BAC Information

Click to search

BAC

Clone NameB6Ng01-121I17
Chromosome5 (Build37)
Map Location 31,477,038 - 31,595,890
singlet/doubletdoublet
Overlap geneGtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4
Upstream geneHadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17
Downstream geneGckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121I17.bB6Ng01-121I17.g
ACCDH925200DH925201
length1,1931,056
definitionDH925200|Mus musculus domesticus DNA, BAC clone: B6Ng01-121I17, 5' end.DH925201|Mus musculus domesticus DNA, BAC clone: B6Ng01-121I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,477,038 - 31,478,264)(31,594,808 - 31,595,890)
sequence
gaattcagtccccctgatccacgtagcatgtgtaaggagaaaaccaactt
ctacagttgtactctgacctccatatggtcagccacatgtgtggcccctc
aaaagacaaataaaagcacctccaacacacaaactattatgttaagtact
gttctaggatctagtaaagaggccaattaggacaaaaaacaaacaaacaa
acaaacaaacaaaaaagagctgggcatggtagtgtacacctgtaatccca
gctctgggaagctgaggcaggagatgttaggagtttgaaaccagcctggg
gtacacacaagcctgtttcggaaaacaaaacaaaaaataggcaagagagc
cagacgtggtggcacacgcctttaatcccagcactcgggaggcagagaca
cgtgaatttctgagttcgaggccagcctggtctacaaagtgagttcgagg
acagccagcgctacaaagagaaaccctgtctcaaacaaacaaacaaacaa
acaaacaaactaaataaataaaataaatcatatttagaccccccagcaca
atggaaaaggagatagaaagcacgcacctctggggaagaagcataacctc
ttaaaacagactaaatagcagggccaagcactgtgaagatggcgccaagg
cccaacaactatggaaactgaagcaaaaagacaattggagcccagaaatt
tggagccaatttggggtataatacagcaagaatgtattaaatatgagagt
tgccagatgctatcaaacagaccaagctaaagtaggatacccagaggtaa
ctaacacccattcccgtgaatgttagtaaaggaacagatttccttaagaa
gaagagctgtactgagctaggtggggtggagcactttgaaatcccagcac
ttgagaggtggaggcaggagttaaggttagccttggctacatgaaatcat
accttataaaagaaaagacaaacaacagagtaggttttctgatcctagcc
atcatgtacatttgattgggatagtgatgcctctgtctacatacataaga
tcatcttatcaatagagacttctcattgggtggtggtgtgggcacgctta
atccagaactcgggagcagaagcagccggattctgagttcgaggcgcctg
tgctcaaggtgagttccagaacagcaggctcattaaagagaaa
gaattcaggatgggtaatttttctcttacagaaaaagtctccatcaatca
acaccattgatgtttgatcggatgaagaaccagaaccagaagagaggatg
cactgtgaggatgcactgtatgagtaagggggcgggggcaggaaagccta
agatggtgacccgcttgagactcccacaaggcagtatgctcccagaatcc
caggctggtacccatcctctttccactgtaagcagggccagaatgtaggt
ctggtagattctgtatccctggacttgggagtggatatcaaatggaatat
ctcccatcccccaggtccaggggagaatcacttattcaaccctatcccac
taggtcctcgctaggggccccatgtcacctgcatcaggactattggcact
cactagctgcccctacagcttgcctctgggcctcagagaggggtgtttct
gcccgggttgccctccttcagtgagtcagaagaaccttctgggcctagag
gcagacgctgcattgcactattccagtgtcttccacggagcctctggggc
tcctccctcacctggcagcccctccagctgctggtgatctcacccctggg
acatttttccaataaaggttctggacaaactggaactgactggttcctgt
atggtatgctgaagacatctctacaccttgtcagttcttctcaggcctcc
accaacctgaaaggacagagtcttgataagatgtttgcgtcagtgtaaca
atgtattcatctaagatgggcggggaaagacaaaaggggaggggatgaaa
gccaaaggcctcccttctttgtctttgctgaatgagaagagagaaaatga
gaagtcacagttttcataccacagaaaccaggccatgtcatataaggcca
gtagattttttttttatctttgtcagacctgtgcatactagcaaatatct
actgtgcgctaataccatcccttcctgcacttttgactcagcactcactt
tggaatgtcagaggctgactgcttagagctgacggagagcagccaccact
agtgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31477038_31478264
seq2: B6Ng01-121I17.b_44_1236

