BAC Information

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BAC

Clone NameB6Ng01-123D02
Chromosome5 (Build37)
Map Location 145,751,316 - 145,752,438
singlet/doubletsinglet
Overlap geneAW146299
Upstream geneAU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1
Downstream geneEG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065, Cyp3a41, Cyp3a44, Cyp3a11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123D02.bB6Ng01-123D02.g
ACCDH926426DH926427
length7581,106
definitionDH926426|Mus musculus domesticus DNA, BAC clone: B6Ng01-123D02, 5' end.DH926427|Mus musculus domesticus DNA, BAC clone: B6Ng01-123D02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctagaagtctttaagttattagttaattaattagctatttaacta
cttaatgtcttccctaacttagtggtcattgagcctagagttgttcagtt
ttcatggtcttgtagattttctgctgttcctgttgttgacatccagcttt
agtccatggtgatctggtaagatgggtggggatatttcagttctcttata
tctgttgaggcttgctttgtgagcatatggtcaattttggaaaggttccc
tgaggttctgagaaggtacattgttctgtaggtgtttgttagttccatct
gatttataatggctgtcagtttctttatttctcttggtttctgtcttgat
gacctgctggtgtgttgaaatctcctgctattaatatgtgggttttgatg
tgtggtttaagccttagtaacgtttcttttacaaatgtgggtaccctgag
atttggggcatgaatgttcaaaattgagatgtcatgttggtggatttttc
ctttgagtatgaagtgtttttcctcatctcatttgaataattttgatttg
taatctcatttgatagaaaggctacagaagtctgcttcttgggtccattt
acttagaaaccttttttgagcccttttctcccgaggtcacatgtttcttt
gttgttgaggtatgttcttgtgtgcagaagaatgatgcatcctgagttcc
acccattctgttagcctgggtctttttttttttttttttttccaaacagg
gtttctct
gaattcaaagtaagaaagcatttaataaacatcaaagcctagatgagcat
tacaggactctaggaactgctgagacagggtcttacgcagtccaggccat
ccttgaacttggctatgtagctgagcacagtaacctcaatccctagtcct
cctacctccacctccacctccccaggtgtgggcttggcaagtccactcaa
cgcagtcattaaaggaatccatggtatcagcgcatagcatttctctcttc
acctttgtcctgaccgtccttggggaatgacattatcctgtccaggcaca
gtgccactcaggaacgatttatagttctttccaatccaggcctgtctttc
ttctatgactttaacccctggtggtttactggatcttaaacaattgatat
agggaggctggagaaatgggtctgtggctaagggcatttcccaaaggaca
caggttcagttcccagctcccacaaggtagcccacagctatctctaattc
cagttccagaggattccatgacctcttctggtccccgtggccctgcattc
acgtggtgtacagacatacacgcaggcaaaatatccattcggataaaata
aaagtaaaccgatcttttaaaataaatctgatgcagaagtgggcgtggcg
gggtgtgactctaatctcagcatgtcagaggtctcaggaagctcaagtgt
taccatgtgtcctatgtaagtcatacagggagaccgtgtgttcagtgtaa
gttatgtagggagagcctgtgtcaaatctcaaaaggaaaagcatcaaaac
caaaaatgtgtctggagagatgtttaagagcaaaaacgcctcctacagag
gtgatcttatgtgaggtggattcccacacacatcaggggctcagaaccac
ctgccactccagtccagggactctggtggctctgggctctgttggcacct
gtactcatatgcacatatccacatacgacaatagcacacaatgaaacaac
acccctcggcctcgttgttttgttgtgagctctgaggacttctctgctcg
tctgccaagacctcagtcctctccctccctcatctcatcttctggccttg
ctatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_145751316_145752438
seq2: B6Ng01-123D02.g_68_1173

seq1  GAATTCAAAGTAAGAAAGCATTTAATAAACATCAAAGCCTAGATGAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTAAGAAAGCATTTAATAAACATCAAAGCCTAGATGAGCAT  50

seq1  TACAGGACTCTAGGAACTGCTGAGACAGGGTCTTACGCAGTCCAGGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGACTCTAGGAACTGCTGAGACAGGGTCTTACGCAGTCCAGGCCAT  100

seq1  CCTTGAACTTGGCTATGTAGCTGAGCACAGTAACCTCAATCCCTAGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACTTGGCTATGTAGCTGAGCACAGTAACCTCAATCCCTAGTCCT  150

seq1  CCTACCTCCACCTCCACCTCCCCAGGTGTGGGCTTGGCAAGTCCACTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTCCACCTCCACCTCCCCAGGTGTGGGCTTGGCAAGTCCACTCAA  200

