BAC Information

Click to search

BAC

Clone NameB6Ng01-121L08
Chromosome5 (Build37)
Map Location 109,790,656 - 109,890,780
singlet/doubletdoublet
Overlap geneEG384220, EG636052, EG384221
Upstream genePde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223
Downstream geneLOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121L08.bB6Ng01-121L08.g
ACCDH925326DH925327
length1,1011,231
definitionDH925326|Mus musculus domesticus DNA, BAC clone: B6Ng01-121L08, 5' end.DH925327|Mus musculus domesticus DNA, BAC clone: B6Ng01-121L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,889,675 - 109,890,780)(109,790,656 - 109,791,895)
sequence
gaattcagtagatttagagtttggaatggtattggggctcacactccatg
tgtgatcaaatgacccttactccatatagatttcagacactatggttgat
gactgtgcagcctagctgactccagattaaacttggatccatctgctcta
ccctaattatttccttaataagacacggttctgagttttccataaattta
tagcttccagtgtcttgaaaggagcactgttgatatcaagaagaatgtgg
tagacatttccaacttgtaagatactttgtcattatggcagcactttctc
tctctctaacgagagaaatccagaaagttttcttatgaaacagtttcact
tgatacctgtgttgtcagaatcaagtatctgccaaacatttaaagtcttg
acctttctaaatagcccctagctgtgtggatgattctcatttgctctgct
tgccaacttttcctgtcactctcttaccaggttgtggcagtttctgattg
gtgtgctctacatatagttaatatctctgatgtgcactacctgagtcttc
ctagtcatagttgtagagctaattcatgcttcctgctctttcagtcatta
ccatgaagtttctagtagtccgtgtgttttaggataaaatgttctgtaaa
tatctgttaaatccatttgtttcataacttctgttagtttcactgtggcc
ctgtttagtttctgtttccatgatctgtccatttatgaaagtggtgtgtt
gaagtctcccattattattgtgtgaggtacaatgtgtgctttgagcttta
ctaaagtttctttaatgaatgtggctgcccttgcatttggagcatagata
ttcagaattgagagttcctcttggaagattttacctttgatgagtatgaa
gtgcccatccttgtcttttctgataacttgggttggaagtcgatttatcc
gatattagaatggctactccagcttgtttcttcagactgtttgcttggaa
aattgttttcagctttcactctgaggtagtgtctgtcttttcccctgaga
atgggtttctgtaagcagcagaatgttgggtctgtttgtgttagcagtct
g
gaattcacatgcctattcaatccacagtacagaaacacatttaacacaca
cacaattttgcaactatatattaaccataaaattttgtgattacctgtga
acatacttttagcctaatgaagtaaagctcataatgattaatagaaatat
ttctccacattcaaggttttcatttaaacttagaataattttattaattc
tatgagagtcttgtgtagcattaccttgtttatattcatcaaacaactct
ttcgacccccccttacttttttcaacatgcaactcagtatcctttttctt
ttatttatgaaccatgtgagagaaactgattaaacatgaatactttttta
atgtaatcagtttaggaagaaatttttctaaatatctataacacaaatat
tacccatataataatacctgattgggttaatattgagtgactgtcagggc
attgcaatcttatataaaataataaagtgccccaaattgataagagatgc
ctgttagcagaggaatatgtttagccatatctgttaatgacatatacata
tatatgtacaacatatataccatatgtataattacccatatatgtttatt
catatgtatatacatatgtatgtgtatattgcctcaggttcccacctcca
tgtgtagtgtgacatgtgctgctgggttcaggaaaattcatcagaaacat
acagccgactgctgctttgattgtgtcctgtgcccagaaaatgaggtttc
caatgaaacaggtacatgtttgcatacagaaaaaaaagctgaattaaaat
attttctttttccaaactagaattgtgaatgggcctatatgaaaactgaa
aacctaaaatctctgtgtttcagaatttaatcatttggaatagtatcaga
attttacaaccttgccaataacctgcaattatcttctaaaaacaacacat
ttctcttcataatattgatggttctgatctaatatttttgcaaaaaaaag
tttatgtggacaaacacctgtaaccatttttaaaacaaatttaggcatag
tttgtacatatgtttcatcttcattattttttttaaaagcactgactaac
atgaccagtcatagttcttcctttcatcttcaaactggaatctgacaaga
agatcgaactaaggaaccagtattcttaatggaaatcattagatctcaga
taatggctcaagagataaccttgtgggcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_109889675_109890780
seq2: B6Ng01-121L08.b_49_1149 (reverse)

