BAC Information

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BAC

Clone NameB6Ng01-121D15
Chromosome5 (Build37)
Map Location 60,615,408 - 60,764,998
singlet/doubletdoublet
Overlap geneCbfa2t2-ps1
Upstream geneLOC100041425, LOC546866
Downstream geneLOC100041498, LOC666597, EG666610
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121D15.bB6Ng01-121D15.g
ACCDH924963DH924964
length1,1191,158
definitionDH924963|Mus musculus domesticus DNA, BAC clone: B6Ng01-121D15, 5' end.DH924964|Mus musculus domesticus DNA, BAC clone: B6Ng01-121D15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,763,861 - 60,764,998)(60,615,408 - 60,616,581)
sequence
gaattcaacttgctaatgattccataatcaacaaaacagtaacctgtaca
aaaaataatgtaaaatgtatataagcacaattgcctgtacattaacatta
ccaagtcaactcaaataccatctccttaacatttgaaatacccaaaatgt
ttaaggtatataatgtataaattacattatctcccaacaagatacaatta
tctctctgtatatattattgatgtactatatttagtgacaaagtatcctt
cggtctttttaaatgtaatttattttggaaccatatacataaatgatttt
atacataaaaatagaactttaagcttgaacttttggtatgatttttttgt
cattaaatgtacttttctgttgttattttatatggtaaaagaaaactggt
catataaagtagataagctagaagtatatctcattttttcaaaggttaca
ctgtttcgagaatcatttatgtgaattaaagagtgtcttgaagcttagct
aagctgcaggaagatggaggtcttataaacatagtcagctctctactata
ccaactttaccattttccataagcactttctggtaggaagaactctaacc
ccatttgcttgtctgcttctgaggttattcataaaattttaagtaaagat
gaaagtcaacacatttaataggatttttggcatttagaatttttaaaatg
ttaagactgtactgggatagatattgtgaaattactgagtctattggaag
tgatgtgctcattctagctaaagttagcattatctcaaatcatagtaatg
aaaatgttttaagtgtttcagccaaattataatcacacaactgactctct
tacctgcctgactgccttcattcttccttattatatcttatcatttatta
tatatattttatgtgttagaccagtacattgtattctatcctccctatat
attgatcaaacttctgcagtttatcagtatcagaattctgtgtgttttgg
gtcttataaagcagtagagatgcacttatatagcaagaaagtagcagctt
ctattgggtcaactgggaaacgtcaactctccatattattgagatatatc
aacaattctctcttttctt
gaattctttaaagagatctcattggtgtgtttaattggatacccaatggg
catgaattagttttagttgttcttcattgcacttagaaactcctattttg
ttagaacatttttaactgatgaaagcactaacaatggccccacccacagt
aaaatttccctcccttttgaattttccattgtcagtaccattgcaaaatc
tagttccaattgtgccaatttcttctcacttccagacctggcattggtca
gcctttttatttatgtgttttggcattatttctatctaagaaagctggaa
attggcttgtctctcttaaatccttagcttctgaaagatctcataatgaa
cccatccaaaaattcttactttccattattttgattagaaaaattcacag
aaaggggtaaaataaaaccgtgaatgttccttttctcaaggtaaaaatgt
caccagatgagagcatgaggttttattcagctttagtgtcctgaaatgtt
atttagttttgatgccaaattttataaatcatagagacatttatcattcc
attccaatagatcaccagaaacctcagggagaagcttttacattattgcc
aaatttcaatggttgtcttataataaaactttgtccactaagagactttc
ttgtttcctttcacatcagacatgctcatattaactaacacaagctctgt
ctactgaaatatgaaagtgatactgacataaagtgccacagacccttttt
ggtccctgtctgcatagaacgggtctctggtggcaggtggacaaggagtt
ggcgaatggatgacagacagatgcaacacacgagattgtgtagagtctga
gtgcaatttttcaaattgagcatcaaattttttatacaaaagaaaataga
gaagttaggtaacacattagcaaggtacaatgaggttacttgatgctatg
actctacacaaacaaaggatgcaaacataaagactggcagacaggccaat
aaaacaactgagacaagtcagctctatctaagtcgctttattcttagaag
caagtgtggagtctttaacctcagggcaaggctttcatacctaagcatgg
ctcttaatagggagttcattctagcttattcttccatgaatatgcattac
ctctaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_60763861_60764998
seq2: B6Ng01-121D15.b_48_1166 (reverse)

