BAC Information

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BAC

Clone NameB6Ng01-124A05
Chromosome5 (Build37)
Map Location 90,304,228 - 90,413,224
singlet/doubletdoublet
Overlap geneAdamts3
Upstream geneSlc4a4, Gc, LOC622870, Npffr2, LOC631105
Downstream geneEG665733, Cox18, Ankrd17, Alb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124A05.bB6Ng01-124A05.g
ACCDH927029DH927030
length1,183857
definitionDH927029|Mus musculus domesticus DNA, BAC clone: B6Ng01-124A05, 5' end.DH927030|Mus musculus domesticus DNA, BAC clone: B6Ng01-124A05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,304,228 - 90,305,423)(90,412,371 - 90,413,224)
sequence
gaattcagtgacttttgcaagaagtctgtaatgttatggaaaacaaaagc
aagtctactaaagcagtttttcttcatacaaacacctattatcacaccag
ttattccaactagatcgcataccaactatgctttgcatgtacaggttaac
cattccttatccaaaatgcttagaactgtaagatttatgctttcagactt
tggaattggatctaaaagactgcaattaaaggaacagtgcataaaaaaat
aatgtctgagctgtctgtcaatcgttggggctttgggagattatcagagt
tccagagaacatagaaactgtcaagaagatcaccacagtgcacacatgta
acatatatgtaataagaataaaagaatgacagctttcagggagaagcacc
cgtgtagtttaggaataacttgagtaagttgagaaatcaaagttgatctc
tattccattacaggattccgaaggagaagccccaccactgatagcaatcc
tctctccaaaagaatgagttccctggaagttatccctgtacacagtccaa
gcgatagaaccaaattcttcatctctgaaccactcagaactttaccaggc
catttggaaccgtccctaatggatttccaaggcagtctgagttggcttct
cacaagcaaagaatgtttaaagctcgtcatcctgaggcaggggtgacctt
gagggttttcttaacatttctgagcactaaaggacgatttgagacagtaa
caagagagccacagaagcaaaggcaagaaaattttcagctccacggcaac
agcaatcttcacttacaagggagaataggcaaatctggcagagattgcaa
gcagatagtagggaaaacctaagcagaccttccaaagctacacataggat
tcaactggccatagacttcttaagcatgggtggaaaagcaagcgaaatga
acaagccaaggtcccgtgctctgcggtataaatgtagtcacaggatgcct
catagcacctgaatgataactggggaccatggtatattcaccatttcttg
gggactccctaacctgaggaaggcactgacaaaagcatttttttagaaat
ccgaagaatgattctctatgtatatggcctgcctgagacacatagtactg
agtatacattcctgggtaccaaggtgtggcttt
gaattccatccattgaaacagacgtcacaatcagtaagagagtggttggt
tccttccttaaacaatcatggcatgattacaccagtgggccctactagtg
gaaggtgatggcagctgagttaggaagaagttttgttcatttttttcctt
tgactagggcattggtaggttttttacacttcagcagatgaccccacatc
caactgcatataggtagcactaactggacttaatgagctatttaaaaatg
ctgtgaatttgagagaggggagcattggagggcgctgtggggagttgaag
agtggtggtggtcagtatgatcaagatacattgtacgtccatataaaata
tccaaagaataaaaagcaaaaaaaattttccaccaatattctaatttctt
tcagtaataagcaaagggatatcagttgacccattttgaattactgaatt
tattgtttttctatttttagactttaaacagcagttgagaagatgtgaat
agtatagaggctgtaattgaaaagtttattatatttatagtcattacagt
atgaataacatttgaaagttggggaaatatttcttttcaatttaaataaa
atcatcatctttgtttaaatcaaaaactttctcatgttactgatggacaa
gcgacattccaacaaatgctattatttttatctttgaaatgaagccacta
acctttagtcatgtttaagtcatggctatcatcaactacaattcgtgctt
gaaggtgattagtgatactatataaaaatagaatagggatttaatctttt
tttctagtatgactgataaaattcattttattaataaattttgctttcat
cttcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_90304228_90305423
seq2: B6Ng01-124A05.b_41_1223

seq1  GAATTCAGTGACTTTTGCAAGAAGTCTGTAATGTTATGGAAAACAAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGACTTTTGCAAGAAGTCTGTAATGTTATGGAAAACAAAAGC  50

seq1  AAGTCTACTAAAGCAGTTTTTCTTCATACAAACACCTATTATCACACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTACTAAAGCAGTTTTTCTTCATACAAACACCTATTATCACACCAG  100

seq1  TTATTCCAACTAGATCGCATACCAACTATGCTTTGCATGTACAGGTTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCAACTAGATCGCATACCAACTATGCTTTGCATGTACAGGTTAAC  150

