BAC Information

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BAC

Clone NameB6Ng01-122F09
Chromosome5 (Build37)
Map Location 96,561,283 - 96,562,433
singlet/doubletsinglet
Overlap geneCnot6l
Upstream geneLOC100041296, LOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231
Downstream geneLOC100040559, Mrpl1, Fras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122F09.bB6Ng01-122F09.g
ACCDH925788DH925789
length1,158209
definitionDH925788|Mus musculus domesticus DNA, BAC clone: B6Ng01-122F09, 5' end.DH925789|Mus musculus domesticus DNA, BAC clone: B6Ng01-122F09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctagaacaaaaagatataaaaacaggtaaattctgaataaagcct
gaagttttgttactattactatatcaatgttggcttcttacttttaataa
acacaccatggaatataagactctaatgttggggaatttaagcagagttc
atataagaacttcacattaacttggcaactaatagtattataaaattaag
tttattagaaatagaagatcactttttcttttatgaattgccacagaaca
gattatatgtagaatgtgatcaggaccccacccccattggcattgtagta
ccaacagcaagacttaacttattcatacaactgaaaggaaactgagtaga
ttgctgaatgctcatcattccgatgggagcagatctcagcctgttggttt
taagatttctcagccttggcggcttactgacagtttggcccctagataca
attccttgtggtggatggtttttgtgtgtagtataggatgcttagtagca
tgcttggcttttacctagcagattccctgtatacttctttacttatatca
acctaaaatgccaaagtcctttgaggaaaagaattcctcccaactgaaat
tggtgtgtttaagttaatggaagtttctcttttacccatagcctcatcat
tgaatactttgtttttctattaagatgcaaaatcctagtttgacactttg
tatttgattatatacagcaggaaagagtctggtagaaagaaccctggata
gaggatagaaataaacattgagtttagttctataaacaagataacattgt
tcctttggaaactttgtgttcttcagtttccattcccatctctcatctaa
attttttttttaatgaaagttatatatacttaattaataacttcttgggt
ttggaagaaatggctcaactactaagaacacctggtctttctaaaggatt
acaagttgggttctagcacccagatcaggagctctcaggcacctctaact
acagtctcagaagactctttagcagttcaggctctgaaagcacctgcatt
tcaagggcactatacccacaccaatcttggaatatagaaacttacttaag
ggtaaaaaaacttaaaactatttgctttgcttttatgccaatttggtaaa
ttatcttt
atatgtgtgatatgtgagttcatatgtgttatatgtgagttcatatgtgt
gatatgtgagttcatatgtgtggtatgtgagtttatatgtatgatatgtg
aattcatatgtgtgatatgtgagttcatatgtgtgatatgtgagttcata
tgtgttgcctctagaaggtcttgtttccttggtgtcttttactccctact
aattctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_96561283_96562433
seq2: B6Ng01-122F09.b_49_1206 (reverse)

seq1  AAAGATAATTTTACAAAATTGCATAAAAGCAAAGC-AATAGTTTTAAGGT  49
      |||||||||||  |||| | ||||||||||||||| ||||||||||||  
seq2  AAAGATAATTTACCAAATTGGCATAAAAGCAAAGCAAATAGTTTTAAG--  48

seq1  TTATTTTACCTTTAGTTAAGTGTCTATA-TCCAAG-TTGGTGTGGGTAT-  96
      || ||||||| |||  ||||| |||||| |||||| ||||||||||||| 
seq2  TTTTTTTACCCTTAAGTAAGTTTCTATATTCCAAGATTGGTGTGGGTATA  98

seq1  GTGCCCATG-AATGCAGGTGCTTTCAGAGGCCTGAACTGCTAAAGAGTC-  144
      |||||| || |||||||||||||||||| |||||||||||||||||||| 
seq2  GTGCCCTTGAAATGCAGGTGCTTTCAGA-GCCTGAACTGCTAAAGAGTCT  147

seq1  TCTGGAGCTGTAGTTAGAGGTGCTTGAGAGCTACCTGATCTGGGTGCTAG  194
      ||||   |||||||||||||||| |||||||| |||||||||||||||| 
seq2  TCTGAGACTGTAGTTAGAGGTGCCTGAGAGCT-CCTGATCTGGGTGCTA-  195

seq1  GAACCAACCTTGT-ATCCTTTAG-AAGACCA-GTGTTCTTAGTAGTTGAG  241
      ||||| | ||||| ||||||||| ||||||| ||||||||||||||||||
seq2  GAACCCAACTTGTAATCCTTTAGAAAGACCAGGTGTTCTTAGTAGTTGAG  245