seq1  AAGAAAAGAGAGAATTGTTTGAATATTATCTTCAAAATTATTATGAGAGT  50
      |||||||||||||||||||   ||| |||| |||| | |||   ||||| 
seq2  AAGAAAAGAGAGAATTGTT--GATA-TATC-TCAATAATAT--GGAGAG-  43

seq1  TTGACGTTTCCCAGTTTGACCCAATAGAGGCTGCTACTTTCCTTTGCTAT  100
      |||||||||||||| ||||||||||||| ||||||||||||  |||||||
seq2  TTGACGTTTCCCAG-TTGACCCAATAGAAGCTGCTACTTTC--TTGCTAT  90

seq1  ATAAGTGCATTCTTCCTACTGCCTTTTATAAGACCCCAAAACACACAGAA  150
      ||||||||| |||  |||||||  ||||||||| ||||||||||||||||
seq2  ATAAGTGCA-TCT--CTACTGC--TTTATAAGA-CCCAAAACACACAGAA  134

seq1  TTCTGATAACTGATAAAACTGCAGAAGTTTGATCAATATTATAGGGAGGA  200
      ||||||| |||||| ||||||||||||||||||||||| |||||||||||
seq2  TTCTGAT-ACTGAT-AAACTGCAGAAGTTTGATCAATA-TATAGGGAGGA  181

seq1  TAGAATACAATGTACTGGTCTAACACATAAAATATATATAATAAATGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATACAATGTACTGGTCTAACACATAAAATATATATAATAAATGATA  231

seq1  AGATATAATAAGGAAGAATGAAGGCAGTCAGGCAGGTAAGAGAGTCAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAATAAGGAAGAATGAAGGCAGTCAGGCAGGTAAGAGAGTCAGTT  281

seq1  GTGTGATTATAATTTGGCTGAAACACTTAAAACATTTTCATTACTATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATTATAATTTGGCTGAAACACTTAAAACATTTTCATTACTATGAT  331

seq1  TTGAGATAATGCTAACTTTAGCTAGAATGAGCACATCACTTCCAATAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATAATGCTAACTTTAGCTAGAATGAGCACATCACTTCCAATAGAC  381

seq1  TCAGTAATTTCACAATATCTATCCCAGTACAGTCTTAACATTTTAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAATTTCACAATATCTATCCCAGTACAGTCTTAACATTTTAAAAAT  431

seq1  TCTAAATGCCAAAAATCCTATTAAATGTGTTGACTTTCATCTTTACTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATGCCAAAAATCCTATTAAATGTGTTGACTTTCATCTTTACTTAA  481

seq1  AATTTTATGAATAACCTCAGAAGCAGACAAGCAAATGGGGTTAGAGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATGAATAACCTCAGAAGCAGACAAGCAAATGGGGTTAGAGTTCT  531

seq1  TCCTACCAGAAAGTGCTTATGGAAAATGGTAAAGTTGGTATAGTAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCAGAAAGTGCTTATGGAAAATGGTAAAGTTGGTATAGTAGAGAG  581

seq1  CTGACTATGTTTATAAGACCTCCATCTTCCTGCAGCTTAGCTAAGCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTATGTTTATAAGACCTCCATCTTCCTGCAGCTTAGCTAAGCTTCA  631

