BAC Information

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BAC

Clone NameB6Ng01-126G10
Chromosome12 (Build37)5 (Build37)
Map Location 40,027,651 - 40,028,74575,383,896 - 75,384,479
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDgkb, LOC668824, LOC100043142, Etv1, LOC100043145
Downstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126G10.bB6Ng01-126G10.g
ACCDH928780DH928781
length1,092814
definitionDH928780|Mus musculus domesticus DNA, BAC clone: B6Ng01-126G10, 5' end.DH928781|Mus musculus domesticus DNA, BAC clone: B6Ng01-126G10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,027,651 - 40,028,745)(75,383,896 - 75,384,479)
sequence
gaattctaagcaggtatgagcagcttaatttgaggtattttaagtttttc
agtttacagccctttcaaaaaggttatataaatgcattttcctgctctgg
gttctgaatgcacaaacactaagttcaaaggcagcagacttgtgtgatca
cttcataaaactcacttggcttcacggtttcagtacagatatgacaaggc
tgtttatcagtaggtaataagatagataatttaactgtacaagctctaat
tggtctaattcactaactgacctctcgccacttgattcactagtacaatc
gagctctgataaagcctttaattgtaaattgcacacagctgtgagctgct
tctcacgctggcacaaaaacactatcatcgactgtttcttctcggcgacc
tgctaatttggagcgtatgtaactgtttttaatgctgaaggcttgacata
ccacaaacagcagatgttgcagctgccccgagacgctttatttaattcaa
ttacgtcttttggagatatgtaaaaaagctaggcaagatgagagagggca
agagaatgttaaaaatggagcccctggttgaggcccaggtggctcgatag
gcaaatgattgggtgaatgtctaaatgatctttttaattgagtagactga
cggctaatcagggtcatgaagtgttatcacactgatgagctgagaggagc
cctgggctgctctgcaattaatgctgcttttgtgcaagaagaaaaaaaga
aagatcatgtataccatctggcaattgtttatgataaaagcagcagtttg
ctgcaaattccagttaaatgctattcataacattatttttgctgctgctc
agggccaggacatgaatcctaggcctttgtctgacttcttattctcctgc
acaacccaaacattcattttcttcaacgtgtgttattattaattacttgg
ctgcttgctactgtatggcctgaatggtcctctgttggatccggcaatgt
gaagcccagcacacacttcttggactctactttggctttcatgccatata
tctgatttcactaaacaagcaacagccaaagtcacagccaaa
gaattcatgcagttgaatccttctcaacagtctgttttacgggaacactt
cattaccaccattccccagctgaagagttctgaatccacgctggatcctt
ctcaacagtctgttttacgggaacacttcattactgtgacccgcagttct
ggttccggaatgaggaatcttccttgcgccggtgatggttaactcccgtc
ccgagttttcttgtcccgggttttttcgtcccgggttctttcttcccggg
ttttcggcaccaactcttacacgcgttcgcgaccggccaggaaagacgca
gcaaaccagaatcttctgcggcaaaactttattgcttacatcttcaggag
caagagtgcaagccccaaaaagcaaaagcgaaaccccgtccctcttaagg
agagttatccttcgcctaggacgtatcactccctgattggctgcagccca
tggccgagttgtcgtcacggggaaggcagagcacatagagtggagaacta
cccttggcacatgcacagattatttgtttaccacttagaacacagctgtc
agcgccatcttgtaacggcgaatgtgggggcggcttcccacatgtttcca
ataggaaactgagttagaaagcaattgagaaatattctgacaaggaccat
aattttattctgttcatgtcatgagaaattgagtgaggctgaatataaca
atagtgtactaatttgtgcttttgtttggcatcaggaatttcaagataga
ataatattcaatgtatgacattttgtttagctacatggacacacacactc
acagagagagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_40027651_40028745
seq2: B6Ng01-126G10.b_45_1136

seq1  GAATTCTAAGCAGGTATGAGCAGCTTAATTTGAGGTATTTTAAGTTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGCAGGTATGAGCAGCTTAATTTGAGGTATTTTAAGTTTTTC  50

seq1  AGTTTACAGCCCTTTCAAAAAGGTTATATAAATGCATTTTCCTGCTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACAGCCCTTTCAAAAAGGTTATATAAATGCATTTTCCTGCTCTGG  100

