BAC Information

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BAC

Clone NameB6Ng01-126F02
Chromosome5 (Build37)
Map Location 121,578,915 - 121,686,507
singlet/doubletdoublet
Overlap genePtpn11, Rpl6, LOC100039686, EG545802
Upstream geneRbm19, LOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299
Downstream geneAU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126F02.bB6Ng01-126F02.g
ACCDH928717DH928718
length636527
definitionDH928717|Mus musculus domesticus DNA, BAC clone: B6Ng01-126F02, 5' end.DH928718|Mus musculus domesticus DNA, BAC clone: B6Ng01-126F02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,685,871 - 121,686,507)(121,578,915 - 121,579,447)
sequence
gaattcaaatctcctgtttctaaagtaacaagatgcgggaagggagaggg
ctccagggctagctaaccaaccggtcagaagtgtggctgaacactatcag
gctctccaaacttggagggtgtagtagtaaggctcgtgtctgctgcctgc
tggaacacagataaggagacgggcacagatggcttcctcctgctgtctcc
ataacatgactcaccacagcatggaaagctttctagctaaacaatttaaa
taatctttaatgatgaaaaaccaaatgagtggctcagaaaagaaaactac
ttaagcagatacaccaaaaaccatttcatgaaactctagatctattaact
gctactagtttctagatagatacaagtgggtttcatgccgggcatggtgg
cgcacttgggaggcagaggcaggcagatttctgagttcgaggccagcctg
gtctacagagtgagttccaggacagggctacaaagagaaaccctgtcccg
aaaaacagaaggaaggaaggaaggaaggaaggaaggaaggaaggaatgaa
ggaaggaaagaaacaatctgaagcagggctagagagatggctagcggtta
agatcactgacccgggtctgtctgtgtttctctctc
ctgccttggttttcccttgatgatagatactgtctgccaaataaatcctt
tcctttccaagctgtctttagtcaaggtgtgtatcacagcaaatgcagtt
tctggaatctggactaggtaggggaggggcatctgcagtgtaagctccag
gaccaaggacaccaagcagaagtgagatgggaccacacagcaggcacttg
ggccaggaacttctctgtggaatggcaacctagtttaatccatggcctcc
tcgctgtagaatttggcccttcaagcaaaacagccgccatcttcattgga
tcagcctgcttacaagtccctcacatgtggattctgtatggattgttgaa
cctccctcagaggcaaagcgtgagaagcgccctcagtctccctagccttc
cactggcagctcttaacttgagatggcctcaaggtctcagcagctgctag
ggtacaaaaggctgaggaaggtaactgattggggctccatctatgcagtt
atccagagccatcacccatgctgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_121685871_121686507
seq2: B6Ng01-126F02.b_48_683 (reverse)

seq1  GAGAGAGAGACACAGACAGACCCGGGTCAGTGCTCTTAACCGCTGAGCCA  50
      |||||||| ||||||||||||||||||||||| ||||||||||| |||||
seq2  GAGAGAGAAACACAGACAGACCCGGGTCAGTGATCTTAACCGCT-AGCCA  49

seq1  TCTCTCTAGCCCTGCTTCAGTTTGTTTCTTTCCTTCCTTCCTTCCTTCCT  100
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  TCTCTCTAGCCCTGCTTCAGATTGTTTCTTTCCTTCCTTCATTCCTTCCT  99

seq1  TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTGTTTTTCGGGACAGGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTGTTTTTCGGGACAGGGTTT  149

seq1  CTCTTTGTAGCCCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGTAGCCCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCG  199

seq1  AACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCGCCACCATGCCCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCGCCACCATGCCCGG  249

seq1  CATGAAACCCACTTGTATCTATCTAGAAACTAGTAGCAGTTAATAGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAACCCACTTGTATCTATCTAGAAACTAGTAGCAGTTAATAGATCT  299

seq1  AGAGTTTCATGAAATGGTTTTTGGTGTATCTGCTTAAGTAGTTTTCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTCATGAAATGGTTTTTGGTGTATCTGCTTAAGTAGTTTTCTTTT  349

