BAC Information

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BAC

Clone NameB6Ng01-121E12
Chromosome5 (Build37)
Map Location 118,369,250 - 118,539,714
singlet/doubletdoublet
Overlap geneNos1, Fbxo21, Tesc, Fbxw8
Upstream geneLOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2
Downstream geneHrk, Tmem118, 2410131K14Rik, LOC665162, Thrap2, LOC100039488
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121E12.bB6Ng01-121E12.g
ACCDH925005DH925006
length1,1471,048
definitionDH925005|Mus musculus domesticus DNA, BAC clone: B6Ng01-121E12, 5' end.DH925006|Mus musculus domesticus DNA, BAC clone: B6Ng01-121E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,369,250 - 118,370,414)(118,538,646 - 118,539,714)
sequence
gaattctcaaagagtccagaggtgtgatataataaatataataacaccag
agagaaggttccagaagcaggaccaataaattgaagatccagagagggag
ttggcttcaggagggggctcaaagagaacccacggccgccattcctttgt
cacaggagctacaaggtccgattcaacagcgtctcctcctattctgactc
ccgcaagtcatcaggcgatggaccagacctcagagacaactttgaaagta
ctggaccgctggccaatgtgaggtgagcaagggtgccagggactggggtt
aataaaggctcttagagggtgggggccatctgcacagtggttctttgttc
tggagaattccccctgaggtgttcctcccttcctctgggtcctttccctc
tctaacacacgctacctggtctcccatgtgtgaggacgcttgtacccagc
aacctgtgatgccctctaactccctcccagagcccattactaagtcccgc
ccactgtctgccctgaagggcagtagtccccagatgccactgtcagagcc
actttttcaagtagacacattttatacagagtgaatgtctctgaagacac
acacaccacaccccctaaggtgatctggtgtttctcaatcctgggtgcac
gttagaaccacctggggtgatccactcatggctgcgcacacttgtagtcc
cagcagttgagaaactgaggcaggaggatggcaagttcaaggccagcctg
ggctacatgaggagatcaaacaaaacaaaaccacctgggttggaggggtg
gttttcgatctaccgatgtggtgcataagcctgacttgaagagattctac
agttggtcgagaaccggggctgctgctgccctctcgtctcctaagcctgg
ccaacggcctcgactatgaagtcagatctgaaactactcccgacttcatc
tttcctaagcagagtcacatcccatgagacagtttgggggaggatgtgta
caaagacagtactgggtctacgatatgtgtcagtttagtatctggagaga
taaaaaagatgtgggcttgtctgaaaacagtcagatatgcgacccctttc
ggtcccactatccagaacagactcctccacctggaccggatagatga
gaattcatcagcagtgcttttgtttccgtaacgatttataacagcacact
acctttattaatctctttgctgcctgaatgtgctctcagggtggatggct
agaggcagagctgccgcgggcgaacaccatgctgtcgatgagctcgtgtc
tcataaagggatccggagccccacttagtgctctcagcatcgctctgtgg
agctggacatatttcccaatttagttctgaagctcttggcatttgatggc
agattgtattaagcagcacgcggagtgcatcctaatcagggcaaagggtg
aagtcatcgcaggctggagtgagctgggcagggagggaggctggcttagg
ctgcagcagcttacatcacactagaaagtaattgcccgactctctgagct
aatgactgcccatgtgcagccaggaagagacttgggattggttgcctgca
ctggccacaaggggagcgtctgtctggagccttgggtcagagtgtgctgc
agatgggttgccttctgccctgtctgcccaatcagagcgccatcttttct
tctgttgaggtttctgtgtgtgagagtcgagacttaatacttcacatgca
agacaaacaagcaaaaattgaaagtttgtaaaatattttcgcacgctctc
cagaactctgtgtctcagttccttctttgtccgggcattgacggctgact
cctgaagcctggttttctggaaggaagagggcccagcgttgttagattcc
gtcacatcagtgagcaggatcccgtgggtcgggcatgcttccctctcctg
ttcagcctctgctctgtcagagtaaccaggtgcagaggttctctcttggg
aggctgggggaactccagagtgctgaaaatctcaaagataactgaaaatg
agaatgagattcgagatgttttgtgcagtgttgctctttttttttttttt
ttagattatttattatacattgtagtacactgagctgtctcagacacacc
agagagggagtcagatcttgtacggtgtgtgagcaccatgtggtgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_118369250_118370414
seq2: B6Ng01-121E12.b_46_1192

