BAC Information

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BAC

Clone NameB6Ng01-126M11
Chromosome5 (Build37)
Map Location 46,323,633 - 46,454,759
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126M11.bB6Ng01-126M11.g
ACCDH929060DH929061
length1,1871,012
definitionDH929060|Mus musculus domesticus DNA, BAC clone: B6Ng01-126M11, 5' end.DH929061|Mus musculus domesticus DNA, BAC clone: B6Ng01-126M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,453,553 - 46,454,759)(46,323,633 - 46,324,657)
sequence
gaattctcttagagcaatcattccttgcctacttttaaagtttatgtaag
ccttgctatatggtctgcacttgcctggaacttatcacgtaggccaggct
tttaaggaaatctcaagctgttctttcttaggtcttgtttttcagttcca
ggaattggactcagggccttgtacacactaggtatcactaaactatattt
ccagctccttgtctgcttttgatctttatcattagtagtagcgctggctg
agctggtaggagcaacagagttacaacagtagtgatgaagatgaagacag
gaaagaataatagaaagaaagaaaagggtgaaagaaaggaggatggtgag
ggtcaatggaggataaatagagagccaaggttgaatagagacagaaggct
ataaagaggtagagaagagaaagtataaatcatgatcagaggagaggaga
gttcaggagagttgacagaccttacatagtcaaaggtcttgcgcatccta
acctaagaactatcattctggctgctgctagctgggctgtgaagctgtga
ttgctgtcccaaaatctgtaacacttgtcactataagaatgaaaatctag
tgtcttagggctagaggagagctagaatagcaacaccagaaggtgctgct
atctatgacccctatgtctcactactaaaggaagctgaaatatcactaag
tttcaagtgttgaactgctggagcataaagcccaaagtgatagcctttaa
actaagtgcctacagtcaagtgtatctggtttttgaactgtggagctcct
agttttagggcttagactttacaagttggaagcctctgcagtgtgagcac
ttgtatccaggactagaagaccgtatttgtgttccataattcttacatag
taacataaaaagatccaaagtattgattggtggccaatctatctatgcta
ggatttcttgcagtcagcagcctaaatatttacaagattgtagaatcaga
gtggcaggagcctatgtctattatctgatctaaaatacaactcactaaat
catgtgactactcctgtaggacagaaatcagtattagtcagctgatagaa
ggcaggtcagcagtgtgctttctaggttatgaactgttttgaatcacatt
gacttgctgtttggtacactggacctcagggctggag
gaattccatagagatcagttctctgggccactgtgtagagacaatagttg
ggcactgttgctcggttgtgctgtgatgcgaatggttccatggagcctcc
cactttggaactcttcaaggtgttttgcatttataatattaattcgttca
tcaggaaagtgtaatgaatgctcaccattactgtcatgctgcagggcagc
ttagatccagagtggggtttgcaggactcaggcttgacgttaatattagc
tgtgaggccatggactaattagctacacgtaactatctttcttttcagta
aagtggaggagatccaatacttatcttgtcatgcatgtcatggctgtccc
aggggacacaaacaggaaatagtggcagcagttacgatccacaatcatca
ccatctctaattttcatgacagtctttgagctctaggtctaatatatggg
gaaactgaagttcaggtaagaaaggacatgcccaaatgatgacaatacgg
aaaagggtggagtcacactccgattctggagcctgtgctcattctctact
gataagttgatttttcatgcatctcccagaaggaatcttcgactgaaagt
cccgttcttcccagcctttctttatgtccagcataaatattaatgcagct
cccatctgccatcatgtaaaaacacttggtcaaatttattttagcaaatg
gagaaaatcgccttttgtttggtatgggtgtgatgtgtgttatacttgcc
tttgactacccagtttcatttctgcagtggttgcctagggaacaagcgta
tagcattggtaattaaaaaaaagggagggatgtaagttcaaagtggttag
atttgttggctgatttcaagtgtgacctctgtattgactggaaagaatgt
aatttcactttctctgagaaatagaattaaacgtggggaaattagagaag
tgatagatggtagaaatgaaaccttgtgtaaatttttctgcctgcagatc
aaactaggtaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_46453553_46454759
seq2: B6Ng01-126M11.b_46_1232 (reverse)

