BAC Information

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BAC

Clone NameB6Ng01-121H11
Chromosome5 (Build37)
Map Location 83,343,281 - 83,512,981
singlet/doubletdoublet
Overlap geneLOC100039434
Upstream geneEG433912
Downstream geneSrd5a2l2, LOC100039608, LOC231368, Epha5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121H11.bB6Ng01-121H11.g
ACCDH925142DH925143
length1,1901,109
definitionDH925142|Mus musculus domesticus DNA, BAC clone: B6Ng01-121H11, 5' end.DH925143|Mus musculus domesticus DNA, BAC clone: B6Ng01-121H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,511,779 - 83,512,981)(83,343,281 - 83,344,285)
sequence
gaattcagaagggaagaatgaagcagaatgacacagatatccactggtaa
gggcagaaacaacaggcccactaatgcaaggacaatgaagtttagccatg
actacaagcttcttctttctctactttcattccattggatgcctcccttc
agggaatgtttatcacccttagtttctttcctgtaaattatctccagaaa
ctctctagcaggcatagctaacagttagcgttattaaccttctattcatc
tttcaaaagtatcaaattgacagttaagaatgattatcacaatttttgtt
agtagattttctattattctaataaaattgaattttgcttcatttaacta
taaaatactaattaatattcattcaaaaagcagatatattaagccatgat
gaatagtacatttatttgtaaattctcctttgttgatggcaatcatattg
gaaatcaaatcacctggttattttagtaagtgtatattatagtaaaatat
ccatgattttctttaagtttgttagaagctctttaaaatcattaacatat
cttctgaagatattttctaaagtattatcaaatgtataccaagacagttt
atctccaggtcattatgacatttcatgttaatacatttttctgagtgata
gagttactaataagaatggaattctgcagtcatccactcttatcttcttt
atctttctgtatatagtgttgagtatcttcagcaataacggtttggtagt
tataaattgttttaaattatgcttccttgaaatgtcattgtttcttcatc
aagtggaacataactttgctagatacaataatctacattggcagctgttt
gtgttcagggcttataatatattcattttgtgcctttctggctgccaagt
gttccttgagtgatctgatactgttctgatgaacctgccccttgtgagtt
ggcatttttatcttttatcttttaatgttgtttgttttctttatggttgg
ggcattttgaatatgttctgtcttgctaagatctccagtaatatctattt
ggatttcaaatgcctgttttgtagtcatccctcctatagctttgacacca
ttttctgacaaaatgtcactgacaagtttaacctttggatgaattctggt
ttcttctctttggctcaggactcccactctgatttaagcc
gaattctcattttggctctctaccccatttttaattgggttatctgggtt
attggtgtttaacttttttagattttgtttttgtttttgttttacaaatg
tggatattatctttctgttagatgtagggttggtgaagatctgcttctaa
tctgtaggctgctattttgttctattgacagtgtcctttgccttacagac
acttgcagtttcatgaggtcccatttatcagttgttgatcttagagcctg
agcaattggtgctctgttccagaaagaacttcctgtaccaattagccttc
attgctattttccactttttctcctgtgatacttaggctttctcatttta
tgttgaagtctttaacccacttgggcttgagtttttgcacaggatgataa
atatgaatctaatggcttccttcttcatgtagaagtccatttagaccagt
accattttgttgaaaatgctttcattttttccattatatggttttgactt
ctttatcaaaaatccaagtgttcatatatgtgtgagtttatttctggaaa
ttgattgattccattgatagatctgtctgtatccattccaatcccatgca
attattattactattctttttgtctgtttgtctgtttttgtttttcgaga
cagggtttctctgtgtagccctggctgtcctggaacccactctgtagacc
aggctggcctcgaactcagaaatctgcctgcttttgctttccaggtgctg
ggattaaggcgtgcatgtgccacccttgaactattttttagcactgtttt
cattgtgtctcataaatttgggacagaatgttcaccttcattttcactga
attctagaaattactaatttctttctcatttcatccctggtccagagatc
attgagtagagagtcttcagtttctatgagtgtgtagacattctggtgat
tttgtgttctacatccagctttaatacatggtgtccgataaataaaaaaa
gttttcaatttccatgtacagttgaggttgcctttgtgaacaaccatata
ggcaatttggaaaagagatgttggaaagaaagtatatctctttttaaatt
attaattag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_83511779_83512981
seq2: B6Ng01-121H11.b_48_1237 (reverse)

seq1  GGCTTAAAATTCAGA--TGGAGTCCATGAGACAAA-AGAAGAAGAAACAG  47
      ||||||||  |||||   ||||||| |||| |||| ||||||  || |||
seq2  GGCTTAAA--TCAGAGTGGGAGTCC-TGAGCCAAAGAGAAGA--AACCAG  45

seq1  AATTCAATCCAAAGGTATAAAAACTCTGCTCAGTGACATTATAGTCAGAA  97
      ||||| |||||||||| ||||    ||  ||||||||||| | |||||||
seq2  AATTC-ATCCAAAGGT-TAAA----CTTGTCAGTGACATT-TTGTCAGAA  88