seq1  CTGAGCCACTCATTTGGTTTTTCATCATTAAAGATTATTTAAATTGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCACTCATTTGGTTTTTCATCATTAAAGATTATTTAAATTGTTTA  399

seq1  GCTAGAAAGCTTTCCATGCTGTGGTGAGTCATGTTATGGAGACAGCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAAGCTTTCCATGCTGTGGTGAGTCATGTTATGGAGACAGCAGGA  449

seq1  GGAAGCCATCTGTGCCCGTCTCCTTATCTGTGTTCCAGCAGGCAGCAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCATCTGTGCCCGTCTCCTTATCTGTGTTCCAGCAGGCAGCAGAC  499

seq1  ACGAGCCTTACTACTACACCCTCCAAGTTTGGAGAGCCTGATAGTGTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGCCTTACTACTACACCCTCCAAGTTTGGAGAGCCTGATAGTGTTCA  549

seq1  GCCACACTTCTGACCGGTTGGTTAGCTAGCCCTGGAGCCCTCTCCCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACTTCTGACCGGTTGGTTAGCTAGCCCTGGAGCCCTCTCCCTTCC  599

seq1  CGCATCTTGTTACTTTAGAAACAGGAGATTTGAATTC  637
      |||||||||||||||||||||||||||||||||||||
seq2  CGCATCTTGTTACTTTAGAAACAGGAGATTTGAATTC  636

seq1: chr5_121578915_121579447
seq2: B6Ng01-126F02.g_71_603

seq1  GAATTCCTGCCTTGGTTTTCCCTTGATGATAGATACTGTCTGCCAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCTTGGTTTTCCCTTGATGATAGATACTGTCTGCCAAATAA  50

seq1  ATCCTTTCCTTTCCAAGCTGTCTTTAGTCAAGGTGTGTATCACAGCAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCCTTTCCAAGCTGTCTTTAGTCAAGGTGTGTATCACAGCAAAT  100

seq1  GCAGTTTCTGGAATCTGGACTAGGTAGGGGAGGGGCATCTGCAGTGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTCTGGAATCTGGACTAGGTAGGGGAGGGGCATCTGCAGTGTAAG  150

seq1  CTCCAGGACCAAGGACACCAAGCAGAAGTGAGATGGGACCACACAGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGACCAAGGACACCAAGCAGAAGTGAGATGGGACCACACAGCAGG  200

seq1  CACTTGGGCCAGGAACTTCTCTGTGGAATGGCAACCTAGTTTAATCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGGCCAGGAACTTCTCTGTGGAATGGCAACCTAGTTTAATCCATG  250

seq1  GCCTCCTCGCTGTAGAATTTGGCCCTTCAAGCAAAACAGCCGCCATCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTCGCTGTAGAATTTGGCCCTTCAAGCAAAACAGCCGCCATCTTC  300

seq1  ATTGGATCAGCCTGCTTACAAGTCCCTCACATGTGGATTCTGTATGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATCAGCCTGCTTACAAGTCCCTCACATGTGGATTCTGTATGGATT  350

seq1  GTTGAACCTCCCTCAGAGGCAAAGCGTGAGAAGCGCCCTCAGTCTCCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACCTCCCTCAGAGGCAAAGCGTGAGAAGCGCCCTCAGTCTCCCTA  400

seq1  GCCTTCCACTGGCAGCTCTTAACTTGAGATGGCCTCAAGGTCTCAGCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCACTGGCAGCTCTTAACTTGAGATGGCCTCAAGGTCTCAGCAGC  450

seq1  TGCTAGGGTACAAAAGGCTGAGGAAGGTAACTGATTGGGGCTCCATCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGGTACAAAAGGCTGAGGAAGGTAACTGATTGGGGCTCCATCTAT  500

seq1  GCAGTTATCCAGAGCCATCACCCATGCTGGGTG  533
      |||||||||||||||||||||||||||||||||
seq2  GCAGTTATCCAGAGCCATCACCCATGCTGGGTG  533