seq1  CTCCAG-CCTGA-GTCAAGTTGACACAAAACTAGCAAGTACAATTGGTGA  48
      |||||| ||||| ||| |||  || ||||   ||||||| ||||  ||||
seq2  CTCCAGCCCTGAGGTCCAGTGTAC-CAAA--CAGCAAGT-CAAT--GTGA  44

seq1  TTTCAAAACACGGTCATTTAACTTTAGGAAAGCACACTGCTGACCCTGCC  98
       ||||||||| | |||  |||| |   |||||||||||||||| ||||||
seq2  -TTCAAAACA-GTTCA--TAACCT--AGAAAGCACACTGCTGA-CCTGCC  87

seq1  TTTCTATCAGCTGACTACTACTGATTTCTGGTCCTACAAGAAGTATGTCA  148
       |||||||||||||||| ||||||||||| ||||||| || |||| ||||
seq2  -TTCTATCAGCTGACTAATACTGATTTCT-GTCCTAC-AGGAGTA-GTCA  133

seq1  CATGAATTTAGTGAGTTGTATTTTAGGATCAGAT-ATAGACCTTGGCTCC  197
      |||| |||||||||||||||||||| |||||||| |||||| | ||||||
seq2  CATG-ATTTAGTGAGTTGTATTTTA-GATCAGATAATAGACATAGGCTCC  181

seq1  TGCCACTCTGATTCTACAATCTTGTAAATATTTAGGCTGCTGACTTGCAA  247
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGCCACTCTGATTCTACAATCTTGTAAATATTTAGGCTGCTGAC-TGCAA  230

seq1  GAAATTCTTAGCATAGATAGATTGGCCACCAATCAAATACTTTGGATCTT  297
      |||| || |||||||||||||||||||||||||| |||||||||||||||
seq2  GAAA-TCCTAGCATAGATAGATTGGCCACCAATC-AATACTTTGGATCTT  278

seq1  TTTATGTTACTATGTAAGAATTATGGAACACAAATACGGTCTTCTAGTCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTACTATGTAAGAATTATGGAACACAAATACGGTCTTCTAGTCC  328

seq1  TGGATTACAAGTGCTCACACTGCAGAGGCTTCCAACTTGTAAAGTCTAAG  397
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGA-TACAAGTGCTCACACTGCAGAGGCTTCCAACTTGTAAAGTCTAAG  377

seq1  CCCTAAAACTAGGAGCTCCACAGTTCAAAAACCAGATACACTTGACTGTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAACTAGGAGCTCCACAGTTCAAAAACCAGATACACTTGACTGTA  427

seq1  GGCACTTAGTTTAAAGGCTATCACTTTGGGCTTTATGCTCCAGCAGTTCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTAGTTTAAAGGCTATCACTTTGGGCTTTATGCTCCAGCAGTTCA  477

seq1  ACACTTGAAACTTAGTGATATTTCAGCTTCCTTTAGTAGTGAGACATAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGAAACTTAGTGATATTTCAGCTTCCTTTAGTAGTGAGACATAGG  527

seq1  GGTCATAGATAGCAGCACCTTCTGGTGTTGCTATTCTAGCTCTCCTCTAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATAGATAGCAGCACCTTCTGGTGTTGCTATTCTAGCTCTCCTCTAG  577

seq1  CCCTAAGACACTAGATTTTCATTCTTATAGTGACAAGTGTTACAGATTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGACACTAGATTTTCATTCTTATAGTGACAAGTGTTACAGATTTT  627