seq1  GTTCTGAATGCACAAACACTAAGTTCAAAGGCAGCAGACTTGTGTGATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAATGCACAAACACTAAGTTCAAAGGCAGCAGACTTGTGTGATCA  150

seq1  CTTCATAAAACTCACTTGGCTTCACGGTTTCAGTACAGATATGACAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAAAACTCACTTGGCTTCACGGTTTCAGTACAGATATGACAAGGC  200

seq1  TGTTTATCAGTAGGTAATAAGATAGATAATTTAACTGTACAAGCTCTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATCAGTAGGTAATAAGATAGATAATTTAACTGTACAAGCTCTAAT  250

seq1  TGGTCTAATTCACTAACTGACCTCTCGCCACTTGATTCACTAGTACAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTAATTCACTAACTGACCTCTCGCCACTTGATTCACTAGTACAATC  300

seq1  GAGCTCTGATAAAGCCTTTAATTGTAAATTGCACACAGCTGTGAGCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTGATAAAGCCTTTAATTGTAAATTGCACACAGCTGTGAGCTGCT  350

seq1  TCTCACGCTGGCACAAAAACACTATCATCGACTGTTTCTTCTCGGCGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACGCTGGCACAAAAACACTATCATCGACTGTTTCTTCTCGGCGACC  400

seq1  TGCTAATTTGGAGCGTATGTAACTGTTTTTAATGCTGAAGGCTTGACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATTTGGAGCGTATGTAACTGTTTTTAATGCTGAAGGCTTGACATA  450

seq1  CCACAAACAGCAGATGTTGCAGCTGCCCCGAGACGCTTTATTTAATTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAACAGCAGATGTTGCAGCTGCCCCGAGACGCTTTATTTAATTCAA  500

seq1  TTACGTCTTTTGGAGATATGTAAAAAAGCTAGGCAAGATGAGAGAGGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGTCTTTTGGAGATATGTAAAAAAGCTAGGCAAGATGAGAGAGGGCA  550

seq1  AGAGAATGTTAAAAATGGAGCCCCTGGTTGAGGCCCAGGTGGCTCGATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGTTAAAAATGGAGCCCCTGGTTGAGGCCCAGGTGGCTCGATAG  600

seq1  GCAAATGATTGGGTGAATGTCTAAATGATCTTTTTAATTGAGTAGACTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGATTGGGTGAATGTCTAAATGATCTTTTTAATTGAGTAGACTGA  650

seq1  CGGCTAATCAGGGTCATGAAGTGTTATCACACTGATGAGCTGAGAGGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTAATCAGGGTCATGAAGTGTTATCACACTGATGAGCTGAGAGGAGC  700

seq1  CCTGGGCTGCTCTGCAATTAATGCTGCTTTTGTGCAAGAAGAAAAAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCTGCTCTGCAATTAATGCTGCTTTTGTGCAAGAAGAAAAAAAGA  750

seq1  AAGATCATGTATACCATCTGGCAATTGTTTATGATAAAAGCAGCAGTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCATGTATACCATCTGGCAATTGTTTATGATAAAAGCAGCAGTTTG  800

seq1  CTGCAAATTCCAGTTAAATGCTATTCATAACATTATTTTTGCTGCTGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATTCCAGTTAAATGCTATTCATAACATTATTTTTGCTGCTGCTC  850

seq1  AGGGCCAGGACATGAATCCTAGGCCTTTGTCTGACTTCTTATTCTCCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAGGACATGAATCCTAGGCCTTTGTCTGACTTCTTATTCTCCTGC  900

seq1  ACAACCAAAACATTCATTTTCTTCAACGTGTGTTATTATTAATTACTTGG  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCAAACATTCATTTTCTTCAACGTGTGTTATTATTAATTACTTGG  950

seq1  CTGCTTGCTACTGTATGGCCTGAATGGTCCTCTGTTGGATCCGGCAATGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGCTACTGTATGGCCTGAATGGTCCTCTGTTGGATCCGGCAATGT  1000

