BAC Information

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BAC

Clone NameB6Ng01-124D10
Chromosome5 (Build37)
Map Location 58,504,139 - 58,622,273
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385, LOC100041396, LOC666499, EG625870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124D10.bB6Ng01-124D10.g
ACCDH927177DH927178
length6631,129
definitionDH927177|Mus musculus domesticus DNA, BAC clone: B6Ng01-124D10, 5' end.DH927178|Mus musculus domesticus DNA, BAC clone: B6Ng01-124D10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,621,611 - 58,622,273)(58,504,139 - 58,505,297)
sequence
gaattcagctatttgatttttctatttattcacatattctagcttcatta
agggaagaagttatgccttgattatttcatttggtcctggaaacttaata
aaaaaaaaaactatactcatgtggttggcatagattcagaaagaaaataa
atgaactgtgattttcctggtgttgtttttgcataataattaaaaaacta
gtttacatatgatgaatagaaattataggggcaaatatgttaacaatcta
aattactatttttactgaaaaatacttagtttaccttaacatcacataca
tgctttgtccatatcagacagtatgctttatggtagtaagatgaccctaa
acttagagtggagttttagtcatcagaagctaaaagagctccccaaaccc
tacctgaccatacattgtagcttagaaacacaatgctgtatagaattgta
gattgcttgcttgtctgttgtctgtttccttaatgattgtacatttcact
gaacattaacattaccaatgccaagcagaatccaatgatcatatgcttgt
gcatagctctacacaggaaaagatctaactttacactcttagtttcttta
tgtgtgtgtggctctgtgcttatatctctgcatgcatggtgtgtgtgtgt
gtgtgtgtgtgtg
gaattccaacaacattgaacactttaaaataactatcaggggtgggagaa
gatgcacttctcatacaaactcatttattttaggttcctctaacttagct
caaaataacctaattaagtatgttcgtagtagctttgtgggttagtctgg
aaagaattccttttcagaagaagaaaaaaatatgtggatctttttagttt
atctacaaaacagcaaatttaatcatatcttgcccagtgggaaaggttca
taatgctacttcccatcggttggtagccctagggttaaatattcaatatg
atcatcattatatatgaattactatctagctaaaacctttgttttatgtt
tccaaagcaaaagcatgttaaatgctaactgttttaaaatgtgtcatggt
aagtgtctggacacactgtaaggagatattttatttcactgttttctcaa
attcatgaataatgtataaccggtcacacttcttagatcttcttagactg
agttctgaacctgactgcaattgcaaatgcatttaatcatagccagtccc
catgtgttctttggaagccatgtacgtatatcattttcagataattagtc
ctcattttgaatagacaacattttaaatagttaaatgacattctttaata
catcctaaagggtaaacgagtccctaaatgtattcacagcttttattcag
caaagcaacttctacttgacactttcttgaagacaagttcatgtcaagat
gttttctctttaaaatctctctcttgctcttaagctctgcattatcaagc
ccagttaacatgcagagcaggaatctgcctcttaacttctccccttcttt
ggaggtaatttgctgcttggtaagaactttatgtcttttatagtttctgt
tctgttaagattctttacatcaaatttcttacaaaacgctaaaatacttg
gagagcaacccaaagaatgaaattatatgttaagacaacgttatagttaa
ttcttcatttaccatcttttctgttcccatgcccaaaatgaatggagatt
taaattcaaaaatcatttaatgccataaagcatatcactaaaattgttct
ttaaggaatgagagattaccacgttaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58621611_58622273
seq2: B6Ng01-124D10.b_47_709 (reverse)

seq1  CACACACACACACACACACACACACCATGCATGCAGAGATATAAGCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACCATGCATGCAGAGATATAAGCACAG  50

seq1  AGCCACACACACATAAAGAAACTAAGAGTGTAAAGTTAGATCTTTTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACACACACATAAAGAAACTAAGAGTGTAAAGTTAGATCTTTTCCTG  100

seq1  TGTAGAGCTATGCACAAGCATATGATCATTGGATTCTGCTTGGCATTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGCTATGCACAAGCATATGATCATTGGATTCTGCTTGGCATTGGT  150

