BAC Information

Click to search

BAC

Clone NameB6Ng01-126D18
Chromosome5 (Build37)
Map Location 144,094,438 - 144,249,704
singlet/doubletdoublet
Overlap geneGrid2ip, Kdelr2, LOC231869, LOC670671, Daglb
Upstream geneWipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4
Downstream geneRac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126D18.bB6Ng01-126D18.g
ACCDH928660DH928661
length8401,044
definitionDH928660|Mus musculus domesticus DNA, BAC clone: B6Ng01-126D18, 5' end.DH928661|Mus musculus domesticus DNA, BAC clone: B6Ng01-126D18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,094,438 - 144,095,277)(144,248,650 - 144,249,704)
sequence
gaattcacggccagcctggtcgacagagtgagttccagaacagccagggc
tacacagagaaaccctgttttagagggggggggggaaacacacacacaca
acaagccaggaatgatggcatgcacctgtgacccagtgctggaagtcaga
atccggaagatcaaaggggctggctgatagcaggtctaggctggtagatt
tgctacatatcccaatgagaagctcttaaaaaaaaaaaaaagttggagag
tagcatcatagctcaactcagaggtccagaatccatctcccagtatccct
acaccaaagcaaatgtgggaccctgcagactttctttttaagtaaccatt
tctttttttatataattcttttttacacatttacttaatgtgagtacact
gttgctctcttcagacacaccagaaagagggcattggatcccattacaga
tagttgtgagccaccatgtggttgctgggaattgaactcatgacctctgg
aagagcagtcagcgctcttaactgctgagccatctctccggttctcccta
cagactttcaaccccaaccttgagtggacagaggcaggaggatcactgga
gcttgctggttgtcagcctacctgaaagaaacaagagctctgagtttgtc
aggagacactgcccccgaggaatagctggaaagtggtagagaatgacagt
ggcctcctcctccaacctctatgtgtgcatggggcccattacacacgtgc
gtgtgcaacacacatacacataaataagctataaaggcaagtaggtgtct
cttaaggaatgacctccgcacatgctcacaagcacataca
gaattcctcagccagcgagcctggggctgtgagatctaagatggtggacc
gatcaaggaggaatggataacactaaggcctgagtcagggccttccacac
agtagggtaagggctctatcttgagacccagcctctgacagggagacgct
aggcagatgcccaggtctcttttcttagaccaggtctcagtatgtaggca
gccttggctggcctggaactccctgtgtagacctgcctgcctctgcctcc
ccagggctggaattaaagctatggcacagatgtccaccctcccattcacc
ttatgatgatgatgtagtatgtgggtgctttgtttacacgtatgtctgtg
taacacatgcatgcctgatatcgacagaggccagaaaagggtgctggatc
ccctggaaatggagttactacggatggttatgagctgctattaggtgctg
ggaagtgtactcagatctcacctagggctgagccaaggcctgctttatat
tgatacagggcctaagttgcttaggctagccctgaacttaaaacttgttt
cagccttcacagtatctgtgattacaggcccatcctgcctgctcggcagt
aacactggtcccttccgggtaagcaaaggaccaggaagtgagaggaaagg
gtggcagagaagccaccagaaagcagatgcagaagacggaaggagctgaa
caaaaagaggaggtggaggggactgggagacaagggctcaaggcagcata
tggggaccttaggaaggacggcctgcagagaaccccaaacaaacttgaca
gtctgacttttatcttgtatgtcttgtgatgtgctatttggtgtgtacaa
agcacttgtgtcatggaacaggatgggtgcttggatcagaaaacccccaa
aatgccatctttcattcccaaggtcccctcctgccatttaccccacaggc
actggtgccttggcttccaaacagactcctgtttcatctcctatttgctg
taaaagctgaagatgaccaacccagtaggcctcccgattgatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_144094438_144095277
seq2: B6Ng01-126D18.b_49_888

seq1  GAATTCACGGCCAGCCTGGTCGACAGAGTGAGTTCCAGAACAGCCAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGGCCAGCCTGGTCGACAGAGTGAGTTCCAGAACAGCCAGGGC  50

seq1  TACACAGAGAAACCCTGTTTTAGAGGGGGGGGGGGAAACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAAACCCTGTTTTAGAGGGGGGGGGGGAAACACACACACACA  100