seq1  GAAGCCCAGCACACACTTCTTGGACTCTACTTTGGCTTTCATGCCAATAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAAGCCCAGCACACACTTCTTGGACTCTACTTTGGCTTTCATGCC-ATAT  1049

seq1  ATCTGATTTCACTAAAACAAAGCAACAGCCAAAGTCACAGCCAAA  1095
      ||||||||||||||||   ||||||||||||||||||||||||||
seq2  ATCTGATTTCACTAAA--CAAGCAACAGCCAAAGTCACAGCCAAA  1092

seq1: chr5_75383896_75384479
seq2: B6Ng01-126G10.g_67_630 (reverse)

seq1  TACAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATCTG  50
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  TACAAGATGGCGCTGACA-GCTGTGTTCTAAGTGGTAAACAAATAATCTG  49

seq1  CGCATGTGCCAAGGGTAGTTCTCCACCCCATGTGCTCTGCCTTCCCCGTG  100
       ||||||||||||||||||||||||| | |||||||||||||||||||||
seq2  TGCATGTGCCAAGGGTAGTTCTCCACTCTATGTGCTCTGCCTTCCCCGTG  99

seq1  ACGACAACTCAGCCGATGGGCTGCAGCCAATCAAGGAGTAATACGTCCTA  150
      |||||||||| ||| |||||||||||||||||| ||||| ||||||||||
seq2  ACGACAACTCGGCC-ATGGGCTGCAGCCAATCAGGGAGTGATACGTCCTA  148

seq1  GGCGGAGAATAATTCTCCTTAAAAGGGACGGGGTTTCGCCATTCTCTCCT  200
      |||| || |||| ||||||||| |||||||||||||||         | |
seq2  GGCGAAGGATAACTCTCCTTAAGAGGGACGGGGTTTCG---------CTT  189

seq1  TTGCTCTCTTGCTTTTGCTCTTGCACTCTTGCTCCTGAAGATGTAAGCAA  250
      |||||       ||| |  |||||||||||||||||||||||||||||||
seq2  TTGCT------TTTTGGGGCTTGCACTCTTGCTCCTGAAGATGTAAGCAA  233

seq1  TAAAGTTTTGCCGCAGAAGATTCTGGTTTGTTGCGTTCTTCCTGGCCGGT  300
      |||||||||||||||||||||||||||||| |||||  ||||||||||||
seq2  TAAAGTTTTGCCGCAGAAGATTCTGGTTTGCTGCGTCTTTCCTGGCCGGT  283

seq1  CGCGAGAACGCGTGTAAGAGTTGGTGCTG-AGACCCGGGACGAGAAGACC  349
      |||  |||||||||||||||||||||| | | |||||||| || |  |||
seq2  CGC--GAACGCGTGTAAGAGTTGGTGCCGAAAACCCGGGAAGAAAGAACC  331

seq1  TGGGACGAAAAAACCCGGGACAAGAAAACCCTGGACGG----TTACCATC  395
       |||||||||||||||||||||||||||| | ||||||    | ||||||
seq2  CGGGACGAAAAAACCCGGGACAAGAAAACTCGGGACGGGAGTTAACCATC  381

seq1  ACCGGCGCAAGGAAGATCCCTCATTCCGGAACCAGAACTGCGGGTCACGG  445
      ||||||||||||||||| ||||||||||||||||||||||||||||||  
seq2  ACCGGCGCAAGGAAGATTCCTCATTCCGGAACCAGAACTGCGGGTCAC--  429

seq1  TGGTAATGAAGTGTTCCCGTAAAACAGACTGTTGAGAAGGATTCAACTGC  495
        |||||||||||||||||||||||||||||||||||||||| ||   ||
seq2  -AGTAATGAAGTGTTCCCGTAAAACAGACTGTTGAGAAGGATCCA---GC  475

seq1  GTGAATTCAGAACTCTTCAGCTGGGGAATGGTGGTAATGAAGTGTTCCCG  545
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTCAGAACTCTTCAGCTGGGGAATGGTGGTAATGAAGTGTTCCCG  525

seq1  TAAAACAGACTGTTGAGAAGGATTCAACTGCGTGAATTC  584
      ||||||||||||||||||||||||||||||| |||||||
seq2  TAAAACAGACTGTTGAGAAGGATTCAACTGCATGAATTC  564