seq1  AATGTTAATGTTCAGTGAAATGTACAATCATTAAGGAAACAGACAACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAATGTTCAGTGAAATGTACAATCATTAAGGAAACAGACAACAGA  200

seq1  CAAGCAAGCAATCTACAATTCTATACAGCATTGTGTTTCTAAGCTACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAGCAATCTACAATTCTATACAGCATTGTGTTTCTAAGCTACAAT  250

seq1  GTATGGTCAGGTAGGGTTTGGGGAGCTCTTTTAGCTTCTGATGACTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGTCAGGTAGGGTTTGGGGAGCTCTTTTAGCTTCTGATGACTAAAA  300

seq1  CTCCACTCTAAGTTTAGGGTCATCTTACTACCATAAAGCATACTGTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTCTAAGTTTAGGGTCATCTTACTACCATAAAGCATACTGTCTGA  350

seq1  TATGGACAAAGCATGTATGTGATGTTAAGGTAAACTAAGTATTTTTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACAAAGCATGTATGTGATGTTAAGGTAAACTAAGTATTTTTCAGT  400

seq1  AAAAATAGTAATTTAGATTGTTAACATATTTGCCCCTATAATTTCTATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGTAATTTAGATTGTTAACATATTTGCCCCTATAATTTCTATTC  450

seq1  ATCATATGTAAACTAGTTTTTTAATTATTATGCAAAAACAACACCAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATGTAAACTAGTTTTTTAATTATTATGCAAAAACAACACCAGGAA  500

seq1  AATCACAGTTCATTTATTTTCTTTCTGAATCTATGCCAACCACATGAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGTTCATTTATTTTCTTTCTGAATCTATGCCAACCACATGAGTA  550

seq1  TAGTTTTTTTTTTTATTAAGTTTCCAGGACCAAATGAAATAATCAAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTTTTTTTATTAAGTTTCCAGGACCAAATGAAATAATCAAGGCA  600

seq1  TAACTTCTTCCCTTAATGAAGCTAGAATATGTGAATAAATAGAAAAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCTTCCCTTAATGAAGCTAGAATATGTGAATAAATAGAAAAATCA  650

seq1  AATAGCTGAATTC  663
      |||||||||||||
seq2  AATAGCTGAATTC  663

seq1: chr5_58504139_58505297
seq2: B6Ng01-124D10.g_69_1197

seq1  GAATTCCAACAACATTGAACACTTTAAAATAACTATCAGGGGTGGGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACAACATTGAACACTTTAAAATAACTATCAGGGGTGGGAGAA  50

seq1  GATGCACTTCTCATACAAACTCATTTATTTTAGGTTCCTCTAACTTAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACTTCTCATACAAACTCATTTATTTTAGGTTCCTCTAACTTAGCT  100

seq1  CAAAATAACCTAATTAAGTATGTTCGTAGTAGCTTTGTGGGTTAGTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAACCTAATTAAGTATGTTCGTAGTAGCTTTGTGGGTTAGTCTGG  150

seq1  AAAGAATTCCTTTTCAGAAGAAGAAAAAAATATGTGGATCTTTTTAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTCCTTTTCAGAAGAAGAAAAAAATATGTGGATCTTTTTAGTTT  200

seq1  ATCTACAAAACAGCAAATTTAATCATATCTTGCCCAGTGGGAAAGGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAAAACAGCAAATTTAATCATATCTTGCCCAGTGGGAAAGGTTCA  250

seq1  TAATGCTACTTCCCATCGGTTGGTAGCCCTAGGGTTAAATATTCAATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTACTTCCCATCGGTTGGTAGCCCTAGGGTTAAATATTCAATATG  300

seq1  ATCATCATTATATATGAATTACTATCTAGCTAAAACCTTTGTTTTATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCATTATATATGAATTACTATCTAGCTAAAACCTTTGTTTTATGTT  350

