BAC Information

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BAC

Clone NameB6Ng01-121O13
Chromosome5 (Build37)
Map Location 104,967,769 - 105,086,255
singlet/doubletdoublet
Overlap geneLOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963
Upstream genePtpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165
Downstream geneLOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b, Lrrc8c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121O13.bB6Ng01-121O13.g
ACCDH925472DH925473
length1,171449
definitionDH925472|Mus musculus domesticus DNA, BAC clone: B6Ng01-121O13, 5' end.DH925473|Mus musculus domesticus DNA, BAC clone: B6Ng01-121O13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,967,769 - 104,968,946)(105,085,801 - 105,086,255)
sequence
gaattctattcaagtgtttgtttagagcacattgtattatgtattcatat
gctaatactgtccctatcttttgcagctcttcagattcatgaattttaac
aagtccatgagccagctctcaaccatgtcatgatgtgccaaaaaaacctg
atgttcttcactgtttccttggcatatgcccagttggcattcagttggat
gacttaggtaccttccaggtatatgtaagtattttcagatcataaaggaa
aaaattaatgctcctgccttctcaataatgtttgttagttatccaccttg
tgttaaaaatacgagtaaatgacctatttcacaaacccacccaagaaatt
aagaaaaatgtgaattactgatgcttaggaaagcattactcatgaaccag
gcatggtggagtgagctgatagcaccagtactaagaagtggagacaggag
gataggagtttgaagtcacctccttctgtatagcaggttcagctctcagt
agtgagaggtaatgaagcagctgtaagaacacaagtactgttgaaatgac
caacatcttctgaacattgagtgcagctgaaaacatttattttgattagt
tacatttattttatttttttattggaggtgtatgtgtgtgcacagacaca
tgtgcacgaacatagaggtcagaaagaaccccttcagggttagttctttc
cttgtaccatgtgtattctggttccaagcttgaggattggcagtgagcag
gcacgtgcactccctgggctgtcctgcactgcccttgagagctttgccaa
actcagttgctgagtccttggccctgttcatcccatcacaacaaaagacc
aatctttagtcctgctgacagttgtttccatagtttcaacttcaaataat
gtaatgagtaaaagaagtatactattttaagatggagtggtacggggatt
ttttagtttagtgtttccacgtgtataggaaacagcagtagtcgttgcta
gatgttctgtgctgtaacaaagcagtcagcatgtagaaagaatgttacag
ctttgcattaataggcctttggtgaagagggacagagtcttaaatactgg
taatagaagtagaatgggaggaattcattaagcctccagagctttggaca
accctagtctttggctcactt
ttatctccaagagagcaagaggagggcagggtgactaagcatggactgct
aacatggatcagattgtgctgtttgtacagcatcagacacatcatagacc
cggtaaagttaaaggttgaagagtaagtttcactactcaatcagttttaa
cgttctagcatggattagggaaggacatacaagttgcccctgcccctgga
cctctcctcaccctacaccccacctctaggtgaggagatattgacacttg
atgactgaatgccaggggagtgaaagtcagttttcgtcaggacagtgatc
cttggtgtgttggctaagcaggagaggattttactctgaggagtatatgg
gcagtgctaaatggacccctctgtgggttactgaaaacgaaggagaggaa
tggggatggggagggcagaaggaaagagagacaaagaagaggaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_104967769_104968946
seq2: B6Ng01-121O13.b_48_1218

seq1  GAATTCTATTCAAGTGTTTGTTTAGAGCACATTGTATTATGTATTCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTCAAGTGTTTGTTTAGAGCACATTGTATTATGTATTCATAT  50

seq1  GCTAATACTGTCCCTATCTTTTGCAGCTCTTCAGATTCATGAATTTTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATACTGTCCCTATCTTTTGCAGCTCTTCAGATTCATGAATTTTAAC  100

seq1  AAGTCCATGAGCCAGCTCTCAACCATGTCATGATGTGCCAAAAAAACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATGAGCCAGCTCTCAACCATGTCATGATGTGCCAAAAAAACCTG  150

seq1  ATGTTCTTCACTGTTTCCTTGGCATATGCCCAGTTGGCATTCAGTTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTCACTGTTTCCTTGGCATATGCCCAGTTGGCATTCAGTTGGAT  200

seq1  GACTTAGGTACCTTCCAGGTATATGTAAGTATTTTCAGATCATAAAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGGTACCTTCCAGGTATATGTAAGTATTTTCAGATCATAAAGGAA  250

seq1  AAAATTAATGCTCCTGCCTTCTCAATAATGTTTGTTAGTTATCCACCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAATGCTCCTGCCTTCTCAATAATGTTTGTTAGTTATCCACCTTG  300

seq1  TGTTAAAAATACGAGTAAATGACCTATTTCACAAACCCACCCAAGAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAAATACGAGTAAATGACCTATTTCACAAACCCACCCAAGAAATT  350

seq1  AAGAAAAATGTGAATTACTGATGCTTAGGAAAGCATTACTCATGAACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAATGTGAATTACTGATGCTTAGGAAAGCATTACTCATGAACCAG  400

seq1  GCATGGTGGAGTGAGCTGATAGCACCAGTACTAAGAAGTGGAGACAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTGGAGTGAGCTGATAGCACCAGTACTAAGAAGTGGAGACAGGAG  450

seq1  GATAGGAGTTTGAAGTCACCTCCTTCTGTATAGCAGGTTCAGCTCTCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGAGTTTGAAGTCACCTCCTTCTGTATAGCAGGTTCAGCTCTCAGT  500

seq1  AGTGAGAGGTAATGAAGCAGCTGTAAGAACACAAGTACTGTTGAAATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAGGTAATGAAGCAGCTGTAAGAACACAAGTACTGTTGAAATGAC  550

