BAC Information

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BAC

Clone NameB6Ng01-127H04
Chromosome5 (Build37)
Map Location 94,884,901 - 95,107,666
singlet/doubletdoublet
Overlap geneLOC100041102, LOC665560, LOC100041115, LOC624507, LOC621203
Upstream geneLOC100040885, LOC666064, LOC100040909, C87414, LOC666075, LOC666077, LOC666081, EG665802, LOC100040408, LOC100040981, EG622719, LOC100041003, BC061212, EG622744, LOC100041032, LOC100041042, LOC624421, AA792892, LOC665521, LOC665551
Downstream geneLOC100041153, LOC665499, LOC624698, LOC100041179, LOC624655, LOC100041166, LOC665469, LOC622894, EG666121, LOC666125, EG666133, LOC100041296, LOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127H04.bB6Ng01-127H04.g
ACCDH929563DH929564
length1,151985
definitionDH929563|Mus musculus domesticus DNA, BAC clone: B6Ng01-127H04, 5' end.DH929564|Mus musculus domesticus DNA, BAC clone: B6Ng01-127H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,106,506 - 95,107,666)(94,884,901 - 94,885,898)
sequence
gaattcagctatgagacacacagatgtaaggagagaaatcacttcagtat
ctcatggtttctagaccaccaacacattcttgggatccaggtaaaatatg
aagacctagatggaatataagacctaggtaactgctacatattgggatat
aacaaaataaagatatagagcaaaaagagccattgaaaaaccatgagaaa
ttcatatagatgcaggacatgttcacacacagtagattccaataaaaacc
caacattggtagccataatatatgagcaaaggtcccaaaggtgataaaga
cactgtaggaagtccaacagagtcaatcaactgggacctttgatgctctc
agaaactgaacccccaaccaaagaacacacatgggcttggaataggcctc
cccacacagatgtacagcttggtcttcatgtgggtcccctaacagctgga
gtggaggcctccttcaaaatctgttgcctgtatgtgggacatgttcttct
atttgagctgctttgtctggactcagtgagagaggatatgccctgccttg
aaaatacttaaagtacaagggtgtggaaatacacagggagcctccactca
cttagaggagatggtaagaaggcacctagatggagtgtgctagggtgtga
ccctgaagagaacagctagtgggttttaagataaataagcaaaaaaaaaa
aaaaaagataaaaggcctgacaaaacattatgagacctaggacctccaaa
gaggcccctgagttcattttgtgttggcctgcagacctgcccatctgaat
gggatctgtatcctcaggagacttcatttgagagaactactttttcgttt
gttattaatagtttctgggtttgggactggagcttgtgtctatttctttt
ctctacactgatatgccatgcagtatagaccatcacaggccctgagaatt
ctcttagtctctctgagtcatatgtgcatagttctcctgtgtttaagaag
gctgactgctgtgtccaccatccctaacctgaccacaccatttaaatgtt
tgaaaacatttagtacagctcagctttcattgcactttcattacagtcca
ggggttcaatggattcttgccctttaactcgaactcattgaactgggaac
a
gaattcaagaaggtaggctccagaaaaacaaataaccccattaaaaaatg
gggctcagagctgaacaaagaattctcacctgaggaataccgaatggcag
agaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaa
atcaaaacaaccctgagattccacctcacaccagtcagaatggctaagat
caaaaattcattttccattctttatgctgccattttgtcctattgatgct
gtcttttgccttacagaggatattcagtttcatgaagcccatttattgtt
gatcttaatgcatgagctatggttgttctgtgcagtaattagtcaacttt
tactataagtttgagagccctgacaccattaatgatattcttcaaccagt
agcaattaggagtggaggatataaaactatttacactactactgttttgt
tttcctctaatctgattgtgactgtgccccttttcttttctcttgaagta
aatagtatttcatatgcaagggccaccatgagatatagcctaaaaaggaa
gctcctgttactcgaaactcgggatcactgagcaagagtgagggagagtg
actggcatttctttcttttcctttctttcctcttcgtttccttttttgat
attatatttattagatattttctttatttatatttcaaatgttaccccct
ttcctagtttcccctccaaaaatcccctatctcctacccctccccatgtt
cacgagcccacccactcccattgcttgtcctggcaatcccctatattgag
gcagagagtcttagcaggaccaagggacttctcctcccattgatgaccaa
ctaggccatcctctgctacaaatatagctaaggcttcaacttccaccatg
tgttttcttggttgtgtatagctcaggagctctgagtgtactgatagtca
atgatgttcttctatgagctcagtctctcagctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_95106506_95107666
seq2: B6Ng01-127H04.b_46_1196 (reverse)

seq1  TGTTCCCAGTTCATGTGAGTCTGAGTAGAGGCTCAGAAATCCAGTGACAC  50
      |||||||||||||  |||||  ||||  | |  ||  |||||| |||  |
seq2  TGTTCCCAGTTCA-ATGAGTTCGAGTTAAAGGGCAAGAATCCATTGAACC  49