seq1  CAGACTGGCTACACAAACAGGGCCCAACATTCTGCTGCTTACAGGAAACC  50
      |||||||   ||||||||| | ||||||||||||||||||||| ||||||
seq2  CAGACTGCTAACACAAACA-GACCCAACATTCTGCTGCTTACA-GAAACC  48

seq1  CA-TCTCAGGGGAAAAGACAGACACTACCTCAGAGTGAAAGGCTGAAAAA  99
      || ||||||||||||||||||||||||||||||||||||| |||| ||||
seq2  CATTCTCAGGGGAAAAGACAGACACTACCTCAGAGTGAAA-GCTG-AAAA  96

seq1  CAATTTTCCAAGCAAACAGTCTGAAGAAACAAGCTGGAGTAGCCATTCTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTCCAAGCAAACAGTCTGAAGAAACAAGCTGGAGTAGCCATTCTA  146

seq1  ATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAGAAAAGACAAGGA  199
      ||||||||| ||||||||||||||||| ||||||||||||||||||||||
seq2  ATATCGGAT-AAATCGACTTCCAACCC-AAGTTATCAGAAAAGACAAGGA  194

seq1  TGGGCACTTCATACTCATCAAAGGTAAAATCTTCCAAGAGGAACTCTCAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACTTCATACTCATCAAAGGTAAAATCTTCCAAGAGGAACTCTCAA  244

seq1  TTCTGAATATCTATGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATATCTATGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGAA  294

seq1  ACTTTAGTAAAGCTCAAAGCACACATTGTACCTCACACAATAATAATGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGTAAAGCTCAAAGCACACATTGTACCTCACACAATAATAATGGG  344

seq1  AGACTTCAACACACCACTTTCATAAATGGACAGATCATGGAAACAGAAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCAACACACCACTTTCATAAATGGACAGATCATGGAAACAGAAAC  394

seq1  TAAACAGGGCCACAGTGAAACTAACAGAAGTTATGAAACAAATGGATTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGGGCCACAGTGAAACTAACAGAAGTTATGAAACAAATGGATTTA  444

seq1  ACAGATATTTACAGAACATTTTATCCTAAAACACACGGACTACTAGAAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATTTACAGAACATTTTATCCTAAAACACACGGACTACTAGAAAC  494

seq1  TTCATGGTAATGACTGAAAGAGCAGGAAGCATGAATTAGCTCTACAACTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGTAATGACTGAAAGAGCAGGAAGCATGAATTAGCTCTACAACTA  544

seq1  TGACTAGGAAGACTCAGGTAGTGCACATCAGAGATATTAACTATATGTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGGAAGACTCAGGTAGTGCACATCAGAGATATTAACTATATGTAG  594

seq1  AGCACACCAATCAGAAACTGCCACAACCTGGTAAGAGAGTGACAGGAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACCAATCAGAAACTGCCACAACCTGGTAAGAGAGTGACAGGAAAA  644

seq1  GTTGGCAAGCAGAGCAAATGAGAATCATCCACACAGCTAGGGGCTATTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCAAGCAGAGCAAATGAGAATCATCCACACAGCTAGGGGCTATTTA  694

seq1  GAAAGGTCAAGACTTTAAATGTTTGGCAGATACTTGATTCTGACAACACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTCAAGACTTTAAATGTTTGGCAGATACTTGATTCTGACAACACA  744

