BAC Information

Click to search

BAC

Clone NameB6Ng01-126J14
Chromosome5 (Build37)
Map Location 31,666,142 - 31,843,523
singlet/doubletdoublet
Overlap geneZfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap
Upstream geneGm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr
Downstream geneMrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126J14.bB6Ng01-126J14.g
ACCDH928927DH928928
length1,1441,101
definitionDH928927|Mus musculus domesticus DNA, BAC clone: B6Ng01-126J14, 5' end.DH928928|Mus musculus domesticus DNA, BAC clone: B6Ng01-126J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,666,142 - 31,667,321)(31,842,413 - 31,843,523)
sequence
gaattcattttggatattacagtgcaagtcgctgtcatagcaaccatcca
aagattctttgaacgaatcccaaatatttatgatcattgtcattctgtaa
gttctggccatcccaaagtaggtgtactgtgtttatgcttgatgaaaatt
ttcagttgatgataaatttttgagtagtttcactgtctaaatccagatag
gcagttgttttcttttagcacataaaataatgttattctgtttcctggtg
cccagtatttctaatagcacaccagttctttgcctcctgctcacttggat
atgataactcttttatttggggcaggctttagaactcctttccatacttg
gcatttttgaatgtacttaattcagctatttttttgggcttctgcagtca
taacactgacatatcaatgcttctcagttctcacaactttctagttatta
agtcaaagaacagactgcttcaaagtcattttaagggatgagaagatatg
tgagttggtaaagtacttgattgctttgcaagcatgaggacctgactttg
ctccctacagttatgtaagagatctgtgttccgagcaaactcttgtaatc
ccagcactaggggtagagggtaaagacaggtattcttgggactcactgcc
cagccaatttagacttcctgacaatccccagaccaaagagagaccttgtc
tcaaacaaacaacaaggaaacaaacaaacagatgtgggtggcacctgagg
aatgacacttgaggttgacttggaccttcgtgtacacaggccccataagc
aggcatacccctgcacatgtatcctaacatgcaaatgcacacgcacacaa
acgtgaaactgaccagtttttacattcatgggaaattgagcagacagtgc
tgagttccttatatttcagtgttaatgatctgcaataaggttagctacat
tctccctcccttctttggagatctcattactgtatctttgtttttggctc
attttctctcatctacacaccatctagatctttcatcacatggaaatcta
atgacagatggactttcgagatggcttcatcagtagtcagatgtctgaac
ttaattctaagctgactgactcatctagctttatgtcaaacctc
gaattctcagggaactactatttttaaataaggagaaaaaacaatattcc
agcagtaagcaaagtaaatcatggggaaaaatatcaccataggcacttca
ttcctaaatatggcacacattagaaacattaaactagctcaggactgcca
gggctacacagtgagactgctgaaagaaaaggggtagggggagaaagaaa
gaaaaaaaagaaaagaaactaaactaataaactaattaaaaaaaaaatat
ccgagttctttccaagtcgcctgtgtctgtgtgcacacgaggccagggga
ggcgtcagctgtcctcctccatcactctccacctccctgcttactgaccc
tgcagcccagcgaggctgtcagtcagcaagccccagcaaccctgcctttg
cagccctccgtgctggggtcacactgcacagggccatgcttcactttaca
cggggtactgggccccgaactctggacttcatacttgggagcgacacctg
agccatctttgcagtccagttcactaatctcagcaagagatgctcatgct
aatccaacagccctttctcacaaaaccagggaataagacagaaaacctag
ttcagggatagctcaaggacgaggagttcaacacactctaactcacaact
tacccctactgtcccagttttttaatttgaatttgcttcctcctttcatg
gcaccaaagagaggcaatgcaagtttcttagttttgttttctgcatttgt
agtctgaagttcagtcctaggaagaggaacaattataaatatctgttcta
gttaagttttaggtcttgccttacgtgccatgaaactgggctggcgagat
ggctcaccaggtaaaagcacttggcagtcaggtctgagcacttgttcaaa
ccctgtgagcccacagaaatgttgaagagagatgtgactctgcaagtgga
cttctgaccccacacactgtactacgctcaactgcacataaccatataca
gaacagtgtttaaaataccaagaatcttgacgaggacactccgtagaaca
aacctgaccccagatgagtatgcgatctaaccagagggaagcagcctact
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31666142_31667321
seq2: B6Ng01-126J14.b_52_1195