seq1  ACAAGCCAGGAATGATGGCATGCACCTGTGACCCAGTGCTGGAAGTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCAGGAATGATGGCATGCACCTGTGACCCAGTGCTGGAAGTCAGA  150

seq1  ATCCGGAAGATCAAAGGGGCTGGCTGATAGCAGGTCTAGGCTGGTAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGGAAGATCAAAGGGGCTGGCTGATAGCAGGTCTAGGCTGGTAGATT  200

seq1  TGCTACATATCCCAATGAGAAGCTCTTAAAAAAAAAAAAAAGTTGGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACATATCCCAATGAGAAGCTCTTAAAAAAAAAAAAAAGTTGGAGAG  250

seq1  TAGCATCATAGCTCAACTCAGAGGTCCAGAATCCATCTCCCAGTATCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCATAGCTCAACTCAGAGGTCCAGAATCCATCTCCCAGTATCCCT  300

seq1  ACACCAAAGCAAATGTGGGACCCTGCAGACTTTCTTTTTAAGTAACCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAAGCAAATGTGGGACCCTGCAGACTTTCTTTTTAAGTAACCATT  350

seq1  TCTTTTTTTATATAATTCTTTTTTACACATTTACTTAATGTGAGTACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTATATAATTCTTTTTTACACATTTACTTAATGTGAGTACACT  400

seq1  GTTGCTCTCTTCAGACACACCAGAAAGAGGGCATTGGATCCCATTACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCTCTTCAGACACACCAGAAAGAGGGCATTGGATCCCATTACAGA  450

seq1  TAGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCATGACCTCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCATGACCTCTGG  500

seq1  AAGAGCAGTCAGCGCTCTTAACTGCTGAGCCATCTCTCCGGTTCTCCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGTCAGCGCTCTTAACTGCTGAGCCATCTCTCCGGTTCTCCCTA  550

seq1  CAGACTTTCAACCCCAACCTTGAGTGGACAGAGGCAGGAGGATCACTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTTCAACCCCAACCTTGAGTGGACAGAGGCAGGAGGATCACTGGA  600

seq1  GCTTGCTGGTTGTCAGCCTACCTGAAAGAAACAAGAGCTCTGAGTTTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTGGTTGTCAGCCTACCTGAAAGAAACAAGAGCTCTGAGTTTGTC  650

seq1  AGGAGACACTGCCCCCGAGGAATAGCTGGAAAGTGGTAGAGAATGACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACACTGCCCCCGAGGAATAGCTGGAAAGTGGTAGAGAATGACAGT  700

seq1  GGCCTCCTCCTCCAACCTCTATGTGTGCATGGGGCCCATTACACACGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCTCCTCCAACCTCTATGTGTGCATGGGGCCCATTACACACGTGC  750

seq1  GTGTGCAACACACATACACATAAATAAGCTATAAAGGCAAGTAGGTGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAACACACATACACATAAATAAGCTATAAAGGCAAGTAGGTGTCT  800

seq1  CCTAAGGAATGACCTCCGCACATGCTCACAAGCACATACA  840
      | ||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGAATGACCTCCGCACATGCTCACAAGCACATACA  840

seq1: chr5_144248650_144249704
seq2: B6Ng01-126D18.g_68_1111 (reverse)

seq1  ACATACAATCCGGAGGCCT-CTGTGTGTGTCATC-TCAGCTGTCTACAGC  48
      |||| ||||| |||||||| ||| ||  |||||| |||||| | ||||||
seq2  ACAT-CAATCGGGAGGCCTACTGGGTTGGTCATCTTCAGCT-TTTACAGC  48

seq1  AAAATGGGAGATGAAACAGGAGTCTGTCTGGAATGCCAAGGGCCACAGTG  98
       |||| ||||||||||||||||||||| ||||| ||||| |||  |||||
seq2  -AAATAGGAGATGAAACAGGAGTCTGTTTGGAA-GCCAA-GGCACCAGTG  95

seq1  CCTGGTGCGTAAACTGGCCAGCAGGAGACCCTGGGAGATGAAAGATGGCA  148
      ||||  | ||||| ||| ||| ||| |||| ||||| |||||||||||||
seq2  CCTGTGGGGTAAA-TGG-CAGGAGGGGACCTTGGGA-ATGAAAGATGGCA  142

seq1  TCTGCGTGGTTTTCTGATCCAAGCACCATACCTGTTCCATGACACACGTG  198
      | |  | ||||||||||||||||||||   |||||||||||||||| |||
seq2  TTTTGGGGGTTTTCTGATCCAAGCACCCATCCTGTTCCATGACACAAGTG  192