seq1  CCATCTC-TCCAAACCCAAGAAGTATTTAATTAAGTATATATAACTTTCA  290
      |||| || ||||||||||||||||  ||||||||||||||||||||||||
seq2  CCATTTCTTCCAAACCCAAGAAGTTATTAATTAAGTATATATAACTTTCA  295

seq1  TTAAAAAAAAAATTTAGATGAGAGATGGGAATGGAAACTGAAGAACACAA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAATTTAGATGAGAGATGGGAATGGAAACTGAAGAACACAA  345

seq1  AG-TTCCAAAGGAACAATGTTATCTTGTTTATAGAACTAAACTCAATGTT  389
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCAAAGGAACAATGTTATCTTGTTTATAGAACTAAACTCAATGTT  395

seq1  TATTTCTATCCTCTATCCAGGGTTCTTTCTACCAGACTCTTTCCTGCTGT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTATCCTCTATCCAGGGTTCTTTCTACCAGACTCTTTCCTGCTGT  445

seq1  ATATAATCAAATACAAAGTGTC-AACTAGGATTTTGCATCTTAATAGAAA  488
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATATAATCAAATACAAAGTGTCAAACTAGGATTTTGCATCTTAATAGAAA  495

seq1  AACAAAGTATTCAATGATGAGGCTATGGGTAAAAGAGAAACTTCCATTAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGTATTCAATGATGAGGCTATGGGTAAAAGAGAAACTTCCATTAA  545

seq1  CTTAAACACACCAATTTCAGTTGGGAGGAATTCTTTTCCTCAAAGGACTT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACACACCAATTTCAGTTGGGAGGAATTCTTTTCCTCAAAGGACTT  595

seq1  TGGCATTTTAGGTTGATATAAGTAAAGAAGTATACAGGGAATCTGCTAGG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTTTAGGTTGATATAAGTAAAGAAGTATACAGGGAATCTGCTAGG  645

seq1  TAAAAGCCAAGCATGCTACTAAGCATCCTATACTACACACAAAAACCATC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCCAAGCATGCTACTAAGCATCCTATACTACACACAAAAACCATC  695

seq1  CACCACAAGGAATTGTATCTAGGGGCCAAACTGTCAGTAAGCCGCCAAGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACAAGGAATTGTATCTAGGGGCCAAACTGTCAGTAAGCCGCCAAGG  745

seq1  CTGAGAAATCTTAAAACCAACAGGCTGAGATCTGCTCCCATCGGAATGAT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAATCTTAAAACCAACAGGCTGAGATCTGCTCCCATCGGAATGAT  795

seq1  GAGCATTCAGCAATCTACTCAGTTTCCTTTCAGTTGTATGAATAAGTTAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTCAGCAATCTACTCAGTTTCCTTTCAGTTGTATGAATAAGTTAA  845

seq1  GTCTTGCTGTTGGTACTACAATGCCAATGGGGGTGGGGTCCTGATCACAT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCTGTTGGTACTACAATGCCAATGGGGGTGGGGTCCTGATCACAT  895

seq1  TCTACATATAATCTGTTCTGTGGCAATTCATAAAAGAAAAAGTGATCTTC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATATAATCTGTTCTGTGGCAATTCATAAAAGAAAAAGTGATCTTC  945

seq1  TATTTCTAATAAACTTAATTTTATAATACTATTAGTTGCCAAGTTAATGT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAATAAACTTAATTTTATAATACTATTAGTTGCCAAGTTAATGT  995

seq1  GAAGTTCTTATATGAACTCTGCTTAAATTCCCCAACATTAGAGTCTTATA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCTTATATGAACTCTGCTTAAATTCCCCAACATTAGAGTCTTATA  1045

seq1  TTCCATGGTGTGTTTATTAAAAGTAAGAAGCCAACATTGATATAGTAATA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGGTGTGTTTATTAAAAGTAAGAAGCCAACATTGATATAGTAATA  1095

seq1  GTAACAAAACTTCAGGCTTTATTCAGAATTTACCTGTTTTTATATCTTTT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAAACTTCAGGCTTTATTCAGAATTTACCTGTTTTTATATCTTTT  1145

seq1  TGTTCTAGAATTC  1151
      |||||||||||||
seq2  TGTTCTAGAATTC  1158