seq1  CTTGGACTGTAATAGAAAGTGCAATGAAAGCCTGAGCTGTACTAAAATGT  100
      | ||||||||||| |||||||||||||||| |||||||||||| ||||||
seq2  CCTGGACTGTAAT-GAAAGTGCAATGAAAG-CTGAGCTGTACT-AAATGT  96

seq1  TTTCAAAACAATTTAAATGGTGT-GTCAGGGTTAGGGATATTGGACACCA  149
      |||||||   ||||||||||||| |||| ||||||||||  |||||||  
seq2  TTTCAAA--CATTTAAATGGTGTGGTCA-GGTTAGGGATGGTGGACAC--  141

seq1  AGCAAGTCAGCCCTTCTTAAACACAGGAGAACTAATGCACATATGAACTC  199
      ||| |||||| |||||||||||||||||||||| ||||||||||| ||||
seq2  AGC-AGTCAG-CCTTCTTAAACACAGGAGAACT-ATGCACATATG-ACTC  187

seq1  AGAGAGACTAAAGGAGAATTCTCAGGGCCTGTGATGGTCTATACTGCATG  249
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACTAA--GAGAATTCTCAGGGCCTGTGATGGTCTATACTGCATG  235

seq1  GCATATCAGTGTAGAGAAAAGAAATAGACACAAGCTCCAATCCCAAACCC  299
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCATATCAGTGTAGAGAAAAGAAATAGACACAAGCTCCAGTCCCAAACCC  285

seq1  AGAAACTATTAATAACAAACGAAAAATTAGTTCTCTCAAATGAAGTCTCC  349
      |||||||||||||||||||||||||| ||||||||||||||||||||| |
seq2  AGAAACTATTAATAACAAACGAAAAAGTAGTTCTCTCAAATGAAGTCT-C  334

seq1  CTGAGGATACAGATCCCATTCAGATGGGCAGGTCTGCAGGCCAACACAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGATACAGATCCCATTCAGATGGGCAGGTCTGCAGGCCAACACAAA  384

seq1  ATGAACTCAGGGGCCTCTTTGGAGGTCCTAGGTCTCATAATGTTTTGTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTCAGGGGCCTCTTTGGAGGTCCTAGGTCTCATAATGTTTTGTCA  434

seq1  GGCCTT-----TTTTTTTTTTTTTCTTGCTTATTTATCTTAAAACCCACT  494
      ||||||     ||||||||||||| |||||||||||||||||||||||||
seq2  GGCCTTTTATCTTTTTTTTTTTTTTTTGCTTATTTATCTTAAAACCCACT  484

seq1  AGCTGTTCTCTCCAGGGTCACACCCTAGCACACTCCGTCTAGGTGCCTTC  544
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  AGCTGTTCTCTTCAGGGTCACACCCTAGCACACTCCATCTAGGTGCCTTC  534

seq1  TTACCATCTCCTCTAAGTGAGTGGAGGCTCCCTGTGTATTTCCACACCCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATCTCCTCTAAGTGAGTGGAGGCTCCCTGTGTATTTCCACACCCT  584

seq1  TGTACTTTAAGTATTTTCAAGGCAGGGCATATCCTCTCTCACTGAGTCCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTTAAGTATTTTCAAGGCAGGGCATATCCTCTCTCACTGAGTCCA  634

seq1  GACAAAGCAGCTCAAATAGAAGAACATGTCCCACATACAGGCAACAGATT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGCAGCTCAAATAGAAGAACATGTCCCACATACAGGCAACAGATT  684

seq1  TTGAAGGAGGCCTCCACTCCAGCTGTTAGGGGACCCACATGAAGACCAAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGAGGCCTCCACTCCAGCTGTTAGGGGACCCACATGAAGACCAAG  734

seq1  CTGTACATCTGTGTGGGGAGGCCTATTCCAAGCCCATGTGTGTTCTTTGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACATCTGTGTGGGGAGGCCTATTCCAAGCCCATGTGTGTTCTTTGG  784

seq1  TTGGGGGTTCAGTTTCTGAGAGCATCAAAGGTCCCAGTTGATTGACTCTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGTTCAGTTTCTGAGAGCATCAAAGGTCCCAGTTGATTGACTCTG  834

seq1  TTGGACTTCCTACAGTGTCTTTATCACCTTTGGGACCTTTGCTCATATAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACTTCCTACAGTGTCTTTATCACCTTTGGGACCTTTGCTCATATAT  884

seq1  TATGGCTACCAATGTTGGGTTTTTATTGGAATCTACTGTGTGTGAACATG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTACCAATGTTGGGTTTTTATTGGAATCTACTGTGTGTGAACATG  934

seq1  TCCTGCATCTATATGAATTTCTCATGGTTTTTCATTGGCTCTTTTTGCTA  994
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  TCCTGCATCTATATGAATTTCTCATGGTTTTTCAATGGCTCTTTTTGCTC  984

seq1  TATATCTTTATTTTGTTATATCCCAATATGTAGCAGTTACCTAGGTCTTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTTATTTTGTTATATCCCAATATGTAGCAGTTACCTAGGTCTTA  1034