seq1  GAATTCATTTTGGATATTACAGTGCAAGTCGCTGTCATAGCAACCATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGGATATTACAGTGCAAGTCGCTGTCATAGCAACCATCCA  50

seq1  AAGATTCTTTGAACGAATCCCAAATATTTATGATCATTGTCATTCTGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCTTTGAACGAATCCCAAATATTTATGATCATTGTCATTCTGTAA  100

seq1  GTTCTGGCCATCCCAAAGTAGGTGTACTGTGTTTATGCTTGATGAAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGCCATCCCAAAGTAGGTGTACTGTGTTTATGCTTGATGAAAATT  150

seq1  TTCAGTTGATGATAAATTTTTGAGTAGTTTCACTGTCTAAATCCAGATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTGATGATAAATTTTTGAGTAGTTTCACTGTCTAAATCCAGATAG  200

seq1  GCAGTTGTTTTCTTTTAGCACATAAAATAATGTTATTCTGTTTCCTGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGTTTTCTTTTAGCACATAAAATAATGTTATTCTGTTTCCTGGTG  250

seq1  CCCAGTATTTCTAATAGCACACCAGTTCTTTGCCTCCTGCTCACTTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTATTTCTAATAGCACACCAGTTCTTTGCCTCCTGCTCACTTGGAT  300

seq1  ATGATAACTCTTTTATTTGGGGCAGGCTTTAGAACTCCTTTCCATACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAACTCTTTTATTTGGGGCAGGCTTTAGAACTCCTTTCCATACTTG  350

seq1  GCATTTTTGAATGTACTTAATTCAGCTATTTTTTTGGGCTTCTGCAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTTGAATGTACTTAATTCAGCTATTTTTTTGGGCTTCTGCAGTCA  400

seq1  TAACACTGACATATCAATGCTTCTCAGTTCTCACAACTTTCTAGTTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTGACATATCAATGCTTCTCAGTTCTCACAACTTTCTAGTTATTA  450

seq1  AGTCAAAGAACAGACTGCTTCAAAGTCATTTTAAGGGATGAGAAGATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAGAACAGACTGCTTCAAAGTCATTTTAAGGGATGAGAAGATATG  500

seq1  TGAGTTGGTAAAGTACTTGATTGCTTTGCAAGCATGAGGACCTGACTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGGTAAAGTACTTGATTGCTTTGCAAGCATGAGGACCTGACTTTG  550

seq1  CTCCCTACAGTTATGTAAGAGATCTGTGTTCCGAGCAAACTCTTGTAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTACAGTTATGTAAGAGATCTGTGTTCCGAGCAAACTCTTGTAATC  600

seq1  CCAGCACTAGGGGTAGAGGGTAAAGACAGGTATTCTTGGGACTCACTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTAGGGGTAGAGGGTAAAGACAGGTATTCTTGGGACTCACTGCC  650

seq1  CAGCCAATTTAGACTTCCTGACAATCCCCAGACCAAAGAGAGACCTTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAATTTAGACTTCCTGACAATCCCCAGACCAAAGAGAGACCTTGTC  700

seq1  TCAAACAAACAACAAGGAAACAAACAAACAGATGTGGGTGGCACCTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAAACAACAAGGAAACAAACAAACAGATGTGGGTGGCACCTGAGG  750

seq1  AATGACACTTGAGGTTGACTTGGACCTTCGTGTACACAGGCCCCATAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACACTTGAGGTTGACTTGGACCTTCGTGTACACAGGCCCCATAAGC  800

