BAC Information

Click to search

BAC

Clone NameB6Ng01-122L04
Chromosome5 (Build37)
Map Location 95,240,733 - 95,369,496
singlet/doubletdoublet
Overlap geneLOC100041179, LOC624655
Upstream geneEG665802, LOC100040408, LOC100040981, EG622719, LOC100041003, BC061212, EG622744, LOC100041032, LOC100041042, LOC624421, AA792892, LOC665521, LOC665551, LOC100041102, LOC665560, LOC100041115, LOC624507, LOC621203, LOC100041153, LOC665499, LOC624698
Downstream geneLOC100041166, LOC665469, LOC622894, EG666121, LOC666125, EG666133, LOC100041296, LOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122L04.bB6Ng01-122L04.g
ACCDH926056DH926057
length1,0951,118
definitionDH926056|Mus musculus domesticus DNA, BAC clone: B6Ng01-122L04, 5' end.DH926057|Mus musculus domesticus DNA, BAC clone: B6Ng01-122L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,368,394 - 95,369,496)(95,240,733 - 95,241,870)
sequence
gaattcagggaatcttttgatatagtcagaggaaggattgagggagccag
atgggtcaagtataccagaaggagacctagagagccaagtcacctggacc
cattgggcattcatagagattgagccaccaaccaaaaagcatgcatggtc
cagacctagggcccctacaaatgtggagcagatgtgaagcttggtcttaa
tgtgtgtcacctaaaaattagatctggggttgtctcttattgaattttgt
tgccttccatggaatctatgggaacctagtggggctatcttatttggcca
cagtaggagaggatgcatttgttcctgatgcaacttggtttgccagggtg
gtgtggtagctgatggggttgcatagtgaatacctttccttctcttggga
gaatgggaggaggaaatgatgagaaagggtcgaagggtaggcctgggagg
aaagggaaggcaggatgtgatcaaatggtaaagtgcataaatgaatgagt
gaaaataaacagaaatgataaatagggagctagacatgtttaacatttaa
actttttcagctgcaaactgaatagaaatgtgttctccctgaaatatgtt
agcaacctatgttttcatggtctacttataattaaactaaatagtgatta
aatatgcaaaaattttggtataagataaagttgtaaggattgttgtgaag
ctttgtggctatagttagtatgtacttataactgataattagcatatgta
aattataaacacacaatgttgttcagtcagacatcatcctacagatacaa
ataggtagggttatatttattttagtttcttatctcccccctcttcacat
tgtttctttctcctctcttatcagtatatgcttaaaatttatactataaa
attgttcagttttttattcttttgaattttatttacttatttgtcacagc
ttttattccattcctgagcagggatagatgaagtcagagagatcggaaga
aagtgcttagggattctagctccattgtcaggaggaagttttggggattt
gatatagtattagaataagtagatagatgactaaaatttctcctc
gaattcaggagagttagtttctgaattgagttaaagttgaaggtgtggta
gtttgaatatttgttactagaaagcacaacttgctctcacctttgaggat
tccatttgctgactcactaaagctcaaagagcaaattcttggacatattt
aatgcctttagccacagttttgtaccttttcgccaacttcactgaaaact
tgtagtgttctactctgggtgctaagagccatttatggggctgggcctgg
tggatcataccttcaataccagcatcataaggcagagaggtaaaaagagc
tctgagtattgtagggtaaccttgtctgcaggtttcaagcacagccaaag
ctacacagagaaactgtccaaaaccaaaaccaagcaaacaacaacagaaa
aaaaaaacatttacataatggttaactttgtcactatggtgcagtttaga
aatcaaacatcaaggaaatatacctgatggcgttgtgtaaagaggttttt
gcagatgctccaatctgaatgtggaggtgctgtttcataggctgagatca
tcatcccatgtgctggtgtcataagagaataagaaagggagtgcaaactg
actatgactctctgctcctgacggtgcacatatcctaaccacttgcctct
cactcttgacaccacgtcctcctttcaatgatggacagtattcccttgaa
ctttgagacaacgaagatccttttccaggtaaaactgcttcctttgggaa
tttcttcacagcaagtgtcactggtcttactaggaatcaggcagaggtat
tgggtttcttaacagatgttaaaggaaagctactttctcttgggcataga
atatgagagttgagttatacacctgaccctgaaagaccctgtcattttaa
tctgcaccaaagattagaacattacattatatatccctttatctatgagt
atcccacaaagagaccatcccacagaggctggttcacctgaagaattcca
ggacatggaagatgatcacccatatgagcgcctggtctacaccttcccta
ctaccaagtgtcagtcatcctcactgccaactagctgtgcctgtccacct
caaagttgtaaaatgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_95368394_95369496
seq2: B6Ng01-122L04.b_48_1141 (reverse)