seq1  GAATTCTCAAAGAGTCCAGAGGTGTGATATAATAAATATAATAACACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAGAGTCCAGAGGTGTGATATAATAAATATAATAACACCAG  50

seq1  AGAGAAGGTTCCAGAAGCAGGACCAATAAATTGAAGATCCAGAGAGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGTTCCAGAAGCAGGACCAATAAATTGAAGATCCAGAGAGGGAG  100

seq1  TTGGCTTCAGGAGGGGGCTCAAAGAGAACCCACGGCCGCCATTCCTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTCAGGAGGGGGCTCAAAGAGAACCCACGGCCGCCATTCCTTTGT  150

seq1  CACAGGAGCTACAAGGTCCGATTCAACAGCGTCTCCTCCTATTCTGACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGCTACAAGGTCCGATTCAACAGCGTCTCCTCCTATTCTGACTC  200

seq1  CCGCAAGTCATCAGGCGATGGACCAGACCTCAGAGACAACTTTGAAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAAGTCATCAGGCGATGGACCAGACCTCAGAGACAACTTTGAAAGTA  250

seq1  CTGGACCGCTGGCCAATGTGAGGTGAGCAAGGGTGCCAGGGACTGGGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCGCTGGCCAATGTGAGGTGAGCAAGGGTGCCAGGGACTGGGGTT  300

seq1  AATAAAGGCTCTTAGAGGGTGGGGGCCATCTGCACAGTGGTTCTTTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGGCTCTTAGAGGGTGGGGGCCATCTGCACAGTGGTTCTTTGTTC  350

seq1  TGGAGAATTCCCCCTGAGGTGTTCCTCCCTTCCTCTGGGTCCTTTCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAATTCCCCCTGAGGTGTTCCTCCCTTCCTCTGGGTCCTTTCCCTC  400

seq1  TCTAACACACGCTACCTGGTCTCCCATGTGTGAGGACGCTTGTACCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACACACGCTACCTGGTCTCCCATGTGTGAGGACGCTTGTACCCAGC  450

seq1  AACCTGTGATGCCCTCTAACTCCCTCCCAGAGCCCATTACTAAGTCCCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTGATGCCCTCTAACTCCCTCCCAGAGCCCATTACTAAGTCCCGC  500

seq1  CCACTGTCTGCCCTGAAGGGCAGTAGTCCCCAGATGCCACTGTCAGAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTCTGCCCTGAAGGGCAGTAGTCCCCAGATGCCACTGTCAGAGCC  550

seq1  ACTTTTTCAAGTAGACACATTTTATACAGAGTGAATGTCTCTGAAGACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTCAAGTAGACACATTTTATACAGAGTGAATGTCTCTGAAGACAC  600

seq1  ACACACCACACCCCCTAAGGTGATCTGGTGTTTCTCAATCCTGGGTGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCACACCCCCTAAGGTGATCTGGTGTTTCTCAATCCTGGGTGCAC  650

seq1  GTTAGAACCACCTGGGGTGATCCACTCATGGCTGCGCACACTTGTAGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAACCACCTGGGGTGATCCACTCATGGCTGCGCACACTTGTAGTCC  700

seq1  CAGCAGTTGAGAAACTGAGGCAGGAGGATGGCAAGTTCAAGGCCAGCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTGAGAAACTGAGGCAGGAGGATGGCAAGTTCAAGGCCAGCCTG  750