seq1  TATTCCATCTAGGTCTTCATATTTTACCTGGATCCCAAGAATGTGTTGGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCATCTAGGTCTTCATATTTTACCTGGATCCCAAGAATGTGTTGGT  1084

seq1  GGTCTAGAAACCATGAGATACTGAAGTGATTTCTCTCCTTACATCTGTGT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAGAAACCATGAGATACTGAAGTGATTTCTCTCCTTACATCTGTGT  1134

seq1  GTCTCATAGCTGAATTC  1161
      |||||||||||||||||
seq2  GTCTCATAGCTGAATTC  1151

seq1: chr5_94884901_94885898
seq2: B6Ng01-127H04.g_65_1049

seq1  GAATTCAAGAAGGTGGGCTCCAGAAAAACAAATAACCCCATTAAAAAATG  50
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAGGTAGGCTCCAGAAAAACAAATAACCCCATTAAAAAATG  50

seq1  GGGCTCAGAGCTGAACAAAGAATTCTCACCTGAGGAATACCGAATGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAGAGCTGAACAAAGAATTCTCACCTGAGGAATACCGAATGGCAG  100

seq1  AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA  150

seq1  ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT  200

seq1  CAAAAATTCATTTTCCATTCTTTATGCTGCCATTTTGTCCTATTGATGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTCATTTTCCATTCTTTATGCTGCCATTTTGTCCTATTGATGCT  250

seq1  GTCTTTTGCCTTACAGAGGATATTCAGTTTCATGAAGCCCATTTATTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTGCCTTACAGAGGATATTCAGTTTCATGAAGCCCATTTATTGTT  300

seq1  GATCTTAATGCATGAGCTATGGTTGTTCTGTGCAGTAATTAGTCAACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAATGCATGAGCTATGGTTGTTCTGTGCAGTAATTAGTCAACTTT  350

seq1  TACTATAAGTTTGAGAGCCCTGACACCATTAATGATATTCTTCAACCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATAAGTTTGAGAGCCCTGACACCATTAATGATATTCTTCAACCAGT  400

seq1  AGCAATTAGGAGTGGAGGATATAAAACTATTTACACTACTACTGTTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTAGGAGTGGAGGATATAAAACTATTTACACTACTACTGTTTTGT  450

seq1  TTTCCTCTAATCTGATTGTGACTGTGCCCCTTTTCTTTTCTCTTGAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTAATCTGATTGTGACTGTGCCCCTTTTCTTTTCTCTTGAAGTA  500

seq1  AATAGTATTTCATATGCAAGGGCCACCATGAGATATAGCCTAAAAAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTATTTCATATGCAAGGGCCACCATGAGATATAGCCTAAAAAGGAA  550

seq1  GCTCCTGTTACTCGAAACTCGGGATCACTGAGCAAGAGTGAGGGAGAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGTTACTCGAAACTCGGGATCACTGAGCAAGAGTGAGGGAGAGTG  600

seq1  ACTGGCATTTCTTTCTTTTCCTTTCTTTCCTCTTCGTTTCCTTTTTTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCATTTCTTTCTTTTCCTTTCTTTCCTCTTCGTTTCCTTTTTTGAT  650

seq1  ATTATATTTATTAGATATTTTCTTTATTTATATTTCAAATGTTACCCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTTATTAGATATTTTCTTTATTTATATTTCAAATGTTACCCCCT  700

seq1  TTCCTAGTTTCCCCTCCAAAAATCCCCTATCTCCTACCCCTCCCCATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGTTTCCCCTCCAAAAATCCCCTATCTCCTACCCCTCCCCATGTT  750

seq1  CACGAGCCCACCCACTCCCATTGCTTGTCCTGGCAATCCCCTATATTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGCCCACCCACTCCCATTGCTTGTCCTGGCAATCCCCTATATTGAG  800

seq1  GCAGAGAGTCTTAGCAGGACCAAGGGAC-TCTCCTCCCATTGATGACCAA  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCAGAGAGTCTTAGCAGGACCAAGGGACTTCTCCTCCCATTGATGACCAA  850

seq1  CTAGGCCATCCTCTGCTACAAATATAGCTAAAGCCTCAACTTCCACCATG  899
      ||||||||||||||||||||||||||||||| || |||||||||||||||
seq2  CTAGGCCATCCTCTGCTACAAATATAGCTAAGGCTTCAACTTCCACCATG  900

seq1  TGTTTTCTTTGGTTGGTGGTATAGCTCCAAGGAGCTCTGAGTGTACTGAT  949
      ||||||| |||||||   |||||||||  |||||||||||||||||||| 
seq2  TGTTTTC-TTGGTTG--TGTATAGCTC--AGGAGCTCTGAGTGTACTGA-  944

seq1  TAGTTCATATTGATGTTCCTTCTATGAGGCTTCAGTCTCCTTCAGCTCC  998
      ||||    | ||||||| ||||||||||   ||||||||  ||||||||
seq2  TAGT---CAATGATGTT-CTTCTATGAG--CTCAGTCTC--TCAGCTCC  985