seq1  GAGGAGAAATTCTATGTCATTCTATCTACTTATCTAAATAACTAATATCA  50
      ||||||||||| || |||| |||||||||||||   ||| ||| ||||| 
seq2  GAGGAGAAATTTTA-GTCA-TCTATCTACTTATTCTAAT-ACT-ATATC-  45

seq1  AAATCCACAAAACTTCCTCCTGAC-ATGGAGCTAGAATCCCTTAGCACTT  99
      |||||| ||||||||||||||||| ||||||||||||||||| |||||||
seq2  AAATCCCCAAAACTTCCTCCTGACAATGGAGCTAGAATCCCTAAGCACTT  95

seq1  TCCTTCCGGTCTCTCTTGACTTCATCTTATCCCTGCTCAGGAATGGAATA  149
      | |||||| |||||| |||||||||| |||||||||||||||||||||||
seq2  T-CTTCCGATCTCTC-TGACTTCATC-TATCCCTGCTCAGGAATGGAATA  142

seq1  AAAGCTGTGACAAATAAGTAAATAAAATTCAAAAGAATAAAAAACCTGAA  199
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAAGCTGTGACAAATAAGTAAATAAAATTCAAAAGAATAAAAAA-CTGAA  191

seq1  CAATTTTTATAGTATAAATTTTAAGCATATACTGATAAGAGAGGAGAAAG  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAA-TTTTATAGTATAAATTTTAAGCATATACTGATAAGAGAGGAGAAAG  240

seq1  AAACAATGTGAAGAGGGGGGAGATAAGAAACTAAAATAAATATAACCCTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGTGAAGAGGGGGGAGATAAGAAACTAAAATAAATATAACCCTA  290

seq1  CCTATTTGTATCTGTAGGATGATGTCTGACTGAACAACATTGTGTGTTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTGTATCTGTAGGATGATGTCTGACTGAACAACATTGTGTGTTTA  340

seq1  TAATTTACATATGCTAATTATCAGTTATAAGTACATACTAACTATAGCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTACATATGCTAATTATCAGTTATAAGTACATACTAACTATAGCCA  390

seq1  CAAAGCTTCACAACAATCCTTACAACTTTATCTTATACCAAAATTTTTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTTCACAACAATCCTTACAACTTTATCTTATACCAAAATTTTTGC  440

seq1  ATATTTAATCACTATTTAGTTTAATTATAAGTAGACCATGAAAACATAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAATCACTATTTAGTTTAATTATAAGTAGACCATGAAAACATAGG  490

seq1  TTGCTAACATATTTCAGGGAGAACACATTTCTATTCAGTTTGCAGCTGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAACATATTTCAGGGAGAACACATTTCTATTCAGTTTGCAGCTGAA  540

seq1  AAAGTTTAAATGTTAAACATGTCTAGCTCCCTATTTATCATTTCTGTTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTAAATGTTAAACATGTCTAGCTCCCTATTTATCATTTCTGTTTA  590