seq1  GAATTCAGTCCCCCTGATCCACGTAGCATGTGTAAGGAGAAAACCAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCCCCTGATCCACGTAGCATGTGTAAGGAGAAAACCAACTT  50

seq1  CTACAGTTGTACTCTGACCTCCATATGGTCAGCCACATGTGTGGCCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTTGTACTCTGACCTCCATATGGTCAGCCACATGTGTGGCCCCTC  100

seq1  AAAAGACAAATAAAAGCACCTCCAACACACAAACTATTATGTTAAGTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAAATAAAAGCACCTCCAACACACAAACTATTATGTTAAGTACT  150

seq1  GTTCTAGGATCTAGTAAAGAGGCCAATTAGGACAAAAAACAAACAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGGATCTAGTAAAGAGGCCAATTAGGACAAAAAACAAACAAACAA  200

seq1  ACAAACAAACAAAAAAGAGCTGGGCATGGTAGTGTACACCTGTAATCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAAAAAGAGCTGGGCATGGTAGTGTACACCTGTAATCCCA  250

seq1  GCTCTGGGAAGCTGAGGCAGGAGATGTTAGGAGTTTGAAACCAGCCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGGAAGCTGAGGCAGGAGATGTTAGGAGTTTGAAACCAGCCTGGG  300

seq1  GTACACACAAGCCTGTTTCGGAAAACAAAACAAAAAATAGGCAAGAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACACAAGCCTGTTTCGGAAAACAAAACAAAAAATAGGCAAGAGAGC  350

seq1  CAGACGTGGTGGCACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACGTGGTGGCACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGACA  400

seq1  CGTGAATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCGAGG  450

seq1  ACAGCCAGCGCTACAAAGAGAAACCCTGTCTCAAACAAACAAACAAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGCGCTACAAAGAGAAACCCTGTCTCAAACAAACAAACAAACAA  500

seq1  ACAAACAAACTAAATAAATAAAATAAATCATATTTAGACCCCCCAGCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACTAAATAAATAAAATAAATCATATTTAGACCCCCCAGCACA  550

seq1  ATGGAAAAGGAGATAGAAAGCACGCACCTCTGGGGAAGAAGCATAACCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAAGGAGATAGAAAGCACGCACCTCTGGGGAAGAAGCATAACCTC  600

seq1  TTAAAACAGACTAAATAGCAGGGCCAAGCACTGTGAAGATGGCGCCAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAGACTAAATAGCAGGGCCAAGCACTGTGAAGATGGCGCCAAGG  650

seq1  CCCAACAACTATGGAAACTGAAGCAAAAAGACAATTGGAGCCCAGAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAACTATGGAAACTGAAGCAAAAAGACAATTGGAGCCCAGAAATT  700

seq1  TGGAGCCAATTTGGGGTATAATACAGCAAGAATGTATTAAATATGAGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCAATTTGGGGTATAATACAGCAAGAATGTATTAAATATGAGAGT  750

seq1  TGCCAGATGCTATCAAACAGACCAAGCTAAAGTAGGATACCCAGAGGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGATGCTATCAAACAGACCAAGCTAAAGTAGGATACCCAGAGGTAA  800

seq1  CTAACACCCATTCCCGTGAATGTTAGTAAAGGAACAGATTTCCTTAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACCCATTCCCGTGAATGTTAGTAAAGGAACAGATTTCCTTAAGAA  850

