BAC Information

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BAC

Clone NameB6Ng01-127F03
Chromosome5 (Build37)
Map Location 58,744,501 - 58,835,530
singlet/doubletdoublet
Overlap geneLOC100041385
Upstream geneLOC625721, EG666465, Pcdh7
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127F03.bB6Ng01-127F03.g
ACCDH929467DH929468
length1,126832
definitionDH929467|Mus musculus domesticus DNA, BAC clone: B6Ng01-127F03, 5' end.DH929468|Mus musculus domesticus DNA, BAC clone: B6Ng01-127F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,834,385 - 58,835,530)(58,744,501 - 58,745,344)
sequence
gaattctatgatccacaccaatacagttcagagtttcgagctcctttaca
gtgattgctttcccacggtcacatttgcacctggattctctctcctctta
aacgcctgggttaataaaggatgtgaaagatgaatatgatatgtttattt
gtatcatagtaatgtgaatttttaaaaatgtagttgagctttgagtctct
atgattccattgagaacatattatttctgagtttcatgtcaattcaacta
aacaatttcctatcaagatgcgatcttcacaggagggataaaacttctgg
taactgttaatatcaaggaattttcagagattctgaatagaatccattcc
tacttataaaacttttgataattgctaatatcaaggacttttcacacaat
ctatgtagattccattcctacctataatacttttggtaaattttaatatc
aaagaattttcagtctatgtagactccattcctatctaagctcggaatat
ttcatcgtgtaattatctttttgtgtgtttttaattatttgcattgaacc
tagcacatctataagcacttgggatagaggattaaaacaaaacatattct
gacctctagtgaggttatatttttcttaccttcatggcattgtgatttca
aaataagtacttctgaacaattaatcttgagaggctatttttatattttt
ctttgttttgctttcagattctccatcacatgtcagggtaaaatgcggat
tgtgtactgaaaacaggatgggaatatttcacctttcttacacaaaccag
agaaccttggaacttctaaatcagtaggcaaactatgtttggacaacaat
acaacacaattgtatatgattatcaaattcaatatttactcaaaggataa
agggctggttagggacagtttcatggccatatgctgaagattataaaaca
gtgtcatagatgaacctgaacaataatctattacattggccattatgaga
agattaactctttgctctttctgtataaccaagtacatgaaatatctgta
gctatgttagggatttgactggaagctacatattcctagtcacatgtggt
ctgagacttgatgactgaaaaccctt
gaattctgcttacagttccagatctaattctagcactggaggaagtcagg
ttaggaactcaaacagggcaggatcctagaggcagaggctgataaaatgc
catcgaagtatgcttcttactgacttgcttcacatggctcactcagccta
ctttctcatagaatccagtaccaccagcccagggatgacactattcacag
tgggctgggtaaataagaacacacagcgttatagaaacatttttctcagt
tgaggctccttcttccacaatgaaactagcttgttgccttttggcataaa
cctagccagtacactgttatatctggatagtactgtttgtttagagatgt
ttactgacattggttcttagaatattttcctacacggcttcacaatagct
cattgaaatttttgagggtgtatgatacagatattccacttagggctgag
taatgtgcaggcttatattcttacatcttaacgagagtgtttctgttaat
agtcaactgctgcagtagtatttctgatgagattttgagagacgtcttac
ttggccattgcctcagcctcacattgtaaaattggtttatataagtgggt
tctgggtttggctgtaagactgagtatatgttcctacgtgctggaaggtc
caagccttcttggctgattcatctgaattgaagaatgctgctcctgtgct
actgcagccttcaagcccaggatgagcccaggagattcgatgaggacacc
gaattcttttcttaactagtcattcacgaacccgcctcgtcagcttaatc
tagaaaatggaaataatacttatttctcttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58834385_58835530
seq2: B6Ng01-127F03.b_46_1171 (reverse)

seq1  AAGGGTTATCAGTCAATCAAGTCTCAGACCACATGTGAACTATGAATATG  50
      ||||||| |||||| |||||||||||||||||||||| |||| |||||||
seq2  AAGGGTTTTCAGTC-ATCAAGTCTCAGACCACATGTG-ACTAGGAATATG  48

seq1  TTAGCTCTCAAGTCAAAATTCCCTTAAACATAGCTACAAATAATTTCCAT  100
       ||||| || |||||||  |||||  |||||||||||| |||  || |||
seq2  -TAGCT-TCCAGTCAAA--TCCCT--AACATAGCTACAGATA--TTTCAT  90