seq1  GGTATCAAGTGAAACTGTTTCATAAGAAAACTTTCTGGATTTCTCTCGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCAAGTGAAACTGTTTCATAAGAAAACTTTCTGGATTTCTCTCGTT  794

seq1  AGAGAGAGAGAAAGTGCTGCCATAATGACAAAGTATCTTACAAGTTGGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAAAGTGCTGCCATAATGACAAAGTATCTTACAAGTTGGAA  844

seq1  ATGTCTACCACATTCTTCTTGATATCAACAGTGCTCCTTTCAAGACACTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTACCACATTCTTCTTGATATCAACAGTGCTCCTTTCAAGACACTG  894

seq1  GAAGCTATAAATTTATGGAAAACTCAGAACCGTGTCTTATTAAGGAAATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTATAAATTTATGGAAAACTCAGAACCGTGTCTTATTAAGGAAATA  944

seq1  ATTAGGGTAGAGCAGATGGATCCAAGTTTAATCTGGAGTCAGCTAGGCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGTAGAGCAGATGGATCCAAGTTTAATCTGGAGTCAGCTAGGCTG  994

seq1  CACAGTCATCAACCATAGTGTCTGAAATCTATATGGAGTAAGGGTCATTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCATCAACCATAGTGTCTGAAATCTATATGGAGTAAGGGTCATTT  1044

seq1  GATCACACATGGAGTGTGAGCCCCAATACCATTCCAAACTCTAAATCTAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACACATGGAGTGTGAGCCCCAATACCATTCCAAACTCTAAATCTAC  1094

seq1  TGAATTC  1106
      |||||||
seq2  TGAATTC  1101

seq1: chr5_109790656_109791895
seq2: B6Ng01-121L08.g_68_1298

seq1  GAATTCACATGCCTATTCAATCCACAGTACAGAAACACATTTAACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGCCTATTCAATCCACAGTACAGAAACACATTTAACACACA  50

seq1  CACAATTTTGCAACTATATATTAACCATAAAATTTTGTGATTACCTGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTTTGCAACTATATATTAACCATAAAATTTTGTGATTACCTGTGA  100

seq1  ACATACTTTTAGCCTAATGAAGTAAAGCTCATAATGATTAATAGAAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTTTTAGCCTAATGAAGTAAAGCTCATAATGATTAATAGAAATAT  150

seq1  TTCTCCACATTCAAGGTTTTCATTTAAACTTAGAATAATTTTATTAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACATTCAAGGTTTTCATTTAAACTTAGAATAATTTTATTAATTC  200

seq1  TATGAGAGTCTTGTGTAGCATTACCTTGTTTATATTCATCAAACAACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAGTCTTGTGTAGCATTACCTTGTTTATATTCATCAAACAACTCT  250

seq1  TTCGACCCCCCCTTACTTTTTTCAACATGCAACTCAGTATCCTTTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGACCCCCCCTTACTTTTTTCAACATGCAACTCAGTATCCTTTTTCTT  300

seq1  TTATTTATGAACCATGTGAGAGAAACTGATTAAACATGAATACTTTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATGAACCATGTGAGAGAAACTGATTAAACATGAATACTTTTTTA  350

seq1  ATGTAATCAGTTTAGGAAGAAATTTTTCTAAATATCTATAACACAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATCAGTTTAGGAAGAAATTTTTCTAAATATCTATAACACAAATAT  400

seq1  TACCCATATAATAATACCTGATTGGGTTAATATTGAGTGACTGTCAGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATATAATAATACCTGATTGGGTTAATATTGAGTGACTGTCAGGGC  450

seq1  ATTGCAATCTTATATAAAATAATAAAGTGCCCCAAATTGATAAGAGATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAATCTTATATAAAATAATAAAGTGCCCCAAATTGATAAGAGATGC  500

seq1  CTGTTAGCAGAGGAATATGTTTAGCCATATCTGTTAATGACATATACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGCAGAGGAATATGTTTAGCCATATCTGTTAATGACATATACATA  550

