BAC Information

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BAC

Clone NameB6Ng01-127H15
Chromosome5 (Build37)
Map Location 107,957,556 - 107,958,524
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666892, LOC100042389, Zfp644, LOC100042400, EG666922, Hfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342
Downstream gene1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127H15.bB6Ng01-127H15.g
ACCDH929585DH929586
length963950
definitionDH929585|Mus musculus domesticus DNA, BAC clone: B6Ng01-127H15, 5' end.DH929586|Mus musculus domesticus DNA, BAC clone: B6Ng01-127H15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcatatattttggatattagccctttatcagatatgtagttgg
taaaagtctttttccattctgtaggctgtggctttgtccaaatgatggtg
tctttgtagatcttagtggctaaccttgatctgtccagaaagtcttgtcc
tgtgcccttgagtttgctattctctactttcttatctgtccagttcagtg
tatctggacttatgtttagatctttgatccatttggaattgagttttgta
cagggtgaaaagtatggatctatttggattttttctacatgcagccaacc
agtttaatcagcatttgttgaagataatattttcccccccattttttggg
tttctggcttctttatcaaatattagatgttcataggtgtgtgaatttat
gtctgggttttcagttcaatctcacagattaacatgtctgtttttgtgct
agttctgtgcagtttttattactatagctccatagtaaaatttgaggtta
gggatggtgatacctctagcagttcttttattatttaggattgttttagt
gtgtgtgtgtttccctatgaagctgaaaattgttctttcaagatttataa
agaattgtgttggaattttgatggggattacattgaatctgggatagtta
tttttactaaattagtcctaccaatccatgagtgtgggagattgtggtcc
ccccctttctccctgtagcctgttggccaccagcctgaggggatttcttc
aacaggaggcagaggctgagagtagtgtttggctggccagacttgtgtgt
ggacagaatgacctatggagacagttacagagagacgagtatagtatact
ttattgtttagggatagggtattagaaggacttttttaggggtagaggta
gagttaattggtccatagcatcagtgagcaagaatggctgattggcttta
gtactgttcttta
gaattcttccttaaagggaatgaatgtataaactgttatctaccgagaag
gctgggagcaggcacatttaatagcctggtgacttttgtgctgtctgtgg
ctggagaccacactggacatcccccgactcctgacatttatcaaagcttg
tttttctctgtcactctacagaccctatcttgttggaaggtgtcaggggt
acttttacagtttcatttagcttactttgttcctcaaggagattcacgca
agctttattgtgcacacaggattgagttcattgtcaccagaaaagttttt
taccaaaatatgcttaaatatgcctaaaataaactactcagggttagact
attctatagattctacactttcaagttgatgtatgtactttcgatctgag
aatctaatttatggaattttttcattgtgactttcttacagactctaaat
taggaatgtcttgactctaagcggaaatgttaaccaagcatgtctatcta
gagattctaggaaatagtgagtcagagagtcaggccaaatacattcttgc
tttcaattttgatctacttgaggctaaatatatatgcacctttaaaagca
caatgtagcaaccatgttcttgcaacaaataaatttcggtaacacttatt
caccctggataaaaacctgtttagtggaattagctatgaaacatatattt
ctgtaaatgccttcagaagactaaaaagcctggacccagaagaacaaagc
ttgaaataaagaccaaagcctataaagtatagggctaagatttgtaataa
aacgaatcccactggtactttgcatcctccagctactaacattgggtgta
catcacattctttataatagtatattgggggttttctgaaaacacaggct
gcagagttcattccacacgagcagaaagaatctgttcatacgactcagta