seq1  AGGCATACCCCTGCACATGTATCCTAACATGCAAATGCACACGCACACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATACCCCTGCACATGTATCCTAACATGCAAATGCACACGCACACAA  850

seq1  ACGTGAAACTGACCAGTTTTTACATTCATGGGAAATTGAGCAGACAGTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAAACTGACCAGTTTTTACATTCATGGGAAATTGAGCAGACAGTGC  900

seq1  TGAGTTCCCTTATATTTCAGTGTTAATGATCTGCAATAAGGTTTAGCTAC  950
      |||||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  TGAGTT-CCTTATATTTCAGTGTTAATGATCTGCAATAAGG-TTAGCTAC  948

seq1  ATTCTCCCCTCCCTTTCTTTTGGGAGATCTCATTACTGTATCTTTTGTTT  1000
      ||||| ||||||| ||||||  |||||||||||||||||||||||   ||
seq2  ATTCT-CCCTCCC-TTCTTT--GGAGATCTCATTACTGTATCTTT--GTT  992

seq1  TTTGGCTCCATTTTTCCTCTCCATCTACACACCATCCTTAAGATCTTTCA  1050
      ||||||| ||||||  |||| |||||||||||||||    ||||||||||
seq2  TTTGGCT-CATTTT--CTCT-CATCTACACACCATC---TAGATCTTTCA  1035

seq1  TCACATGGAAATTCTAAATTGAACAGGATGGACTTTCGAGATGTGCTTTC  1100
      ||||||||||| |||||  || ||| ||||||||||||||||| || |||
seq2  TCACATGGAAA-TCTAA--TG-ACA-GATGGACTTTCGAGATG-GC-TTC  1078

seq1  ATTCAGTAGTCCAGGATGTCTGGAAACTTAGATATCCTAAGCTGACTTTG  1150
      | |||||||||   ||||||||  ||||||   || |||||||||||   
seq2  A-TCAGTAGTC--AGATGTCTG--AACTTA---ATTCTAAGCTGACT---  1117

seq1  AACTCATTCTAGTCCTTTTATGTC-AACCTC  1180
       ||||| |||||    |||||||| ||||||
seq2  GACTCA-TCTAG---CTTTATGTCAAACCTC  1144

seq1: chr5_31842413_31843523
seq2: B6Ng01-126J14.g_69_1169 (reverse)

seq1  CAGTAGGCTTGCTGTCCTCTGGTTTATGTCTGCATACTCATCTTGTGGTC  50
      |||||||| ||||  ||||||| |||  || ||||||||||| || ||||
seq2  CAGTAGGC-TGCTTCCCTCTGG-TTAGATC-GCATACTCATC-TGGGGTC  46

seq1  ATGTCTGTTTCTCCGGAGTGTCCTCGTC-AGTTTCTTGGTATTTTTAACA  99
      | || || |||| ||||||||||||||| || ||||||||||||| ||||
seq2  AGGTTTG-TTCTACGGAGTGTCCTCGTCAAGATTCTTGGTATTTTAAACA  95

seq1  CTGTTCTGTATTATGTGTATGTTGCAGGTTGAGGCGTAGTACAGTGTGTG  149
      |||||||||| ||||  |||| |||| ||||| |||||||||||||||| 
seq2  CTGTTCTGTA-TATGGTTATG-TGCA-GTTGA-GCGTAGTACAGTGTGT-  140

seq1  GGGGTCAGAGGTCAACTTTGCAGAGTCACTTCTCTCCTTCCACCTTTCTG  199
      ||||||||| ||| || |||||||||||| ||||| |||| || ||||||
seq2  GGGGTCAGAAGTCCAC-TTGCAGAGTCACATCTCT-CTTCAACATTTCTG  188

seq1  TGGGCTCACAGGGTTTGAACAGGTGCTCAGACCTGACTGCCAAGTGCTTT  249
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGGGCTCACAGGGTTTGAACAAGTGCTCAGACCTGACTGCCAAGTGCTTT  238

