggtgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_40225663_40226811
seq2: B6Ng01-120P16.b_49_1191

seq1  GAATTCAGTATGGGCCTGCTGAAAGTTCAGTTTATTAACCTATTTGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATGGGCCTGCTGAAAGTTCAGTTTATTAACCTATTTGGCAA  50

seq1  TGGGTCAGTACACTTAATTAACTTCAACATGAAAAGAGGTATTCATTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCAGTACACTTAATTAACTTCAACATGAAAAGAGGTATTCATTTGA  100

seq1  GATAGTCTTTAAATGAGCACCTGTTGTAGGCCCAGACCTCTATTTAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTCTTTAAATGAGCACCTGTTGTAGGCCCAGACCTCTATTTAGGAA  150

seq1  CATTTTTAACTTCAAATGTCTCTGCCTGAGGGACACCAGCTGGGAGCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAACTTCAAATGTCTCTGCCTGAGGGACACCAGCTGGGAGCACT  200

seq1  TTACACTCCCATGCAGGAATTTTAGAATGATGACATGCAGTCTATAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTCCCATGCAGGAATTTTAGAATGATGACATGCAGTCTATAGAGG  250

seq1  TGGAGCTGTGTTCTAGCTGCATGATCCTTTTTCTCTAAAGTATGGGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTGTGTTCTAGCTGCATGATCCTTTTTCTCTAAAGTATGGGGAAA  300

seq1  GGGCTTTTAAAGAAAACTTTAATTAATATTGTCTTGATGATACACACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTTAAAGAAAACTTTAATTAATATTGTCTTGATGATACACACTCT  350

seq1  TCCCTAGAACTCAAGGTGTTAAAATCTATTTCTCAAAAAATTTCTCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGAACTCAAGGTGTTAAAATCTATTTCTCAAAAAATTTCTCTGTT  400

seq1  CTTTCTTCAGTTAGGGGATTCTACACACTTCGCTCTGTTTCATTGGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCAGTTAGGGGATTCTACACACTTCGCTCTGTTTCATTGGAACT  450

seq1  TGACAATATTGTCAGCAAATAAGAAGCAGATATTGTGAGCTATTTTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATATTGTCAGCAAATAAGAAGCAGATATTGTGAGCTATTTTTTTC  500

seq1  AAAATGACTATGAAGTCTAGTGTACTAGGTCACACTAAATGTTTTTTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACTATGAAGTCTAGTGTACTAGGTCACACTAAATGTTTTTTGGC  550

seq1  AATGAAGAAAGAAACTGATGTGAAAATTTGATGGAATGAAGCAACATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGAAAGAAACTGATGTGAAAATTTGATGGAATGAAGCAACATAAA  600

seq1  GAACTTCTAAGTACACCTTATTTGATTTTTCAAAATGTTTCTAATTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCTAAGTACACCTTATTTGATTTTTCAAAATGTTTCTAATTCTAA  650

seq1  CTAAATATTGTTATAACAAGAAGAAATATGGGTGGCTATATGGCTCCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATATTGTTATAACAAGAAGAAATATGGGTGGCTATATGGCTCCTAG  700

seq1  ATATTGACAATAACCAAACACTGGTCTATACTGTAAATTAACTCTAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGACAATAACCAAACACTGGTCTATACTGTAAATTAACTCTAGACA  750

seq1  ACATTTAGATGCTGTGAAGTCCACCACACTTTAATAGCTTATATCTTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAGATGCTGTGAAGTCCACCACACTTTAATAGCTTATATCTTCAT  800

seq1  CTTTGTGTATGTTAGTGTGTGGCTGTGCATGTTTGGTTGTGTGTATAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTATGTTAGTGTGTGGCTGTGCATGTTTGGTTGTGTGTATAGAG  850

seq1  TCTAGAAGACATCCTCAGGAGGCATTCTTCCTCTCACCTGTCTCTGCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAGACATCCTCAGGAGGCATTCTTCCTCTCACCTGTCTCTGCTTC  900

seq1  CTGTGTACTGGGATGAGGAGTCTTCAACTCCATATTAGATTTTTTTTTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTACTGGGATGAGGAGTCTTCAACTCCATATTAGATTTTTTTTTAA  950

seq1  TGTAGGTTCTACATTTTCACTGGTGACCTTGTACTTGTGTGGCAAATATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTTCTACATTTTCACTGGTGACCTTGTACTTGTGTGGCAAATATC  1000

seq1  ATAGCCCCTGAGATATC-TCTCCAGCCACTGTATCTTTTCTTGCAATATG  1049
      |||||||||||||| || ||||||||||||||||||||||||||| ||||
seq2  ATAGCCCCTGAGATTTCTTCTCCAGCCACTGTATCTTTTCTTGCATTATG  1050

seq1  CTATTTTTCATCTTGTTGGAAGTAAATGCTATTACTTGTACCGTGGATTC  1099
      |||||||||||| ||| |||||||||||||||||||  ||||||||| ||
seq2  CTATTTTTCATC-TGTGGGAAGTAAATGCTATTACTGTTACCGTGGAATC  1099

seq1  ATTCTATTAATGTGTTTTCCCTTGGAGCATTTTGTTCTTGTTTTTCACTG  1149
      | |||||||||||| |||||||| ||||| ||||||||||  ||||||||
seq2  A-TCTATTAATGTG-TTTCCCTT-GAGCA-TTTGTTCTTG--TTTCACTG  1143