seq1  CAACATCTTCTGAACATTGAGTGCAGCTGAAAACATTTATTTTGATTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCTTCTGAACATTGAGTGCAGCTGAAAACATTTATTTTGATTAGT  600

seq1  TACATTTATTTTATTTTTTTATTGGAGGTGTATGTGTGTGCACAGACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTATTTTATTTTTTTATTGGAGGTGTATGTGTGTGCACAGACACA  650

seq1  TGTGCACGAACATAGAGGTCAGAAAGAACCCCTTCAGGGTTAGTTCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACGAACATAGAGGTCAGAAAGAACCCCTTCAGGGTTAGTTCTTTC  700

seq1  CTTGTACCATGTGTATTCTGGTTCCAAGCTTGAGGATTGGCAGTGAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACCATGTGTATTCTGGTTCCAAGCTTGAGGATTGGCAGTGAGCAG  750

seq1  GCACGTGCACTCCCTGGGCTGTCCTGCACTGCCCTTGAGAGCTTTGCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGTGCACTCCCTGGGCTGTCCTGCACTGCCCTTGAGAGCTTTGCCAA  800

seq1  ACTCAGTTGCTGAGTCCTTGGCCCTGTTCATCCCATCACAACAAAAGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTTGCTGAGTCCTTGGCCCTGTTCATCCCATCACAACAAAAGACC  850

seq1  AATCTTTAGTCCTGCTGACAGTTGTTTCCATAGTTTCAACTTCAAATAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTAGTCCTGCTGACAGTTGTTTCCATAGTTTCAACTTCAAATAAT  900

seq1  GTAATGAGTAAAAGAAAGTTATACTATTTTAAGATGGAGTGGTACGGGGA  950
      ||||||||||||||||   |||||||||||||||||||||||||||||||
seq2  GTAATGAGTAAAAGAA--GTATACTATTTTAAGATGGAGTGGTACGGGGA  948

seq1  TTTTTTAGTTTAGTGTTTCCACGTGTATAGGAAACAGCAGTAGTCGTTGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAGTTTAGTGTTTCCACGTGTATAGGAAACAGCAGTAGTCGTTGC  998

seq1  TAGATGTTCTGTGCTGTTAACAAAGCAGTCAGCATGTAAGAAAGATTGTT  1050
      |||||||||||||||| |||||||||||||||||||| ||||||| ||||
seq2  TAGATGTTCTGTGCTG-TAACAAAGCAGTCAGCATGT-AGAAAGAATGTT  1046

seq1  ACAGCTTTGCATTAATA-GCCTTTGGTGAAGAGGGACAGAGTCCTTAATT  1099
      ||||||||||||||||| |||||||||||||||||||||||| ||||| |
seq2  ACAGCTTTGCATTAATAGGCCTTTGGTGAAGAGGGACAGAGT-CTTAAAT  1095

seq1  ACTGGTATTAGAAGTTAGGAATGGAAGTGATTTCATTAAG-CTCC--AGC  1146
      ||||||| |||||||   |||||| || || ||||||||| ||||  |||
seq2  ACTGGTAATAGAAGT--AGAATGGGAG-GAATTCATTAAGCCTCCAGAGC  1142

seq1  TTT-GACAACACCTAGTCTTCTGGGCCTCACTT  1178
      ||| |||||| ||||||||| |||  |||||||
seq2  TTTGGACAAC-CCTAGTCTT-TGG--CTCACTT  1171

seq1: chr5_105085801_105086255
seq2: B6Ng01-121O13.g_70_524 (reverse)

seq1  TCCTCCTCCTCTTCTTTGTCTCTCTTTCCTTCTGCCCTCCCCATCCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCTCTTCTTTGTCTCTCTTTCCTTCTGCCCTCCCCATCCCCAT  50

seq1  TCCTCTCCTTCGTTTTCAGTAACCCACAGAGGGGTCCATTTAGCACTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCTTCGTTTTCAGTAACCCACAGAGGGGTCCATTTAGCACTGCC  100

seq1  CATATACTCCTCAGAGTAAAATCCTCTCCTGCTTAGCCAACACACCAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACTCCTCAGAGTAAAATCCTCTCCTGCTTAGCCAACACACCAAGG  150

seq1  ATCACTGTCCTGACGAAAACTGACTTTCACTCCCCTGGCATTCAGTCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGTCCTGACGAAAACTGACTTTCACTCCCCTGGCATTCAGTCATC  200

seq1  AAGTGTCAATATCTCCTCACCTAGAGGTGGGGTGTAGGGTGAGGAGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCAATATCTCCTCACCTAGAGGTGGGGTGTAGGGTGAGGAGAGGT  250

seq1  CCAGGGGCAGGGGCAACTTGTATGTCCTTCCCTAATCCATGCTAGAACGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGCAGGGGCAACTTGTATGTCCTTCCCTAATCCATGCTAGAACGT  300

seq1  TAAAACTGATTGAGTAGTGAAACTTACTCTTCAACCTTTAACTTTACCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGATTGAGTAGTGAAACTTACTCTTCAACCTTTAACTTTACCGG  350

seq1  GTCTATGATGTGTCTGATGCTGTACAAACAGCACAATCTGATCCATGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGATGTGTCTGATGCTGTACAAACAGCACAATCTGATCCATGTTA  400

seq1  GCAGTCCATGCTTAGTCACCCTGCCCTCCTCTTGCTCTCTTGGAGATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCCATGCTTAGTCACCCTGCCCTCCTCTTGCTCTCTTGGAGATAAG  450

seq1  AATTC  455
      |||||
seq2  AATTC  455