seq1  GGGACAGCAATCACAGCTTCACAGCCCAGCTAGCAGCAGCCAGAATGATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGCAATCACAGCTTCACAGCCCAGCTAGCAGCAGCCAGAATGATA  677

seq1  GTTCTTAGGTTAGGATGCGCAAGACCTTTGACTATGTAAGGTCTGTCAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAGGTTAGGATGCGCAAGACCTTTGACTATGTAAGGTCTGTCAAC  727

seq1  TCTCCTGAACTCTCCTCTCCTCTGATCATGATTTATACTTTCTCTTCTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGAACTCTCCTCTCCTCTGATCATGATTTATACTTTCTCTTCTCT  777

seq1  ACCTCTTTATAGCCTTCTGTCTCTATTCAACCTTGGCTCTCTATTTATCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTTATAGCCTTCTGTCTCTATTCAACCTTGGCTCTCTATTTATCC  827

seq1  TCCATTGACCCTCACCATCCTCCTTTCTTTCACCCTTTTCTTTCTTTCTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGACCCTCACCATCCTCCTTTCTTTCACCCTTTTCTTTCTTTCTA  877

seq1  TTATTCTTTCCTGTCTTCATCTTCATCACTACTGTTGTAACTCTGTTGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTTCCTGTCTTCATCTTCATCACTACTGTTGTAACTCTGTTGCT  927

seq1  CCTACCAGCTCAGCCAGCGCTACTACTAATGATAAAGATCAAAAGCAGAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCAGCTCAGCCAGCGCTACTACTAATGATAAAGATCAAAAGCAGAC  977

seq1  AAGGAGCTGGAAATATAGTTTAGTGATACCTAGTGTGTACAAGGCCCTGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCTGGAAATATAGTTTAGTGATACCTAGTGTGTACAAGGCCCTGA  1027

seq1  GTCCAATTCCTGGAACTGAAAAACAAGACCTAAGAAAGAACAGCTTGAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAATTCCTGGAACTGAAAAACAAGACCTAAGAAAGAACAGCTTGAGA  1077

seq1  TTTCCTTAAAAGCCTGGCCTACGTGATAAGTTCCAGGCAAGTGCAGACCA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTAAAAGCCTGGCCTACGTGATAAGTTCCAGGCAAGTGCAGACCA  1127

seq1  TATAGCAAGGCTTACATAAACTTTAAAAGTAGGCAAGGAATGATTGCTCT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAAGGCTTACATAAACTTTAAAAGTAGGCAAGGAATGATTGCTCT  1177

seq1  AAGAGAATTC  1207
      ||||||||||
seq2  AAGAGAATTC  1187

seq1: chr5_46323633_46324657
seq2: B6Ng01-126M11.g_71_1082

seq1  GAATTCCATAGAGATCAGTTCTCTGGGCCACTGTGTAGAGACAATAGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGAGATCAGTTCTCTGGGCCACTGTGTAGAGACAATAGTTG  50

seq1  GGCACTGTTGCTCGGTTGTGCTGTGATGCGAATGGTTCCATGGAGCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGTTGCTCGGTTGTGCTGTGATGCGAATGGTTCCATGGAGCCTCC  100

seq1  CACTTTGGAACTCTTCAAGGTGTTTTGCATTTATAATATTAATTCGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGGAACTCTTCAAGGTGTTTTGCATTTATAATATTAATTCGTTCA  150

seq1  TCAGGAAAGTGTAATGAATGCTCACCATTACTGTCATGCTGCAGGGCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAAGTGTAATGAATGCTCACCATTACTGTCATGCTGCAGGGCAGC  200

seq1  TTAGATCCAGAGTGGGGTTTGCAGGACTCAGGCTTGACGTTAATATTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCCAGAGTGGGGTTTGCAGGACTCAGGCTTGACGTTAATATTAGC  250