seq1  TTTTCACTCATTCATTTATGCACTTTACCATTTGATCACATCCTGCCTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTCATTCATTTATGCACTTTACCATTTGATCACATCCTGCCTTC  640

seq1  CCTTTCCTCCCAGGCCTACCCTTCGACCCTTTCTCATCATTTCCTCCTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTCCCAGGCCTACCCTTCGACCCTTTCTCATCATTTCCTCCTCC  690

seq1  CATTCTCCCAAGAGAAGGAAAGGTATTCACTATGCAACCCCATCAGCTAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCCCAAGAGAAGGAAAGGTATTCACTATGCAACCCCATCAGCTAC  740

seq1  CACACCACCCTGGCAAACCAAGTTGCATCAGGAACAAATGCATCCTCTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCACCCTGGCAAACCAAGTTGCATCAGGAACAAATGCATCCTCTCC  790

seq1  TACTGTGGCCAAATAAGATAGCCCCACTAGGTTCCCATAGATTCCATGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGGCCAAATAAGATAGCCCCACTAGGTTCCCATAGATTCCATGGA  840

seq1  AGGCAACAAAATTCAATAAGAGACAACCCCAGATCTAATTTTTAGGTGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACAAAATTCAATAAGAGACAACCCCAGATCTAATTTTTAGGTGAC  890

seq1  ACACATTAAGACCAAGCTTCACATCTGCTCCACATTTGTAGGGGCCCTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTAAGACCAAGCTTCACATCTGCTCCACATTTGTAGGGGCCCTAG  940

seq1  GTCTGGACCATGCATGCTTTTTGGTTGGTGGCTCAATCTCTATGAATGCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGACCATGCATGCTTTTTGGTTGGTGGCTCAATCTCTATGAATGCC  990

seq1  CAATGGGTCCAGGTGACTTGGCTCTCTAGGTCTCCTTCTGGTATACTTGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGTCCAGGTGACTTGGCTCTCTAGGTCTCCTTCTGGTATACTTGA  1040

seq1  CCCATCTGGCTCCCTCAATCCTTCCTCTGACTATATCAAAAGATTCCCTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTGGCTCCCTCAATCCTTCCTCTGACTATATCAAAAGATTCCCTG  1090

seq1  AATT  1103
      ||||
seq2  AATT  1094

seq1: chr5_95240733_95241870
seq2: B6Ng01-122L04.g_67_1184

seq1  GAATTCAGGAGAGTTAGTTTCTGAATTGAGTTAAAGTTGAAGGTGTGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGAGTTAGTTTCTGAATTGAGTTAAAGTTGAAGGTGTGGTA  50

seq1  GTTTGAATATTTGTTACTAGAAAGCACAACTTGCTCTCACCTTTGAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAATATTTGTTACTAGAAAGCACAACTTGCTCTCACCTTTGAGGAT  100

seq1  TCCATTTGCTGACTCACTAAAGCTCAAAGAGCAAATTCTTGGACATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTGCTGACTCACTAAAGCTCAAAGAGCAAATTCTTGGACATATTT  150

seq1  AATGCCTTTAGCCACAGTTTTGTACCTTTTCGCCAACTTCACTGAAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTTAGCCACAGTTTTGTACCTTTTCGCCAACTTCACTGAAAACT  200

seq1  TGTAGTGTTCTACTCTGGGTGCTAAGAGCCATTTATGGGGCTGGGCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGTTCTACTCTGGGTGCTAAGAGCCATTTATGGGGCTGGGCCTGG  250

seq1  TGGATCATACCTTCAATACCAGCATCATAAGGCAGAGAGGTAAAAAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCATACCTTCAATACCAGCATCATAAGGCAGAGAGGTAAAAAGAGC  300

seq1  TCTGAGTATTGTAGGGTAACCTTGTCTGCAGGTTTCAAGCACAGCCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTATTGTAGGGTAACCTTGTCTGCAGGTTTCAAGCACAGCCAAAG  350