seq1  GGCTACATGAGGAGATCAAACAAAACAAAACCACCTGGGTTGGAGGGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACATGAGGAGATCAAACAAAACAAAACCACCTGGGTTGGAGGGGTG  800

seq1  GTTTTCGATCTACCGATGTGGTGCATAAGCCTGACTTGAAGAGATTCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCGATCTACCGATGTGGTGCATAAGCCTGACTTGAAGAGATTCTAC  850

seq1  AGTTGGTCGAGAACCGGGGCTGCTGCTGCCCTCTCGTCTCCTAAGCCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTCGAGAACCGGGGCTGCTGCTGCCCTCTCGTCTCCTAAGCCTGG  900

seq1  CCAACGGCCTCGACTATGAAGTCAGATCTGAAAACTACTCCCCGACTTCA  950
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  CCAACGGCCTCGACTATGAAGTCAGATCTG-AAACTACT-CCCGACTTCA  948

seq1  TCTTTTCCTAAGCAGAGTCACATCCCATGAGACAGTTTGGGGGAGGATGT  1000
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-TTTCCTAAGCAGAGTCACATCCCATGAGACAGTTTGGGGGAGGATGT  997

seq1  GTAACAAAGACAAGTACCTGGGTCTACGATATGTGTTCAGTTTAGTATCT  1050
      || |||||||| |||| |||||||||||||||||| ||||||||||||||
seq2  GT-ACAAAGAC-AGTA-CTGGGTCTACGATATGTG-TCAGTTTAGTATCT  1043

seq1  GGAGAGATAAAATAAGGATGTGGGGCCTTGTCCTGGATAACAGTCAAGAT  1100
      |||||||||||  || ||||||||  ||||||   || ||||||| ||||
seq2  GGAGAGATAAA--AAAGATGTGGG--CTTGTC--TGAAAACAGTC-AGAT  1086

seq1  ATGGCCGACACCCTTTCGGT-CCACCATCCAGGAACAGACTTCTCCCACC  1149
      |||  |||| |||||||||| |||| ||||| ||||||||| || |||||
seq2  ATG--CGAC-CCCTTTCGGTCCCACTATCCA-GAACAGACTCCT-CCACC  1131

seq1  TTGACCAGATAGATGA  1165
      | |||| |||||||||
seq2  TGGACCGGATAGATGA  1147

seq1: chr5_118538646_118539714
seq2: B6Ng01-121E12.g_65_1112 (reverse)

seq1  CAGCAACCACATGGTGGCTCACAACCACCCGTAACAAGATCTGACTCCCT  50
      |||| |||||||||| |||||||  || |||| |||||||||||||||||
seq2  CAGC-ACCACATGGT-GCTCACA--CA-CCGT-ACAAGATCTGACTCCCT  44

seq1  CTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATGTAATAATAAA  100
      | ||||||||||||| |||||||| |||||||||   |||| ||||||||
seq2  C-TCTGGTGTGTCTG-AGACAGCT-CAGTGTACTACAATGT-ATAATAAA  90

seq1  TAAATCTTTAAAAAAAAAAAAAAAAAGAGCAACACCTGCACAAAACAATC  150
      | |||||   |||||||||||||||||||||||| ||||||||||| |||
seq2  T-AATCT---AAAAAAAAAAAAAAAAGAGCAACA-CTGCACAAAAC-ATC  134

seq1  TCGAATCTTCATTTCTCATTTTTCAGTTATCTTTGAGATTTTCAGCACTC  200
      ||||||| ||| |||||| |||||||||||||||||||||||||||||||
seq2  TCGAATC-TCA-TTCTCA-TTTTCAGTTATCTTTGAGATTTTCAGCACTC  181

seq1  TGGAGTTCCCCCCAGCCTCCCAAGAGAGAACCTCTGCACCCTGGTTACTC  250
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  TGGAGTT-CCCCCAGCCTCCCAAGAGAGAACCTCTGCA-CCTGGTTACTC  229