seq1  TGTGAGGCCATGGACTAATTAGCTACACGTAACTATCTTTCTTTTCAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGCCATGGACTAATTAGCTACACGTAACTATCTTTCTTTTCAGTA  300

seq1  AAGTGGAGGAGATCCAATACTTATCTTGTCATGCATGTCATGGCTGTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAGGAGATCCAATACTTATCTTGTCATGCATGTCATGGCTGTCCC  350

seq1  AGGGGACACAAACAGGAAATAGTGGCAGCAGTTACGATCCACAATCATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACACAAACAGGAAATAGTGGCAGCAGTTACGATCCACAATCATCA  400

seq1  CCATCTCTAATTTTCATGACAGTCTTTGAGCTCTAGGTCTAATATATGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTAATTTTCATGACAGTCTTTGAGCTCTAGGTCTAATATATGGG  450

seq1  GAAACTGAAGTTCAGGTAAGAAAGGACATGCCCAAATGATGACAATACGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGAAGTTCAGGTAAGAAAGGACATGCCCAAATGATGACAATACGG  500

seq1  AAAAGGGTGGAGTCACACTCCGATTCTGGAGCCTGTGCTCATTCTCTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGTGGAGTCACACTCCGATTCTGGAGCCTGTGCTCATTCTCTACT  550

seq1  GATAAGTTGATTTTTCATGCATCTCCCAGAAGGAATCTTCGACTGAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTTGATTTTTCATGCATCTCCCAGAAGGAATCTTCGACTGAAAGT  600

seq1  CCCGTTCTTCCCAGCCTTTCTTTATGTCCAGCATAAATATTAATGCAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTCTTCCCAGCCTTTCTTTATGTCCAGCATAAATATTAATGCAGCT  650

seq1  CCCATCTGCCATCATGTAAAAACACTTGGTCAAATTTATTTTAGCAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTGCCATCATGTAAAAACACTTGGTCAAATTTATTTTAGCAAATG  700

seq1  GAGAAAATCGCCTTTTGTTTGGTATGGGTGTGATGTGTGTTATACTTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATCGCCTTTTGTTTGGTATGGGTGTGATGTGTGTTATACTTGCC  750

seq1  TTTGACTACCCAG-TTCATTTCTGCAGTGGTTGCCTAGGGAACAAGCGTA  799
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTGACTACCCAGTTTCATTTCTGCAGTGGTTGCCTAGGGAACAAGCGTA  800

seq1  TAGCATTGGTAATTAAAAAAAAAGGGAGGGATGTAAGTTCAAAGTGGTTA  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAGCATTGGTAATT-AAAAAAAAGGGAGGGATGTAAGTTCAAAGTGGTTA  849

seq1  GAATTGTTGGCTGAATTTCAAGTGGTGACCTCTGTATTGACTGGAAAGAA  899
      || |||||||||| ||||||||| |||||||||||||||||||||||| |
seq2  GATTTGTTGGCTG-ATTTCAAGT-GTGACCTCTGTATTGACTGGAAAG-A  896

seq1  ATGTAATTTCACTTTCTCTGTAGAAATAGAATTAAAGGTGGGGAAAATTA  949
      |||||||||||||||||||| ||||||||||||||| |||||| ||||||
seq2  ATGTAATTTCACTTTCTCTG-AGAAATAGAATTAAACGTGGGG-AAATTA  944

seq1  GAGAAGTTGAAAAGAATTGGTAGAAAATGAAAACCTTGTTGTAGATTTTT  999
      |||||||   | |||  |||||| ||||| |||||||| |||| ||||||
seq2  GAGAAGT--GATAGA--TGGTAG-AAATG-AAACCTTG-TGTAAATTTTT  987

seq1  CTGCCTGCAGTTCAAAACTAGGTAAC  1025
      |||||||||| || ||||||||||||
seq2  CTGCCTGCAGATC-AAACTAGGTAAC  1012