seq1: chr5_40332396_40333493
seq2: B6Ng01-120P16.g_66_1074 (reverse)

seq1  CCTCACCTTATCAGTGATGGAAACCCTCACCAGATCAGATTGGTGAGGAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACCCTCACC-ATATCAGTTGATGGAAATGTTATGCACTTTAACGGTCAAA  99
        ||||||| ||||||| |||||| |||||||||||| ||||| ||| ||
seq2  --CCTCACCTATATCAG-TGATGG-AATGTTATGCAC-TTAAC-GTC-AA  43

seq1  CATGGGTTAAACCTCTTCCTTTTTTCTTTCTTTCTTTCTTTCTTTCTTTC  149
      |||||  |||  |||||                  |||||  | |||| |
seq2  CATGG--TAA--CTCTT-----------------ATTCTTCTTCTCTTCC  72

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTG  199
      |    | || ||| |  |||||  |    ||| |||||   ||||| |  
seq2  T---CTACTCTCTCTTCTTCTTCAT---CTTCCTTCTT--CTTCTTCC--  112

seq1  TATAAAGTACTGCTCCT-CCAGTAACATTATAGCAACATGAAATGTACTA  248
       | |||||||||||||| |||||||||||||||| |||||||||||||||
seq2  GAAAAAGTACTGCTCCTCCCAGTAACATTATAGC-ACATGAAATGTACTA  161

seq1  ACATATTAAGATAGAGATGACTTAACTCACTGGAGGGCATTTATCAGACA  298
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAT--AGATAGAGATGACTTAACTCACTGGAGGGCATTTATCAGACA  209

seq1  TCGAGCTATGGTCTTTAGTTTCAAAGCTGTACTCATGCTGTTATCCAGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGCTATGGTCTTTAGTTTCAAAGCTGTACTCATGCTGTTATCCAGTT  259

seq1  TCCTGGGAACCTCTCAGGAAGACTTAGGTTCCACTAGGTACTCTATGAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGAACCTCTCAGGAAGACTTAGGTTCCACTAGGTACTCTATGAAG  309

seq1  GACTCTCCCAAATGACCCTGCTAACTCACAACACACAGTTAAATGAATCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCCCAAATGACCCTGCTAACTCACAACACACAGTTAAATGAATCT  359

seq1  ATCAGATGAGAAAATCTTTAGGGATGCCAAGAAGGTTAAAGCAGACTCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATGAGAAAATCTTTAGGGATGCCAAGAAGGTTAAAGCAGACTCCA  409

seq1  AGCATCACTGAATAAAATCAGAATCTCTCAAGGAGAGATGTAGGGTGCAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCACTGAATAAAATCAGAATCTCTCAAGGAGAGATGTAGGGTGCAG  459

seq1  ATTTTCTGCTCACAACTTACAAGAGCAGGACAATTAGTCACTGAAGCAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGCTCACAACTTACAAGAGCAGGACAATTAGTCACTGAAGCAGT  509

seq1  CCCGACATGGTAGGGGCATCATTATATTCTGAATCAAATGACTGGGTTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGACATGGTAGGGGCATCATTATATTCTGAATCAAATGACTGGGTTTT  559

seq1  TCTCCAGCATGAGACTGGGGACTTTTGCTTTTTTTTTTTTTTTTTCCTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCATGAGACTGGGGACTTTTGCTTTTTTTTTTTTTTTTTCCTAA  609

seq1  CTGGCAGGACATTTACTTACTATTCTCAAAGAAGCAATAAATGAATTCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGGACATTTACTTACTATTCTCAAAGAAGCAATAAATGAATTCCT  659

seq1  GCCACCTTCATTAAGTAGACAGTCCCTCCTCTGGCTTGTCTACTTCTCCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTTCATTAAGTAGACAGTCCCTCCTCTGGCTTGTCTACTTCTCCC  709

seq1  TTTCTCCTGTTGGCTGCTTCCCTTTTTTGATAATATATTTTTTTCCTCAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTGTTGGCTGCTTCCCTTTTTTGATAATATATTTTTTTCCTCAT  759

seq1  ATAACATATCCTGATAGCAGTTTCAACCCCTCTCCTCCTCATCGTCCCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATATCCTGATAGCAGTTTCAACCCCTCTCCTCCTCATCGTCCCTC  809

seq1  AAATCTGAATATACTCACTTTCTGTCTCTCGTTTAAAAAAAAAAATCTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGAATATACTCACTTTCTGTCTCTCGTTTAAAAAAAAAAATCTCA  859

seq1  CAGGCTTCTAAGGGATAATAGAACCAAGATAAAACATCATGAAATAAAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTCTAAGGGATAATAGAACCAAGATAAAACATCATGAAATAAAAT  909

seq1  TAAAACTAACACGTTGGAATTGGCAAAATAAGCCAGAAGAAAAAGAGCAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTAACACGTTGGAATTGGCAAAATAAGCCAGAAGAAAAAGAGCAC  959

seq1  CTTAAAAGGCACAAAATCAGAAACCCTCTTGTTTGCAAACTCGGGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAGGCACAAAATCAGAAACCCTCTTGTTTGCAAACTCGGGAATTC  1009