seq1  CATTCCTTATCCAAAATGCTTAGAACTGTAAGATTTATGCTTTCAGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTATCCAAAATGCTTAGAACTGTAAGATTTATGCTTTCAGACTT  200

seq1  TGGAATTGGATCTAAAAGACTGCAATTAAAGGAACAGTGCATAAAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTGGATCTAAAAGACTGCAATTAAAGGAACAGTGCATAAAAAAAT  250

seq1  AATGTCTGAGCTGTCTGTCAATCGTTGGGGCTTTGGGAGATTATCAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGAGCTGTCTGTCAATCGTTGGGGCTTTGGGAGATTATCAGAGT  300

seq1  TCCAGAGAACATAGAAACTGTCAAGAAGATCACCACAGTGCACACATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGAACATAGAAACTGTCAAGAAGATCACCACAGTGCACACATGTA  350

seq1  ACATATATGTAATAAGAATAAAAGAATGACAGCTTTCAGGGAGAAGCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATGTAATAAGAATAAAAGAATGACAGCTTTCAGGGAGAAGCACC  400

seq1  CGTGTAGTTTAGGAATAACTTGAGTAAGTTGAGAAATCAAAGTTGATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTAGTTTAGGAATAACTTGAGTAAGTTGAGAAATCAAAGTTGATCTC  450

seq1  TATTCCATTACAGGATTCCGAAGGAGAAGCCCCACCACTGATAGCAATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCATTACAGGATTCCGAAGGAGAAGCCCCACCACTGATAGCAATCC  500

seq1  TCTCTCCAAAAGAATGAGTTCCCTGGAAGTTATCCCTGTACACAGTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCAAAAGAATGAGTTCCCTGGAAGTTATCCCTGTACACAGTCCAA  550

seq1  GCGATAGAACCAAATTCTTCATCTCTGAACCACTCAGAACTTTACCAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATAGAACCAAATTCTTCATCTCTGAACCACTCAGAACTTTACCAGGC  600

seq1  CATTTGGAACCGTCCCTAATGGATTTCCAAGGCAGTCTGAGTTGGCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGAACCGTCCCTAATGGATTTCCAAGGCAGTCTGAGTTGGCTTCT  650

seq1  CACAAGCAAAGAATGTTTAAAGCTCGTCATCCTGAGGCAGGGGTGACCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCAAAGAATGTTTAAAGCTCGTCATCCTGAGGCAGGGGTGACCTT  700

seq1  GAGGGTTTTCTTAACATTTCTGAGCACTAAAGGACGATTTGAGACAGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTTTCTTAACATTTCTGAGCACTAAAGGACGATTTGAGACAGTAA  750

seq1  CAAGAGAGCCACAGAAGCAAAGGCAAGAAAATTTTCAGCTCCACGGCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAGCCACAGAAGCAAAGGCAAGAAAATTTTCAGCTCCACGGCAAC  800

seq1  AGCAATCTTCACTTACAAGGGAGAATAGGCAAATCTGGCAGAGATTGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCTTCACTTACAAGGGAGAATAGGCAAATCTGGCAGAGATTGCAA  850

seq1  GCAGATAGTAGGGAAAACCTAAGCAGACCTTCCAAAGCTACACATAGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATAGTAGGGAAAACCTAAGCAGACCTTCCAAAGCTACACATAGGAT  900

seq1  TCAACTGGCCATAGACTTCTTAAGCATGGGTGGAAAAGCAAGCGAAATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGGCCATAGACTTCTTAAGCATGGGTGGAAAAGCAAGCGAAATGA  950

seq1  ACAAGCCAAGGTCCCCGTGCTCTGCGGTATAAATGTAGTCACAGGATGCC  1000
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCAAGGT-CCCGTGCTCTGCGGTATAAATGTAGTCACAGGATGCC  999

seq1  TCAATAGCA-CTGAATGATTAACTGGTGACCATTGTCATATTCACCATTT  1049
      || |||||| |||||||| ||||||| |||||| || |||||||||| ||
seq2  TC-ATAGCACCTGAATGA-TAACTGGGGACCATGGT-ATATTCACCA-TT  1045

seq1  TCTTGGGGACTCACTAAACCTGAAGAAAGGCACTGAACAAAAGCATTTAT  1099
      |||||||||||| || |||||| || ||||||||| |||||||||||| |
seq2  TCTTGGGGACTCCCT-AACCTG-AGGAAGGCACTG-ACAAAAGCATTTTT  1092

seq1  TTAAAGAAATCCAGAAGATAGA-TCTCTATGTAATAATGCCCTGCCTGAG  1148
      ||  |||||||| |||||  || ||||||||||   ||| ||||||||||
seq2  TT--AGAAATCC-GAAGAATGATTCTCTATGTA--TATGGCCTGCCTGAG  1137