seq1  CTTTGTACACA-CAAATATGCACATGCACAAGACATAC-AGATTAAAAAG  246
      ||||||||||| |||||| |||||| |||||||||||| ||||  |||||
seq2  CTTTGTACACACCAAATA-GCACAT-CACAAGACATACAAGAT--AAAAG  238

seq1  TCAGACTGTCAAGTTTGTTTTGGGGTTCTCTGCAGGCCGTCCCTTCCTCC  296
      ||||||||||||||||| |||||||||||||||||||||| |||||||  
seq2  TCAGACTGTCAAGTTTG-TTTGGGGTTCTCTGCAGGCCGT-CCTTCCTAA  286

seq1  GGTCCCCATATGCTGCCTTGAGCCCCTTGTCTCCCAGTCCCCTCCACCTC  346
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGTCCCCATATGCTGCCTTGAG-CCCTTGTCTCCCAGTCCCCTCCACCTC  335

seq1  CTCTTTTTGTTCAGCTCCTTCCGTCTTCTGCATCTGCTTTCTGGTGGCTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTGTTCAGCTCCTTCCGTCTTCTGCATCTGCTTTCTGGTGGCTT  385

seq1  CTCTGCCACCCTTTCCTCTCACTTCCTGGTCCTTTGCTTACCCGGAAGGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCACCCTTTCCTCTCACTTCCTGGTCCTTTGCTTACCCGGAAGGG  435

seq1  ACCAGTGTTACTGCCGAGCAGGCAGGATGGGCCTGTAATCACAGATACTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGTTACTGCCGAGCAGGCAGGATGGGCCTGTAATCACAGATACTG  485

seq1  TGAAGGCTGAAACAAGTTTTAAGTTCAGGGCTAGCCTAAGCAACTTAGGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCTGAAACAAGTTTTAAGTTCAGGGCTAGCCTAAGCAACTTAGGC  535

seq1  CCTGTATCAATATAAAGCAGGCCTTGGCTCAGCCCTAGGTGAGATCTGAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATCAATATAAAGCAGGCCTTGGCTCAGCCCTAGGTGAGATCTGAG  585

seq1  TACACTTCCCAGCACCTAATAGCAGCTCATAACCATCCGTAGTAACTCCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTCCCAGCACCTAATAGCAGCTCATAACCATCCGTAGTAACTCCA  635

seq1  TTTCCAGGGGATCCAGCACCCTTTTCTGGCCTCTGTCGATATCAGGCATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGGGATCCAGCACCCTTTTCTGGCCTCTGTCGATATCAGGCATG  685

seq1  CATGTGTTACACAGACATACGTGTAAACAAAGCACCCACATACTACATCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTACACAGACATACGTGTAAACAAAGCACCCACATACTACATCA  735

seq1  TCATCATAAGGTGAATGGGAGGGTGGACATCTGTGCCATAGCTTTAATTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATAAGGTGAATGGGAGGGTGGACATCTGTGCCATAGCTTTAATTC  785

seq1  CAGCCCTGGGGAGGCAGAGGCAGGCAGGTCTACACAGGGAGTTCCAGGCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTGGGGAGGCAGAGGCAGGCAGGTCTACACAGGGAGTTCCAGGCC  835

seq1  AGCCAAGGCTGCCTACATACTGAGACCTGGTCTAAGAAAAGAGACCTGGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGCTGCCTACATACTGAGACCTGGTCTAAGAAAAGAGACCTGGG  885

seq1  CATCTGCCTAGCGTCTCCCTGTCAGAGGCTGGGTCTCAAGATAGAGCCCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCCTAGCGTCTCCCTGTCAGAGGCTGGGTCTCAAGATAGAGCCCT  935

seq1  TACCCTACTGTGTGGAAGGCCCTGACTCAGGCCTTAGTGTTATCCATTCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTACTGTGTGGAAGGCCCTGACTCAGGCCTTAGTGTTATCCATTCC  985

seq1  TCCTTGATCGGTCCACCATCTTAGATCTCACAGCCCCAGGCTCGCTGGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGATCGGTCCACCATCTTAGATCTCACAGCCCCAGGCTCGCTGGCT  1035

seq1  GAGGAATTC  1055
      |||||||||
seq2  GAGGAATTC  1044