seq1  TATATGTACAACATATATACCATATGTATAATTACCCATATATGTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTACAACATATATACCATATGTATAATTACCCATATATGTTTATT  600

seq1  CATATGTATATACATATGTATGTGTATATTGCCTCAGGTTCCCACCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTATATACATATGTATGTGTATATTGCCTCAGGTTCCCACCTCCA  650

seq1  TGTGTAGTGTGACATGTGCTGCTGGGTTCAGGAAAATTCATCAGAAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGTGTGACATGTGCTGCTGGGTTCAGGAAAATTCATCAGAAACAT  700

seq1  ACAGCCGACTGCTGCTTTGATTGTGTCCTGTGCCCAGAAAATGAGGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCGACTGCTGCTTTGATTGTGTCCTGTGCCCAGAAAATGAGGTTTC  750

seq1  CAATGAAACAGGTACATGTTTGCATACAGAAAAAAAAGCTGAATTAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAACAGGTACATGTTTGCATACAGAAAAAAAAGCTGAATTAAAAT  800

seq1  ATTTTCTTTTTCCAAACTAGAATTGTGAAATGGCCTATATGAAAACTGAA  850
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  ATTTTCTTTTTCCAAACTAGAATTGTGAATGGGCCTATATGAAAACTGAA  850

seq1  AACCTAAAATCTCTGTGTTTCAGAATTTAATCATTT-GAATAGTATCAGA  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AACCTAAAATCTCTGTGTTTCAGAATTTAATCATTTGGAATAGTATCAGA  900

seq1  ATTTTACAACCCTGCCAATAACCTGCAA-TATCTTCTATAAACAACACAT  948
      ||||||||||| |||||||||||||||| ||||||||| |||||||||||
seq2  ATTTTACAACCTTGCCAATAACCTGCAATTATCTTCTAAAAACAACACAT  950

seq1  TTCTC-TCATAATA-TGATGGTTTCTGATCTTATATTTTTGC-AGAAAAA  995
      ||||| |||||||| |||||| ||||||||| |||||||||| | |||||
seq2  TTCTCTTCATAATATTGATGG-TTCTGATCTAATATTTTTGCAAAAAAAA  999

seq1  GTTTATGTGGACAAACACCTGTAACCATTTTTAAAAACAAAATTTTAGGC  1045
      |||||||||||||||||||||||||||||||| ||||||||  |||||||
seq2  GTTTATGTGGACAAACACCTGTAACCATTTTT-AAAACAAA--TTTAGGC  1046

seq1  ATAGTCTGTACATATGTTTCATCTTCATTATTTTTTTTAAAAAGCAACTT  1095
      ||||| |||||||||||||||||||||||||||||||| |||||||   |
seq2  ATAGTTTGTACATATGTTTCATCTTCATTATTTTTTTT-AAAAGCA--CT  1093

seq1  GACT-ACATGACCAGTCCATAGTCTTTCCTTTCCATCTTCAAACTGGATC  1144
      |||| ||||||||||| ||||||  ||||||| |||||||||||||||  
seq2  GACTAACATGACCAGT-CATAGTTCTTCCTTT-CATCTTCAAACTGGAAT  1141

seq1  CTGACA--GAGATCAGAAACTTAGGGACACAGTTATTCTTTAATGAAATA  1192
      ||||||   |||||   |||| ||| || ||| ||||| |||||| ||  
seq2  CTGACAAGAAGATC--GAACTAAGGAAC-CAG-TATTC-TTAATGGAAAT  1186

seq1  CATTTTAAGATCTCAG---ATGGCTCAAAGGATGAAGCATTTGTGGGCAA  1239
      ||||   |||||||||   |||||||||  ||| || |  ||||||||||
seq2  CATT---AGATCTCAGATAATGGCTCAAGAGAT-AACC--TTGTGGGCAA  1230

seq1  A  1240
      |
seq2  A  1231