seq1  CTACACAGAGAAACTGTCCAAAACCAAAACCAAGCAAACAACAACAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGAGAAACTGTCCAAAACCAAAACCAAGCAAACAACAACAGAAA  400

seq1  AAAAAAACATTTACATAATGGTTAACTTTGTCACTATGGTGCAGTTTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACATTTACATAATGGTTAACTTTGTCACTATGGTGCAGTTTAGA  450

seq1  AATCAAACATCAAGGAAATATACCTGATGGCGTTGTGTAAAGAGGTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACATCAAGGAAATATACCTGATGGCGTTGTGTAAAGAGGTTTTT  500

seq1  GCAGATGCTCCAATCTGAATGTGGAGGTGCTGTTTCATAGGCTGAGATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGCTCCAATCTGAATGTGGAGGTGCTGTTTCATAGGCTGAGATCA  550

seq1  TCATCCCATGTGCTGGTGTCATAAGAGAATAAGAAAGGGAGTGCAAACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCATGTGCTGGTGTCATAAGAGAATAAGAAAGGGAGTGCAAACTG  600

seq1  ACTATGACTCTCTGCTCCTGACGGTGCACATATCCTAACCACTTGCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGACTCTCTGCTCCTGACGGTGCACATATCCTAACCACTTGCCTCT  650

seq1  CACTCTTGACACCACGTCCTCCTTTCAATGATGGACAGTATTCCCTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTGACACCACGTCCTCCTTTCAATGATGGACAGTATTCCCTTGAA  700

seq1  CTTTGAGACAACGAAGATCCTTTTCCAGGTAAAACTGCTTCCTTTGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGACAACGAAGATCCTTTTCCAGGTAAAACTGCTTCCTTTGGGAA  750

seq1  TTTCTTCACAGCAAGTGTCACTGGTCTTACTAGGAATCAGGCAGAGGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCACAGCAAGTGTCACTGGTCTTACTAGGAATCAGGCAGAGGTAT  800

seq1  TGGGTTTCTTAACAGATGTTAAAGGAAAGCTACTTTCTCTTGGGCATAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTCTTAACAGATGTTAAAGGAAAGCTACTTTCTCTTGGGCATAGA  850

seq1  ATATGAGAGTTGAGTTATACACCTGACCCTGAAAGAACCTGTCATTTTAA  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATATGAGAGTTGAGTTATACACCTGACCCTGAAAGACCCTGTCATTTTAA  900

seq1  TCTGCACCAAAGATTAGAACATTACATTATATTATCCCTTTATCTTATGA  950
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  TCTGCACCAAAGATTAGAACATTACATTATA-TATCCCTTTATC-TATGA  948

seq1  GTTAATCCCACAAAGAAGACCATCCCACAGGAGGGCTGGTTCACCTGAAG  1000
      ||  ||||||||||| ||||||||||||||   |||||||||||||||||
seq2  GT--ATCCCACAAAG-AGACCATCCCACAG--AGGCTGGTTCACCTGAAG  993

seq1  ATATTCCAAGGACATGGGAAGAATGATCAACCCCATAATGAGCGCCTGTT  1050
      | ||||| ||||||| ||||| |||||||  ||||| ||||||||||| |
seq2  A-ATTCC-AGGACAT-GGAAG-ATGATCA--CCCAT-ATGAGCGCCTGGT  1036

seq1  CTTACA-CTTCCCTACTACCAGTTGGTCAGTCATCTTCACTGCCAAACTA  1099
      | |||| ||||||||||||||  | |||||||||| |||||||| |||||
seq2  C-TACACCTTCCCTACTACCAAGT-GTCAGTCATCCTCACTGCC-AACTA  1083

seq1  GCCTGTTGCCTTGGTTCCAACTCAAAGTTGT-AAATGTAG  1138
      | ||| |||||    |||| ||||||||||| ||||||||
seq2  G-CTG-TGCCT---GTCCACCTCAAAGTTGTAAAATGTAG  1118