seq1  A--TGTGTCAAAGCTATAGGAAGAGATGACTACAAAACAGGCATTTTGAA  145
      |   |||||||||||||||| || ||||||||||||||||||| ||||||
seq2  AATGGTGTCAAAGCTATAGG-AGGGATGACTACAAAACAGGCA-TTTGAA  136

seq1  ATCCAAATAGATATTAACTGGAGAATCTTAGCAAGACAGAACAATATTCA  195
      ||||||||||||||| ||||||| |||||||||||||||||| |||||||
seq2  ATCCAAATAGATATT-ACTGGAG-ATCTTAGCAAGACAGAAC-ATATTCA  183

seq1  AAATGCCCCAACCATAAAGAAAACAAAACAACATTAAAAGATAAAAGATA  245
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAATGCCCCAACCATAAAGAAAAC-AAACAACATTAAAAGATAAAAGATA  232

seq1  AAAATGCCAACTCACAAGGGGCAGGTTCATCAGAACAGTATCAGATCACT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCCAACTCACAAGGGGCAGGTTCATCAGAACAGTATCAGATCACT  282

seq1  CAAGGAACACTTGGCAGCCAGAAAGGCACAAAATGAATATATTATAAGCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAACACTTGGCAGCCAGAAAGGCACAAAATGAATATATTATAAGCC  332

seq1  CTGAACACAAACAGCTGCCAATGTAGATTATTGTATCTAGCAAAGTTATG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACACAAACAGCTGCCAATGTAGATTATTGTATCTAGCAAAGTTATG  382

seq1  TTCCACTTGATGAAGAAACAATGACATTTCAAGGAAGCATAATTTAAAAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTTGATGAAGAAACAATGACATTTCAAGGAAGCATAATTTAAAAC  432

seq1  AATTTATAACTACCAAACCGTTATTGCTGAAGATACTCAACACTATATAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATAACTACCAAACCGTTATTGCTGAAGATACTCAACACTATATAC  482

seq1  AGAAAGATAAAGAAGATAAGAGTGGATGACTGCAGAATTCCATTCTTATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATAAAGAAGATAAGAGTGGATGACTGCAGAATTCCATTCTTATT  532

seq1  AGTAACTCTATCACTCAGAAAAATGTATTAACATGAAATGTCATAATGAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTCTATCACTCAGAAAAATGTATTAACATGAAATGTCATAATGAC  582

seq1  CTGGAGATAAACTGTCTTGGTATACATTTGATAATACTTTAGAAAATATC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGATAAACTGTCTTGGTATACATTTGATAATACTTTAGAAAATATC  632

seq1  TTCAGAAGATATGTTAATGATTTTAAAGAGCTTCTAACAAACTTAAAGAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAGATATGTTAATGATTTTAAAGAGCTTCTAACAAACTTAAAGAA  682

seq1  AATCATGGATATTTTACTATAATATACACTTACTAAAATAACCAGGTGAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGGATATTTTACTATAATATACACTTACTAAAATAACCAGGTGAT  732

seq1  TTGATTTCCAATATGATTGCCATCAACAAAGGAGAATTTACAAATAAATG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCCAATATGATTGCCATCAACAAAGGAGAATTTACAAATAAATG  782

seq1  TACTATTCATCATGGCTTAATATATCTGCTTTTTGAATGAATATTAATTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTCATCATGGCTTAATATATCTGCTTTTTGAATGAATATTAATTA  832

seq1  GTATTTTATAGTTAAATGAAGCAAAATTCAATTTTATTAGAATAATAGAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTATAGTTAAATGAAGCAAAATTCAATTTTATTAGAATAATAGAA  882

seq1  AATCTACTAACAAAAATTGTGATAATCATTCTTAACTGTCAATTTGATAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACTAACAAAAATTGTGATAATCATTCTTAACTGTCAATTTGATAC  932

seq1  TTTTGAAAGATGAATAGAAGGTTAATAACGCTAACTGTTAGCTATGCCTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAGATGAATAGAAGGTTAATAACGCTAACTGTTAGCTATGCCTG  982

seq1  CTAGAGAGTTTCTGGAGATAATTTACAGGAAAGAAACTAAGGGTGATAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAGTTTCTGGAGATAATTTACAGGAAAGAAACTAAGGGTGATAAA  1032

seq1  CATTCCCTGAAGGGAGGCATCCAATGGAATGAAAGTAGAGAAAGAAGAAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCTGAAGGGAGGCATCCAATGGAATGAAAGTAGAGAAAGAAGAAG  1082

seq1  CTTGTAGTCATGGCTAAACTTCATTGTCCTTGCATTAGTGGGCCTGTTGT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGTCATGGCTAAACTTCATTGTCCTTGCATTAGTGGGCCTGTTGT  1132

seq1  TTCTGCCCTTACCAGTGGATATCTGTGTCATTCTGCTTCATTCTTCCCTT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCCTTACCAGTGGATATCTGTGTCATTCTGCTTCATTCTTCCCTT  1182