seq1  GAAGAGCTGTACTGAGCTAGGTGGGGTGGAGCACTTTGAAATCCCAGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCTGTACTGAGCTAGGTGGGGTGGAGCACTTTGAAATCCCAGCAC  900

seq1  TTGAGAGGTGGAGGCAGGAGTTTAAGGTTAGCCTTGGCTACATGAAATCA  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTGAGAGGTGGAGGCAGGAG-TTAAGGTTAGCCTTGGCTACATGAAATCA  949

seq1  TACCTTATAAAAAGAAAAAGAACAAAACAAAACAAGAGTTAAGGGTTTTC  1000
      ||||||||||||   ||||||   ||||||    |||||    |||||||
seq2  TACCTTATAAAA--GAAAAGA--CAAACAA---CAGAGT---AGGTTTTC  989

seq1  TGGATCCTAGCCATCAATGTTACATTTGAATTGGGGATAGTGGATGCCTC  1050
      | ||||||||||||| ||| |||||||||  | |||||||| ||||||||
seq2  T-GATCCTAGCCATC-ATG-TACATTTGA--TTGGGATAGT-GATGCCTC  1033

seq1  TGGTCTACAATACAATTAAAGATCATCCTATCACATTAAGAGGACTTTCT  1100
      | |||||| |||||    ||||||||| ||||| ||  ||| ||| ||||
seq2  T-GTCTAC-ATACA---TAAGATCATCTTATCA-AT--AGA-GAC-TTCT  1073

seq1  CAATGGGTGGTGGTG-GTGCACGCCTTTAATCCCAGCACTCGGGAAGCAG  1149
      || |||||||||||| | ||||||  ||||| |||| ||||||| |||||
seq2  CATTGGGTGGTGGTGTGGGCACGC--TTAAT-CCAGAACTCGGG-AGCAG  1119

seq1  AGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTT  1199
      | |||| |||| |||||||||||||||  |||||  || ||| |||||||
seq2  AAGCAGCCGGA-TTCTGAGTTCGAGGC--GCCTGTGCT-CAAGGTGAGTT  1165

seq1  CCAGGACAGCCAGGGCTATAAAGAGAAA  1227
      |||| |||||  |  |  ||||||||||
seq2  CCAGAACAGCAGGCTCATTAAAGAGAAA  1193

seq1: chr5_31594808_31595890
seq2: B6Ng01-121I17.g_66_1121 (reverse)

seq1  GGCACATTAGTGGTGGCTGCTCTCCTGTCAGCTCCTAAGACAGCTCAGCC  50
      |||||  |||||||||||||||||| ||||||| ||||| ||| ||||||
seq2  GGCAC--TAGTGGTGGCTGCTCTCC-GTCAGCT-CTAAG-CAG-TCAGCC  44

seq1  CTTCTGACCATTTCCCCAAAGTGAGTGCTGGAGTCAAAAGTGCAGGGAAG  100
        ||||| ||||   |||||||||||||| |||||||||||||| |||||
seq2  --TCTGA-CATT---CCAAAGTGAGTGCT-GAGTCAAAAGTGCA-GGAAG  86

seq1  GGATTGGTTATATAGCGCAACAGTAGAATATTTGCTTAGTATGCACAAGG  150
      ||||  | ||| |||||| ||||||| |||||||| |||||||||| |||
seq2  GGAT--GGTAT-TAGCGC-ACAGTAG-ATATTTGC-TAGTATGCAC-AGG  129

seq1  TCCTGAACAAAGATAAAAAAAAAATCTACTGGCCCTTTTATATGACATGG  200
      | ||| ||||||||||||||||||||||||||||   |||||||||||||
seq2  T-CTG-ACAAAGATAAAAAAAAAATCTACTGGCC---TTATATGACATGG  174

seq1  CCTGGTTTCTGTTGGTATGAAAACTGTGACTTCTCATTTTCTCTCTTCTC  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTCTG-TGGTATGAAAACTGTGACTTCTCATTTTCTCTCTTCTC  223