seq1  AGACACTCTTTAATTCACATAAATGATTCTCGAAACAGTGTAACCTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTCTTTAATTCACATAAATGATTCTCGAAACAGTGTAACCTTTGA  681

seq1  AAAAATGAGATATACTTCTAGCTTATCTACTTTATATGACCAGTTTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAGATATACTTCTAGCTTATCTACTTTATATGACCAGTTTTCTT  731

seq1  TTACCATATAAAATAACAACAGAAAAGTACATTTAATGACAAAAAAATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATATAAAATAACAACAGAAAAGTACATTTAATGACAAAAAAATCA  781

seq1  TACCAAAAGTTCAAGCTTAAAGTTCTATTTTTATGTATAAAATCATTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAAGTTCAAGCTTAAAGTTCTATTTTTATGTATAAAATCATTTAT  831

seq1  GTATATGGTTCCAAAATAAATTACATTTAAAAAGACCGAAGGATACTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGGTTCCAAAATAAATTACATTTAAAAAGACCGAAGGATACTTTG  881

seq1  TCACTAAATATAGTACATCAATAATATATACAGAGAGATAATTGTATCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAATATAGTACATCAATAATATATACAGAGAGATAATTGTATCTT  931

seq1  GTTGGGAGATAATGTAATTTATACATTATATACCTTAAACATTTTGGGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGAGATAATGTAATTTATACATTATATACCTTAAACATTTTGGGTA  981

seq1  TTTCAAATGTTAAGGAGATGGTATTTGAGTTGACTTGGTAATGTTAATGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATGTTAAGGAGATGGTATTTGAGTTGACTTGGTAATGTTAATGT  1031

seq1  ACAGGCAATTGTGCTTATATACATTTTACATTATTTTTTGTACAGGTTAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAATTGTGCTTATATACATTTTACATTATTTTTTGTACAGGTTAC  1081

seq1  TGTTTTGTTGATTATGGAATCATTAGCAAGTTGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTGATTATGGAATCATTAGCAAGTTGAATTC  1119

seq1: chr5_60615408_60616581
seq2: B6Ng01-121D15.g_67_1224

seq1  GAATTCTTTAAAGAGATCTCATTGGTGTGTTTAATTGGATACCCAATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAGAGATCTCATTGGTGTGTTTAATTGGATACCCAATGGG  50

seq1  CATGAATTAGTTTTAGTTGTTCTTCATTGCACTTAGAAACTCCTATTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATTAGTTTTAGTTGTTCTTCATTGCACTTAGAAACTCCTATTTTG  100

seq1  TTAGAACATTTTTAACTGATGAAAGCACTAACAATGGCCCCACCCACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACATTTTTAACTGATGAAAGCACTAACAATGGCCCCACCCACAGT  150

seq1  AAAATTTCCCTCCCTTTTGAATTTTCCATTGTCAGTACCATTGCAAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCCCTCCCTTTTGAATTTTCCATTGTCAGTACCATTGCAAAATC  200

seq1  TAGTTCCAATTGTGCCAATTTCTTCTCACTTCCAGACCTGGCATTGGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCAATTGTGCCAATTTCTTCTCACTTCCAGACCTGGCATTGGTCA  250

seq1  GCCTTTTTATTTATGTGTTTTGGCATTATTTCTATCTAAGAAAGCTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTTATTTATGTGTTTTGGCATTATTTCTATCTAAGAAAGCTGGAA  300

seq1  ATTGGCTTGTCTCTCTTAAATCCTTAGCTTCTGAAAGATCTCATAATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTTGTCTCTCTTAAATCCTTAGCTTCTGAAAGATCTCATAATGAA  350

seq1  CCCATCCAAAAATTCTTACTTTCCATTATTTTGATTAGAAAAATTCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCAAAAATTCTTACTTTCCATTATTTTGATTAGAAAAATTCACAG  400