seq1  TGACAGAGCAGAGGCTGAACAGGAGAGGGAAGCATGCCCGACCCACGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAGCAGAGGCTGAACAGGAGAGGGAAGCATGCCCGACCCACGGGA  279

seq1  TCCTGCTCACTGATGTGACGGAATCTAACAACGCTGGGCCCTCTTCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCACTGATGTGACGGAATCTAACAACGCTGGGCCCTCTTCCTTC  329

seq1  CAGAAAACCAGGCTTCAGGAGTCAGCCGTCAATGCCCGGACAAAGAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACCAGGCTTCAGGAGTCAGCCGTCAATGCCCGGACAAAGAAGGA  379

seq1  ACTGAGACACAGAGTTCTGGAGAGCGTGCGAAAATATTTTACAAACTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGACACAGAGTTCTGGAGAGCGTGCGAAAATATTTTACAAACTTTC  429

seq1  AATTTTTGCTTGTTTGTCTTGCATGTGAAGTATTAAGTCTCGACTCTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGCTTGTTTGTCTTGCATGTGAAGTATTAAGTCTCGACTCTCAC  479

seq1  ACACAGAAACCTCAACAGAAGAAAAGATGGCGCTCTGATTGGGCAGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAACCTCAACAGAAGAAAAGATGGCGCTCTGATTGGGCAGACAG  529

seq1  GGCAGAAGGCAACCCATCTGCAGCACACTCTGACCCAAGGCTCCAGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGGCAACCCATCTGCAGCACACTCTGACCCAAGGCTCCAGACAG  579

seq1  ACGCTCCCCTTGTGGCCAGTGCAGGCAACCAATCCCAAGTCTCTTCCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCCCCTTGTGGCCAGTGCAGGCAACCAATCCCAAGTCTCTTCCTGG  629

seq1  CTGCACATGGGCAGTCATTAGCTCAGAGAGTCGGGCAATTACTTTCTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACATGGGCAGTCATTAGCTCAGAGAGTCGGGCAATTACTTTCTAGT  679

seq1  GTGATGTAAGCTGCTGCAGCCTAAGCCAGCCTCCCTCCCTGCCCAGCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTAAGCTGCTGCAGCCTAAGCCAGCCTCCCTCCCTGCCCAGCTCA  729

seq1  CTCCAGCCTGCGATGACTTCACCCTTTGCCCTGATTAGGATGCACTCCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCTGCGATGACTTCACCCTTTGCCCTGATTAGGATGCACTCCGC  779

seq1  GTGCTGCTTAATACAATCTGCCATCAAATGCCAAGAGCTTCAGAACTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCTTAATACAATCTGCCATCAAATGCCAAGAGCTTCAGAACTAAA  829

seq1  TTGGGAAATATGTCCAGCTCCACAGAGCGATGCTGAGAGCACTAAGTGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAATATGTCCAGCTCCACAGAGCGATGCTGAGAGCACTAAGTGGG  879

seq1  GCTCCGGATCCCTTTATGAGACACGAGCTCATCGACAGCATGGTGTTCGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGGATCCCTTTATGAGACACGAGCTCATCGACAGCATGGTGTTCGC  929

seq1  CCGCGGCAGCTCTGCCTCTAGCCATCCACCCTGAGAGCACATTCAGGCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGGCAGCTCTGCCTCTAGCCATCCACCCTGAGAGCACATTCAGGCAG  979

seq1  CAAAGAGATTAATAAAGGTAGTGTGCTGTTATAAATCGTTACGGAAACAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGATTAATAAAGGTAGTGTGCTGTTATAAATCGTTACGGAAACAA  1029

seq1  AAGCACTGCTGATGAATTC  1069
      |||||||||||||||||||
seq2  AAGCACTGCTGATGAATTC  1048