seq1  ACAACTAGTCACTGAGTAACACATCTCTGGGGTACCAA-GTGTGGCTTT  1196
      |||  |||| ||||||| | |||| ||  ||||||||| ||||||||||
seq2  ACACATAGT-ACTGAGT-ATACAT-TCCTGGGTACCAAGGTGTGGCTTT  1183

seq1: chr5_90412371_90413224
seq2: B6Ng01-124A05.g_69_925 (reverse)

seq1  TCTGAAGATGAAAGAAAAATTTATTAATAAAATGAATTTTTATCAGTCAT  50
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  TCTGAAGATGAAAGCAAAATTTATTAATAAAATGAA-TTTTATCAGTCAT  49

seq1  ACTAG-AAAAAAGATTAAATCCCTATTCTATTTTTATATAGTATCACTAA  99
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  ACTAGAAAAAAAGATTAAATCCCTATTCTATTTTTATATAGTATCACT-A  98

seq1  ATCACCTTCAAGCAAGAATTGTAGTTGATGATTAGCCATGACTTAAACAT  149
      |||||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  ATCACCTTCAAGCACGAATTGTAGTTGATGA-TAGCCATGACTTAAACAT  147

seq1  GACTAAAGGTTAGTGGCTTCATTTCAAAGATAAAAATAATAGCATTTGTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAGGTTAGTGGCTTCATTTCAAAGATAAAAATAATAGCATTTGTT  197

seq1  GGAATGTCGCTTGTCCATCAGTAACATGAGAAAGTTTTTGATTTAA--CA  247
      ||||||||||||||||||||||||||||||||||||||||||||||   |
seq2  GGAATGTCGCTTGTCCATCAGTAACATGAGAAAGTTTTTGATTTAAACAA  247

seq1  AGATGATGATTTTATTT-AATTG-AAAGAAATATTTCCCCAACTTTC-AA  294
      ||||||||||||||||| ||||| ||||||||||||||||||||||| ||
seq2  AGATGATGATTTTATTTAAATTGAAAAGAAATATTTCCCCAACTTTCAAA  297

seq1  TGTTATTCATACTGTAATGACTATAAATATAATAAACTTTTCAATTACAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTCATACTGTAATGACTATAAATATAATAAACTTTTCAATTACAG  347

seq1  CCTCTATACTATTCACATCTTCTCAACTGCTGTTTAAAGTCTAAAAATAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATACTATTCACATCTTCTCAACTGCTGTTTAAAGTCTAAAAATAG  397

seq1  AAAAACAATAAATTCAGTAATTCAAAATGGGTCAACTGATATCCCTTTGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAATAAATTCAGTAATTCAAAATGGGTCAACTGATATCCCTTTGC  447

seq1  TTATTACTGAAAGAAATTAGAATATTGGTGGAAAATTTTTTTTGCTTTTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACTGAAAGAAATTAGAATATTGGTGGAAAATTTTTTTTGCTTTTT  497

seq1  ATTCTTTGGATATTTTATATGGACGTACAATGTATCTTGATCATACTGAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTGGATATTTTATATGGACGTACAATGTATCTTGATCATACTGAC  547

seq1  CACCACCACTCTTCAACTCCCCACAGCGCCCTCCAATGCTCCCCTCTCTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCACTCTTCAACTCCCCACAGCGCCCTCCAATGCTCCCCTCTCTC  597

seq1  AAATTCACAGCATTTTTAAATAGCTCATTAAGTCCAGTTAGTGCTACCTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACAGCATTTTTAAATAGCTCATTAAGTCCAGTTAGTGCTACCTA  647

seq1  TATGCAGTTGGATGTGGGGTCATCTGCTGAAGTGTAAAAAACCTACCAAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGTTGGATGTGGGGTCATCTGCTGAAGTGTAAAAAACCTACCAAT  697

seq1  GCCCTAGTCAAAGGAAAAAAATGAACAAAACTTCTTCCTAACTCAGCTGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGTCAAAGGAAAAAAATGAACAAAACTTCTTCCTAACTCAGCTGC  747

seq1  CATCACCTTCCACTAGTAGGGCCCACTGGTGTAATCATGCCATGATTGTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCTTCCACTAGTAGGGCCCACTGGTGTAATCATGCCATGATTGTT  797

seq1  TAAGGAAGGAACCAACCACTCTCTTACTGATTGTGACGTCTGTTTCAATG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAGGAACCAACCACTCTCTTACTGATTGTGACGTCTGTTTCAATG  847

seq1  GATGGAATTC  854
      ||||||||||
seq2  GATGGAATTC  857