seq1  CTGAATTC  1203
      ||||||||
seq2  CTGAATTC  1190

seq1: chr5_83343281_83344285
seq2: B6Ng01-121H11.g_184_1173

seq1  AGATGTAGGGTTGGTGAAGATCTGCTTCTAATCTGTAGGCTGCTATTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAGGGTTGGTGAAGATCTGCTTCTAATCTGTAGGCTGCTATTTTG  50

seq1  TTCTATTGACAGTGTCCTTTGCCTTACAGACACTTGCAGTTTCATGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTGACAGTGTCCTTTGCCTTACAGACACTTGCAGTTTCATGAGGT  100

seq1  CCCATTTATCAGTTGTTGATCTTAGAGCCTGAGCAATTGGTGCTCTGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTATCAGTTGTTGATCTTAGAGCCTGAGCAATTGGTGCTCTGTTC  150

seq1  CAGAAAGAACTTCCTGTACCAATTAGCCTTCATTGCTATTTTCCACTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAACTTCCTGTACCAATTAGCCTTCATTGCTATTTTCCACTTTT  200

seq1  TCTCCTGTGATACTTAGGCTTTCTCATTTTATGTTGAAGTCTTTAACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTGATACTTAGGCTTTCTCATTTTATGTTGAAGTCTTTAACCCA  250

seq1  CTTGGGCTTGAGTTTTTGCACAGGATGATAAATATGAATCTAATGGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCTTGAGTTTTTGCACAGGATGATAAATATGAATCTAATGGCTTC  300

seq1  CTTCTTCATGTAGAAGTCCATTTAGACCAGTACCATTTTGTTGAAAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCATGTAGAAGTCCATTTAGACCAGTACCATTTTGTTGAAAATGC  350

seq1  TTTCATTTTTTCCATTATATGGTTTTGACTTCTTTATCAAAAATCCAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTTTCCATTATATGGTTTTGACTTCTTTATCAAAAATCCAAGT  400

seq1  GTTCATATATGTGTGAGTTTATTTCTGGAAATTGATTGATTCCATTGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATATATGTGTGAGTTTATTTCTGGAAATTGATTGATTCCATTGATA  450

seq1  GATCTGTCTGTATCCATTCCAATCCCATGCAATTATTATTACTATTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTCTGTATCCATTCCAATCCCATGCAATTATTATTACTATTCTTT  500

seq1  TTGTCTGTTTGTCTGTTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTTTGTCTGTTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGC  550

seq1  CCTGGCTGTCCTGGAACCCACTCTGTAGACCAGGCTGGCCTCGAACTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGTCCTGGAACCCACTCTGTAGACCAGGCTGGCCTCGAACTCAG  600

seq1  AAATCTGCCTGCTTTTGCTTTCCAGGTGCTGGGATTAAGGCGTGCATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGCCTGCTTTTGCTTTCCAGGTGCTGGGATTAAGGCGTGCATGTG  650

seq1  CCACCCTTGAACTATTTTTTAGCACTGTTTTCATTGTGTCTCATAAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTTGAACTATTTTTTAGCACTGTTTTCATTGTGTCTCATAAATTT  700

seq1  GGGACAGAATGTTCACCTTCATTTTCACTGAATTCTAGAAAATTACTAAT  750
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGGACAGAATGTTCACCTTCATTTTCACTGAATTCTAG-AAATTACTAAT  749

seq1  TTCTTTCTCATTTCATCCCTGGTCCAGAGATCATTGAGTAGAGAGTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCTTTCTCATTTCATCCCTGGTCCAGAGATCATTGAGTAGAGAG-TCTT  798

seq1  CAGTTTCTATGAGTGTGTAGACATTCTTGGTGATTTTGTTGTTCTTAACA  850
      |||||||||||||||||||||||||| ||||||||||| ||||||  |||
seq2  CAGTTTCTATGAGTGTGTAGACATTC-TGGTGATTTTG-TGTTCT--ACA  844

seq1  TCCAGCTTTAATACATGGTTGTCCGATAAATAAAATAAGTTTTCCAATTT  900
      |||||||||||||||||| |||||||||||||||| ||||||| ||||||
seq2  TCCAGCTTTAATACATGG-TGTCCGATAAATAAAAAAAGTTTT-CAATTT  892

seq1  TCATGTACAGTTGAGGTTTGCTTTGTGAACATCTATATGGTCAATTTTGG  950
       |||||||||||||||||  ||||||||||| | |||| | ||| |||||
seq2  CCATGTACAGTTGAGGTTGCCTTTGTGAACAACCATATAGGCAA-TTTGG  941

seq1  AGAAGGAGATGTTGAAAAGAAGGTATATTCTTTTTTTAAATTTATTTTTA  1000
      | || ||||||||| |||||| ||||| ||| |||||||    ||| |||
seq2  A-AAAGAGATGTTGGAAAGAAAGTATA-TCTCTTTTTAA----ATTATTA  985

seq1  ATTAG  1005
      |||||
seq2  ATTAG  990