seq1  CGCAGTCATTAAAGGAATCCATGGTATCAGCGCATAGCATTTCTCTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTCATTAAAGGAATCCATGGTATCAGCGCATAGCATTTCTCTCTTC  250

seq1  ACCTTTGTCCTGACCGTCCTTGGGGAATGACATTATCCTGTCCAGGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGTCCTGACCGTCCTTGGGGAATGACATTATCCTGTCCAGGCACA  300

seq1  GTGCCACTCAGGAACGATTTATAGTTCTTTCCAATCCAGGCCTGTCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACTCAGGAACGATTTATAGTTCTTTCCAATCCAGGCCTGTCTTTC  350

seq1  TTCTATGACTTTAACCCCTGGTGGTTTACTGGATCTTAAACAATTGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGACTTTAACCCCTGGTGGTTTACTGGATCTTAAACAATTGATAT  400

seq1  AGGGAGGCTGGAGAAATGGGTCTGTGGCTAAGGGCATTTCCCAAAGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGCTGGAGAAATGGGTCTGTGGCTAAGGGCATTTCCCAAAGGACA  450

seq1  CAGGTTCAGTTCCCAGCTCCCACAAGGTAGCCCACAGCTATCTCTAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCAGTTCCCAGCTCCCACAAGGTAGCCCACAGCTATCTCTAATTC  500

seq1  CAGTTCCAGAGGATTCCATGACCTCTTCTGGTCCCCGTGGCCCTGCATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCAGAGGATTCCATGACCTCTTCTGGTCCCCGTGGCCCTGCATTC  550

seq1  ACGTGGTGTACAGACATACACGCAGGCAAAATATCCATTCGGATAAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGTGTACAGACATACACGCAGGCAAAATATCCATTCGGATAAAATA  600

seq1  AAAGTAAACCGATCTTTTAAAATAAATCTGATGCAGAAGTGGGCGTGGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAACCGATCTTTTAAAATAAATCTGATGCAGAAGTGGGCGTGGCG  650

seq1  GGGTGTGACTCTAATCTCAGCATGTCAGAGGTCTCAGGAAGCTCAAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGACTCTAATCTCAGCATGTCAGAGGTCTCAGGAAGCTCAAGTGT  700

seq1  TACCATGTGTCCTATGTAAGTCATACAGGGAGACCGTGTGTTCAGTGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGTGTCCTATGTAAGTCATACAGGGAGACCGTGTGTTCAGTGTAA  750

seq1  GTTATGTAGGGAGAGCCTGTGTCAAATCTCAAAAGGAAAAGCATCAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTAGGGAGAGCCTGTGTCAAATCTCAAAAGGAAAAGCATCAAAAC  800

seq1  CAAAAATGTGTCTGGAGAGATGTTTAAGAGCAAAAACGCCTCCTACAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGTGTCTGGAGAGATGTTTAAGAGCAAAAACGCCTCCTACAGAG  850

seq1  GTGATCCTATGTGAGGTGGATTCCCACACACATCAGGGGCTCAGAACCAC  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTTATGTGAGGTGGATTCCCACACACATCAGGGGCTCAGAACCAC  900

seq1  CTGCCACTCCAGTCCAGGGGACTCTGGTGGCTCTGGCCTCTGTTGGCACC  950
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  CTGCCACTCCAGTCCA-GGGACTCTGGTGGCTCTGGGCTCTGTTGGCACC  949

seq1  TGTACTCATATGCACATATCCACATACAGACACATAGCCACACAAATGAA  1000
      ||||||||||||||||||||||||||| |||| |||| ||||| ||||||
seq2  TGTACTCATATGCACATATCCACATAC-GACA-ATAG-CACAC-AATGAA  995

seq1  ACAAACAACCCCTCGG-CTCGTTTGTTCTGTTGTGAAGCTTCTGAGGGCT  1049
      ||||   ||||||||| |||| ||||| ||||||| ||| ||||||| | 
seq2  ACAA--CACCCCTCGGCCTCG-TTGTTTTGTTGTG-AGC-TCTGAGGAC-  1039

seq1  TTCTCTGCTCGTCTGCCCCAGACCTCAGTCCTCTCCCTCTCCCTCCATCT  1099
      ||||||||||||||| || |||||||||||||||||  |||||| |||||
seq2  TTCTCTGCTCGTCTG-CCAAGACCTCAGTCCTCTCC--CTCCCT-CATCT  1085

seq1  TCCATCTTCTTGCCCTTGCTATGC  1123
        ||||||| || |||||||||||
seq2  --CATCTTC-TGGCCTTGCTATGC  1106