seq1  TACCTGGTGAGCCATCTCGCCAGCCCAGTTTCATGGCACGTAAGGCAAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGTGAGCCATCTCGCCAGCCCAGTTTCATGGCACGTAAGGCAAGA  288

seq1  CCTAAAACTTAACTAGAACAGATATTTATAATTGTTCCTCTTCCTAGGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAACTTAACTAGAACAGATATTTATAATTGTTCCTCTTCCTAGGAC  338

seq1  TGAACTTCAGACTACAAATGCAGAAAACAAAACTAAGAAACTTGCATTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTCAGACTACAAATGCAGAAAACAAAACTAAGAAACTTGCATTGC  388

seq1  CTCTCTTTGGTGCCATGAAAGGAGGAAGCAAATTCAAATT-AAAAACTGG  448
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTCTCTTTGGTGCCATGAAAGGAGGAAGCAAATTCAAATTAAAAAACTGG  438

seq1  GACAGTAGGGGTAAGTTGTGAGTTAGAGTGTGTTGAACTCCTCGTCCTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAGGGGTAAGTTGTGAGTTAGAGTGTGTTGAACTCCTCGTCCTTG  488

seq1  AGCTATCCCTGAACTAGGTTTTCTGTCTTATTCCCTGGTTTTGTGAGAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCCCTGAACTAGGTTTTCTGTCTTATTCCCTGGTTTTGTGAGAAA  538

seq1  GGGCTGTTGGATTAGCATGAGCATCTCTTGCTGAGATTAGTGAACTGGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTTGGATTAGCATGAGCATCTCTTGCTGAGATTAGTGAACTGGAC  588

seq1  TGCAAAGATGGCTCAGGTGTCGCTCCCAAGTATGAAGTCCAGAGTTCGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGATGGCTCAGGTGTCGCTCCCAAGTATGAAGTCCAGAGTTCGGG  638

seq1  GCCCAGTACCCCGTGTAAAGTGAAGCATGGCCCTGTGCAGTGTGACCCCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTACCCCGTGTAAAGTGAAGCATGGCCCTGTGCAGTGTGACCCCA  688

seq1  GCACGGAGGGCTGCAAAGGCAGGGTTGCTGGGGCTTGCTGACTGACAGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGAGGGCTGCAAAGGCAGGGTTGCTGGGGCTTGCTGACTGACAGCC  738

seq1  TCGCTGGGCTGCAGGGTCAGTAAGCAGGGAGGTGGAGAGTGATGGAGGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGGGCTGCAGGGTCAGTAAGCAGGGAGGTGGAGAGTGATGGAGGAG  788

seq1  GACAGCTGACGCCTCCCCTGGCCTCGTGTGCACACAGACACAGGCGACTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTGACGCCTCCCCTGGCCTCGTGTGCACACAGACACAGGCGACTT  838

seq1  GGAAAGAACTCGGATATTTTTTTTTTAATTAGTTTATTAGTTTAGTTTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAACTCGGATATTTTTTTTTTAATTAGTTTATTAGTTTAGTTTCT  888

seq1  TTTCTTTTTTTTCTTTCTTTCTCCCCCTACCCCTTTTCTTTCAGCAGTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTTTTCTTTCTTTCTCCCCCTACCCCTTTTCTTTCAGCAGTCT  938

seq1  CACTGTGTAGCCCTGGCAGTCCTGAGCTAGTTTAATGTTTCTAATGTGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGTAGCCCTGGCAGTCCTGAGCTAGTTTAATGTTTCTAATGTGTG  988

seq1  CCATATTTAGGAATGAAGTGCCTATGGTGATATTTTTCCCCATGATTTAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTAGGAATGAAGTGCCTATGGTGATATTTTTCCCCATGATTTAC  1038

seq1  TTTGCTTACTGCTGGAATATTGTTTTTTCTCCTTATTTAAAAATAGTAGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTACTGCTGGAATATTGTTTTTTCTCCTTATTTAAAAATAGTAGT  1088

seq1  TCCCTGAGAATTC  1111
      |||||||||||||
seq2  TCCCTGAGAATTC  1101