seq1  GTACTTGGTTTATTACAGAAAGGAGCAAAAGAGTTTAATCTGTCTCATAA  150
      ||||||||||   |||||||| |||| |||||| ||||||| ||||||||
seq2  GTACTTGGTT--ATACAGAAA-GAGC-AAAGAG-TTAATCT-TCTCATAA  134

seq1  TGGCCAATGTAAATAGATTATTTGTTCCAGGTTCATTCTATGACACTGTT  200
      |||||||||| ||||||||| ||||| |||||||| ||||||||||||||
seq2  TGGCCAATGT-AATAGATTA-TTGTT-CAGGTTCA-TCTATGACACTGTT  180

seq1  TTATAATCTTCAGCATATTGCCATGAAACTTGTCCCTAACCAGGCCTTTA  250
      |||||||||||||||||| |||||||||| ||||||||||||| ||||||
seq2  TTATAATCTTCAGCATATGGCCATGAAAC-TGTCCCTAACCAGCCCTTTA  229

seq1  TCCTTTGAGTAAATATTGAATTTGATAATCATATACAATTGTGTTGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGAGTAAATATTGAATTTGATAATCATATACAATTGTGTTGTATT  279

seq1  GTTGTCCAAACATAGTTTGCCTACTGATTTAGAAGTTCCAAGGTTCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCCAAACATAGTTTGCCTACTGATTTAGAAGTTCCAAGGTTCTCTG  329

seq1  GTTTGTGTAAGAAAGGTGAAATATTCCCATCCTGTTTTCAGTACACAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGTAAGAAAGGTGAAATATTCCCATCCTGTTTTCAGTACACAATC  379

seq1  CGCATTTTACCCTGACATGTGATGGAGAATCTGAAAGCAAAACAAAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATTTTACCCTGACATGTGATGGAGAATCTGAAAGCAAAACAAAGAAA  429

seq1  AATAT-AAAATAGCCTCTCAAGATTAATTGTTCAGAAGTACTTATTTTGA  499
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAAATAGCCTCTCAAGATTAATTGTTCAGAAGTACTTATTTTGA  479

seq1  AATCACAATGCCATGAAGGTAAGAAAAATATAACCTCACTAGAGGTCAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAATGCCATGAAGGTAAGAAAAATATAACCTCACTAGAGGTCAGA  529

seq1  ATATGTTTTGTTTTAATCCTCTATCCCAAGTGCTTATAGATGTGCTAGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTTGTTTTAATCCTCTATCCCAAGTGCTTATAGATGTGCTAGGT  579

seq1  TCAATGCAAATAATTAAAAACACACAAAAAGATAATTACACGATGAAATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCAAATAATTAAAAACACACAAAAAGATAATTACACGATGAAATA  629

seq1  TTCCGAGCTTAGATAGGAATGGAGTCTACATAGACTGAAAATTCTTTGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGAGCTTAGATAGGAATGGAGTCTACATAGACTGAAAATTCTTTGAT  679

seq1  ATTAAAATTTACCAAAAGTATTATAGGTAGGAATGGAATCTACATAGATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATTTACCAAAAGTATTATAGGTAGGAATGGAATCTACATAGATT  729

seq1  GTGTGAAAAGTCCTTGATATTAGCAATTATCAAAAGTTTTATAAGTAGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAAAGTCCTTGATATTAGCAATTATCAAAAGTTTTATAAGTAGGA  779

seq1  ATGGATTCTATTCAGAATCTCTGAAAATTCCTTGATATTAACAGTTACCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTCTATTCAGAATCTCTGAAAATTCCTTGATATTAACAGTTACCA  829

seq1  GAAGTTTTATCCCTCCTGTGAAGATCGCATCTTGATAGGAAATTGTTTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTTATCCCTCCTGTGAAGATCGCATCTTGATAGGAAATTGTTTAG  879

seq1  TTGAATTGACATGAAACTCAGAAATAATATGTTCTCAATGGAATCATAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTGACATGAAACTCAGAAATAATATGTTCTCAATGGAATCATAGA  929

seq1  GACTCAAAGCTCAACTACATTTTTAAAAATTCACATTACTATGATACAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAAGCTCAACTACATTTTTAAAAATTCACATTACTATGATACAAA  979

seq1  TAAACATATCATATTCATCTTTCACATCCTTTATTAACCCAGGCGTTTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATATCATATTCATCTTTCACATCCTTTATTAACCCAGGCGTTTAA  1029

seq1  GAGGAGAGAGAATCCAGGTGCAAATGTGACCGTGGGAAAGCAATCACTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGAGAATCCAGGTGCAAATGTGACCGTGGGAAAGCAATCACTGT  1079