seq1  ATTCAGCAAAGACAAAGAAGGGAGGCCTTTGGCTTTCATCCCCTCCCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCAAAGACAAAGAAGGGAGGCCTTTGGCTTTCATCCCCTCCCCTT  273

seq1  TTGTCTTTCCCCGCCCATCTTAGATGAATACATTGTTACACTGACGCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTCCCCGCCCATCTTAGATGAATACATTGTTACACTGACGCAAA  323

seq1  CATCTTATCAAGACTCTGTCCTTTCAGGTTGGTGGAGGCCTGAGAAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTATCAAGACTCTGTCCTTTCAGGTTGGTGGAGGCCTGAGAAGAAC  373

seq1  TGACAAGGTGTAGAGATGTCTTCAGCATACCATACAGGAACCAGTCAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGGTGTAGAGATGTCTTCAGCATACCATACAGGAACCAGTCAGTT  423

seq1  CCAGTTTGTCCAGAACCTTTATTGGAAAAATGTCCCAGGGGTGAGATCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTGTCCAGAACCTTTATTGGAAAAATGTCCCAGGGGTGAGATCAC  473

seq1  CAGCAGCTGGAGGGGCTGCCAGGTGAGGGAGGAGCCCCAGAGGCTCCGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCTGGAGGGGCTGCCAGGTGAGGGAGGAGCCCCAGAGGCTCCGTG  523

seq1  GAAGACACTGGAATAGTGCAATGCAGCGTCTGCCTCTAGGCCCAGAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACACTGGAATAGTGCAATGCAGCGTCTGCCTCTAGGCCCAGAAGGT  573

seq1  TCTTCTGACTCACTGAAGGAGGGCAACCCGGGCAGAAACACCCCTCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGACTCACTGAAGGAGGGCAACCCGGGCAGAAACACCCCTCTCTG  623

seq1  AGGCCCAGAGGCAAGCTGTAGGGGCAGCTAGTGAGTGCCAATAGTCCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAGAGGCAAGCTGTAGGGGCAGCTAGTGAGTGCCAATAGTCCTGA  673

seq1  TGCAGGTGACATGGGGCCCCTAGCGAGGACCTAGTGGGATAGGGTTGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTGACATGGGGCCCCTAGCGAGGACCTAGTGGGATAGGGTTGAAT  723

seq1  AAGTGATTCTCCCCTGGACCTGGGGGATGGGAGATATTCCATTTGATATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATTCTCCCCTGGACCTGGGGGATGGGAGATATTCCATTTGATATC  773

seq1  CACTCCCAAGTCCAGGGATACAGAATCTACCAGACCTACATTCTGGCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCAAGTCCAGGGATACAGAATCTACCAGACCTACATTCTGGCCCT  823

seq1  GCTTACAGTGGAAAGAGGATGGGTACCAGCCTGGGATTCTGGGAGCATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACAGTGGAAAGAGGATGGGTACCAGCCTGGGATTCTGGGAGCATAC  873

seq1  TGCCTTGTGGGAGTCTCAAGCGGGTCACCATCTTAGGCTTTCCTGCCCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTGGGAGTCTCAAGCGGGTCACCATCTTAGGCTTTCCTGCCCCC  923

seq1  GCCCCCTTACTCATACAGTGCATCCTCACAGTGCATCCTCTCTTCTGGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCTTACTCATACAGTGCATCCTCACAGTGCATCCTCTCTTCTGGTT  973

seq1  CTGGTTCTTCATCCGATCAAACATCAATGGTGTTGATTGATGGAGACTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCTTCATCCGATCAAACATCAATGGTGTTGATTGATGGAGACTTT  1023

seq1  TTCTGTAAGAGAAAAATTACCCATCCTGAATTC  1083
      |||||||||||||||||||||||||||||||||
seq2  TTCTGTAAGAGAAAAATTACCCATCCTGAATTC  1056