seq1  AAAGGGGTAAAATAAAACCGTGAATGTTCCTTTTCTCAAGGTAAAAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGTAAAATAAAACCGTGAATGTTCCTTTTCTCAAGGTAAAAATGT  450

seq1  CACCAGATGAGAGCATGAGGTTTTATTCAGCTTTAGTGTCCTGAAATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGATGAGAGCATGAGGTTTTATTCAGCTTTAGTGTCCTGAAATGTT  500

seq1  ATTTAGTTTTGATGCCAAATTTTATAAATCATAGAGACATTTATCATTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTTTGATGCCAAATTTTATAAATCATAGAGACATTTATCATTCC  550

seq1  ATTCCAATAGATCACCAGAAACCTCAGGGAGAAGCTTTTACATTATTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAATAGATCACCAGAAACCTCAGGGAGAAGCTTTTACATTATTGCC  600

seq1  AAATTTCAATGGTTGTCTTATAATAAAACTTTGTCCACTAAGAGACTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCAATGGTTGTCTTATAATAAAACTTTGTCCACTAAGAGACTTTC  650

seq1  TTGTTTCCTTTCACATCAGACATGCTCATATTAACTAACACAAGCTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCTTTCACATCAGACATGCTCATATTAACTAACACAAGCTCTGT  700

seq1  CTACTGAAATATGAAAGTGATACTGACATAAAGTGCCACAGACCCTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGAAATATGAAAGTGATACTGACATAAAGTGCCACAGACCCTTTTT  750

seq1  GGTCCCTGTCTGCATAGAACGGGTCTCTGGTGGCAGGTGGACAAGGAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTGTCTGCATAGAACGGGTCTCTGGTGGCAGGTGGACAAGGAGTT  800

seq1  GGCGAATGGATGACAGACAGATGCAACACACGAGATTGTGTAGAGTCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAATGGATGACAGACAGATGCAACACACGAGATTGTGTAGAGTCTGA  850

seq1  GTGCAATTTTTCAAATTGAGCATCAAATTTTTTATACAAAAGAAAATAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAATTTTTCAAATTGAGCATCAAATTTTTTATACAAAAGAAAATAGA  900

seq1  GAAGTTAGGTAACACATTAGCAAGGTACAATGAGGTTACTTGATGCTTAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  GAAGTTAGGTAACACATTAGCAAGGTACAATGAGGTTACTTGATGCT--A  948

seq1  TGACTCTTACACAAAACAAAGGAATGCAAACATAAAGACTGGCAGGAACA  1000
      |||||| ||||| ||||||||| ||||||||||||||||||||||  |||
seq2  TGACTC-TACAC-AAACAAAGG-ATGCAAACATAAAGACTGGCAG--ACA  993

seq1  GGGCAATAAAACAACTGAGACAAAGTCAGCTCTATCTAAGGTTCGCTATA  1050
      || |||||||||||||||||| ||||||||||||||||||  ||||| ||
seq2  GGCCAATAAAACAACTGAGAC-AAGTCAGCTCTATCTAAG--TCGCTTTA  1040

seq1  TTCTTAGAAGCCAGGTGTGAGGTCTTTACACTCCCAGGGCAAGGGCTTTC  1100
      |||||||||| || |||||  |||||||  ||  |||||||| |||||||
seq2  TTCTTAGAAG-CAAGTGTGGAGTCTTTAACCT--CAGGGCAA-GGCTTTC  1086

seq1  ATACCTAAGCCATGGCTCTAATTAGGGAGTTCCATTCTAGC-TAATCTTC  1149
      ||||||||| ||||||||| | ||||||||| ||||||||| || |||||
seq2  ATACCTAAG-CATGGCTCTTAATAGGGAGTT-CATTCTAGCTTATTCTTC  1134

seq1  TCATGAATAATGCAATA-CTCTAAAA  1174
       ||||||| ||||| || ||||||||
seq2  -CATGAAT-ATGCATTACCTCTAAAA  1158