seq1  TCCAAAGCAAAAGCATGTTAAATGCTAACTGTTTTAAAATGTGTCATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGCAAAAGCATGTTAAATGCTAACTGTTTTAAAATGTGTCATGGT  400

seq1  AAGTGTCTGGACACACTGTAAGGAGATATTTTATTTCACTGTTTTCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCTGGACACACTGTAAGGAGATATTTTATTTCACTGTTTTCTCAA  450

seq1  ATTCATGAATAATGTATAACCGGTCACACTTCTTAGATCTTCTTAGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGAATAATGTATAACCGGTCACACTTCTTAGATCTTCTTAGACTG  500

seq1  AGTTCTGAACCTGACTGCAATTGCAAATGCATTTAATCATAGCCAGTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGAACCTGACTGCAATTGCAAATGCATTTAATCATAGCCAGTCCC  550

seq1  CATGTGTTCTTTGGAAGCCATGTACGTATATCATTTTCAGATAATTAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTCTTTGGAAGCCATGTACGTATATCATTTTCAGATAATTAGTC  600

seq1  CTCATTTTGAATAGACAACATTTTAAATAGTTAAATGACATTCTTTAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTGAATAGACAACATTTTAAATAGTTAAATGACATTCTTTAATA  650

seq1  CATCCTAAAGGGTAAACGAGTCCCTAAATGTATTCACAGCTTTTATTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTAAAGGGTAAACGAGTCCCTAAATGTATTCACAGCTTTTATTCAG  700

seq1  CAAAGCAACTTCTACTTGACACTTTCTTGAAGACAAGTTCATGTCAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAACTTCTACTTGACACTTTCTTGAAGACAAGTTCATGTCAAGAT  750

seq1  GTTTTCTCTTTAAAATCTCTCTCTTGCTCTTAAGCTCTGCATTATCAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCTTTAAAATCTCTCTCTTGCTCTTAAGCTCTGCATTATCAAGC  800

seq1  CCAGTTAACATGCAGAGCAGGAATCTGCCTCTTAACTTCTCCCCTTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTAACATGCAGAGCAGGAATCTGCCTCTTAACTTCTCCCCTTCTTT  850

seq1  GGAAGGTAATTTGCTGCTTGGTAAGAACTTTATGTCTTTTATAGTTTCTG  900
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG-AGGTAATTTGCTGCTTGGTAAGAACTTTATGTCTTTTATAGTTTCTG  899

seq1  TTCTGTTAAGATTCTTTACATCAAATTTCTTTACCAAAACGCTAAAATAC  950
      |||||||||||||||||||||||||||||||   ||||||||||||||||
seq2  TTCTGTTAAGATTCTTTACATCAAATTTCTT--ACAAAACGCTAAAATAC  947

seq1  TTGGAGAGGCAACCCAAAGAATGAAATTATATTGTTTTAAAGACAAACGT  1000
      ||||||| ||||||||||||||||||||||| ||||   ||||| |||||
seq2  TTGGAGA-GCAACCCAAAGAATGAAATTATA-TGTT---AAGAC-AACGT  991

seq1  TATAGTTAATTTCTTTCATTTTACCATCTTTTCTGTTCCCAAATGCACCA  1050
      |||||||||||   |||| |||||||||||||||||||||  |||| |||
seq2  TATAGTTAATT--CTTCA-TTTACCATCTTTTCTGTTCCC--ATGC-CCA  1035

seq1  AAAATAGAATGGAGATTTAAATTCCAAAAATATGATTTTAAAATG-CATA  1099
      |||   ||||||||||||||||||   ||| || ||||   |||| ||||
seq2  AAA--TGAATGGAGATTTAAATTC---AAAAATCATTT---AATGCCATA  1077

seq1  AATAGTAATTAT-ATAAAAATTGTTTCTTTAGAGGAAATGAGAGATTATA  1148
      |  || |  ||| |  ||||||| ||||||| ||| ||||||||||  ||
seq2  A--AGCA--TATCACTAAAATTG-TTCTTTA-AGG-AATGAGAGAT--TA  1118

seq1  CATAGTTAAGT  1159
      |   |||||||
seq2  CCACGTTAAGT  1129