seq1  AAAGGAGCTCGAAACTCTGAACTGTATTGGTGTGGATCATAGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGCTCGAAACTCTGAACTGTATTGGTGTGGATCATAGAATTC  1126

seq1: chr5_58744501_58745344
seq2: B6Ng01-127F03.g_70_901

seq1  GAATTCTGCTTACAGTTCCAGATCTAATTCTAGCACTGGAGGAAGTCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTACAGTTCCAGATCTAATTCTAGCACTGGAGGAAGTCAGG  50

seq1  TTAGGAACTCAAACAGGGCAGGATCCTAGAGGCAGAGGCTGATAAAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAACTCAAACAGGGCAGGATCCTAGAGGCAGAGGCTGATAAAATGC  100

seq1  CATCGAAGTATGCTTCTTACTGACTTGCTTCACATGGCTCACTCAGCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGAAGTATGCTTCTTACTGACTTGCTTCACATGGCTCACTCAGCCTA  150

seq1  CTTTCTCATAGAATCCAGTACCACCAGCCCAGGGATGACACTATTCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCATAGAATCCAGTACCACCAGCCCAGGGATGACACTATTCACAG  200

seq1  TGGGCTGGGTAAATAAGAACACACAGCGTTATAGAAACATTTTTCTCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGGGTAAATAAGAACACACAGCGTTATAGAAACATTTTTCTCAGT  250

seq1  TGAGGCTCCTTCTTCCACAATGAAACTAGCTTGTTGCCTTTTGGCATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTCCTTCTTCCACAATGAAACTAGCTTGTTGCCTTTTGGCATAAA  300

seq1  CCTAGCCAGTACACTGTTATATCTGGATAGTACTGTTTGTTTAGAGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCCAGTACACTGTTATATCTGGATAGTACTGTTTGTTTAGAGATGT  350

seq1  TTACTGACATTGGTTCTTAGAATATTTTCCTACACGGTTTCACAATAGCT  400
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTACTGACATTGGTTCTTAGAATATTTTCCTACACGGCTTCACAATAGCT  400

seq1  CATTGAAATTTTTGAGGGTGTATGATACAGATATTCCACTTAGGGCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAATTTTTGAGGGTGTATGATACAGATATTCCACTTAGGGCTGAG  450

seq1  TAATGTGCAGGCTTATATTCTTACATCTTAACGAGAGTGTTTCTGTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGCAGGCTTATATTCTTACATCTTAACGAGAGTGTTTCTGTTAAT  500

seq1  AGTCAACTGCTGCAGTAGTATTTCTGATGAGA-TTTGAGAGACGTCTTAC  549
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGTCAACTGCTGCAGTAGTATTTCTGATGAGATTTTGAGAGACGTCTTAC  550

seq1  TTGGCCATTGCCTCAGCCTCACATTGTAAAATTGGTTTATATAAGTGGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCATTGCCTCAGCCTCACATTGTAAAATTGGTTTATATAAGTGGGT  600

seq1  TCTGGGTTTGGCTGTAAAGACTGAGTATATGTTCCTACTTGCTGGAAAGG  649
      ||||||||||||||| |||||||||||||||||||||| |||||| ||||
seq2  TCTGGGTTTGGCTGT-AAGACTGAGTATATGTTCCTACGTGCTGG-AAGG  648

seq1  TCCAAGCCTTCTTGGCTGATTCATCTGAATTTGAGTATGCTGTTCCTGTT  699
      |||||||||||||||||||||||||||||||  || |||||| ||||| |
seq2  TCCAAGCCTTCTTGGCTGATTCATCTGAATTGAAGAATGCTGCTCCTG-T  697

seq1  GCTACTGCAGCC-TCAAGCCCAGGATGAAGCCAAGGAAGAGTCAGATGAG  748
      |||||||||||| |||||||||||||| |||| ||| ||| || ||||||
seq2  GCTACTGCAGCCTTCAAGCCCAGGATG-AGCCCAGG-AGATTC-GATGAG  744

seq1  GACAACAGATTTCTTTTCTTTAACTAAGCCATTCAACGAAACCAGCTCAG  798
      ||| || || |||||||| |||||| || ||||| ||||| ||  ||| |
seq2  GAC-ACCGAATTCTTTTC-TTAACT-AGTCATTC-ACGAACCCGCCTC-G  789

seq1  CCAGCTTAATCTGAGAAAAATGGAAATAAAGACTTATTTCTCTTAA  844
       ||||||||||| || ||||||||||| || |||||||||||||||
seq2  TCAGCTTAATCT-AG-AAAATGGAAAT-AATACTTATTTCTCTTAA  832