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_107957556_107958524
seq2: B6Ng01-127H15.g_69_1018

seq1  GAATTCTTCCTTAAAGGGAATGAATGTATAAACTGTTATCTACCGAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTTAAAGGGAATGAATGTATAAACTGTTATCTACCGAGAAG  50

seq1  GCTGGGAGCAGGCACATTTAATAGCCTGGTGACTTTTGTGCTGTCTGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAGCAGGCACATTTAATAGCCTGGTGACTTTTGTGCTGTCTGTGG  100

seq1  CTGGAGACCACACTGGACATCCCCCGACTCCTGACATTTATCAAAGCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGACCACACTGGACATCCCCCGACTCCTGACATTTATCAAAGCTTG  150

seq1  TTTTTCTCTGTCACTCTACAGACCCTATCTTGTTGGAAGGTGTCAGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCTGTCACTCTACAGACCCTATCTTGTTGGAAGGTGTCAGGGGT  200

seq1  ACTTTTACAGTTTCATTTAGCTTACTTTGTTCCTCAAGGAGATTCACGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTACAGTTTCATTTAGCTTACTTTGTTCCTCAAGGAGATTCACGCA  250

seq1  AGCTTTATTGTGCACACAGGATTGAGTTCATTGTCACCAGAAAAGTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTATTGTGCACACAGGATTGAGTTCATTGTCACCAGAAAAGTTTTT  300

seq1  TACCAAAATATGCTTAAATATGCCTAAAATAAACTACTCAGGGTTAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAATATGCTTAAATATGCCTAAAATAAACTACTCAGGGTTAGACT  350

seq1  ATTCTATAGATTCTACACTTTCAAGTTGATGTATGTACTTTCGATCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATAGATTCTACACTTTCAAGTTGATGTATGTACTTTCGATCTGAG  400

seq1  AATCTAATTTATGGAATTTTTTCATTGTGACTTTCTTACAGACTCTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAATTTATGGAATTTTTTCATTGTGACTTTCTTACAGACTCTAAAT  450

seq1  TAGGAATGTCTTGACTCTAAGCGGAAATGTTAACCAAGCATGTCTATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATGTCTTGACTCTAAGCGGAAATGTTAACCAAGCATGTCTATCTA  500

seq1  GAGATTCTAGGAAATAGTGAGTCAGAGAGTCAGGCCAAATACATTCTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCTAGGAAATAGTGAGTCAGAGAGTCAGGCCAAATACATTCTTGC  550

seq1  TTTCAATTTTGATCTACTTGAGGCTAAATATATATGCACCTTTAAAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTTTGATCTACTTGAGGCTAAATATATATGCACCTTTAAAAGCA  600

seq1  CAATGTAGCAACCATGTTCTTGCAACAAATAAATTTCGGTAACACTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAGCAACCATGTTCTTGCAACAAATAAATTTCGGTAACACTTATT  650

seq1  CACCCTGGATAAAAACCTGTTTAGTGGAATTAGCTATGAAACATATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGGATAAAAACCTGTTTAGTGGAATTAGCTATGAAACATATATTT  700

seq1  CTGTAAAATGCCTTCAGGAAGACTAAATAGCCTGGACCCAGAAGAACAAA  750
      |||| ||||||||||| |||||||||| ||||||||||||||||||||||
seq2  CTGT-AAATGCCTTCA-GAAGACTAAAAAGCCTGGACCCAGAAGAACAAA  748

seq1  GCTTGAAATAAAGACCAAAGCCTATAAAGTAATAGGGCTAAGAATTGTAA  800
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  GCTTGAAATAAAGACCAAAGCCTATAAAGT-ATAGGGCTAAGATTTGTAA  797

seq1  TAAAAACGAAATCCCACTGGTACTGTGCATCCTCCAGCTACTAACATTGG  850
      | |||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  T-AAAACG-AATCCCACTGGTACTTTGCATCCTCCAGCTACTAACATTGG  845

seq1  GTGGTACATCAACATTCCTTTTATTAATTAGTATATTGTGGGGTCTCTGA  900
      || ||||||| ||||||  |||||  | |||||||||| ||| | |||||
seq2  GT-GTACATC-ACATTC--TTTAT--AATAGTATATTGGGGGTTTTCTGA  889

seq1  GAACACCAGGGCTGGCAGAGTACAATCCACACGAGGCAAGAAGGAAATCT  950
       |||||   |||| ||||||| || ||||||||||   |||| | |||||
seq2  AAACAC--AGGCT-GCAGAGTTCATTCCACACGAG--CAGAAAG-AATCT  933

seq1  GTTTCAATACGACTCAGTA  969
      |||   |||||||||||||
seq2  GTT--CATACGACTCAGTA  950