BAC Information

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BAC

Clone NameB6Ng01-127J02
Chromosome5 (Build37)
Map Location 149,395,101 - 149,554,486
singlet/doubletdoublet
Overlap gene2210417A02Rik
Upstream geneFlt1, LOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3
Downstream geneLOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik, Hsp110, EG433968, B3galtl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127J02.bB6Ng01-127J02.g
ACCDH929651DH929652
length1,009843
definitionDH929651|Mus musculus domesticus DNA, BAC clone: B6Ng01-127J02, 5' end.DH929652|Mus musculus domesticus DNA, BAC clone: B6Ng01-127J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,395,101 - 149,396,109)(149,553,644 - 149,554,486)
sequence
gaattcatccactcatcagaagctcactgctctgaaggctaacccactcc
ataacagcaattgatagagtttggaaaggaatctccctgaaaggttagct
gtgttaaaggcttagttgccagtggataagcttctagggagtaatggaat
ggagtgtcctctgactgaatcagtgggtgaatctgttgacggatacataa
ctagatggcattgtttggaggtggtggaaacctgtgaggttgggtctcgt
tggcagggtgtgctcttgggagctgtgtcttgctcttggcccctctattc
tctctgcttcctggacgccacgagggaagcagctttggcctacgtgggct
tttgccatgactttgccttgccacagatccacagccacgaagccagccca
tcatagatgcaaacctgcaaaaccatgagccaaaataagccttttcctcc
ttaaaattgttctatctgggatttgtcacagtgcttcccctcccctcccc
ccaaaaaacctcacacagtgttcctcaattcccagaggacaaagttctct
cgaatgatcgcctctcacagattgcttctctccatgctgtaacaggcaac
tgcatctcaaaacgagctttggagaggactctcagaccgtggaagaatga
ggatgctgtctttctctttcttttttttccccagtcttgttttgtttgcg
atagggtctctcaactgtgcagctgaaagaacctagtggggaaaccccca
ctcaattctcgatttggcatgcacccaagaatcacgaacagacgaccatc
ttgatgtaaaaacatgaggtagtttaatgatggagctctgggctgacaca
tatctcccgcaggagacagaggtgtcgaccacgtggtggagccataatgg
cggagctccggttcgaacgtatctcacacaggagacagtggttttgacca
caggccttggaagctaggggttttattagaaaaggggtggggctgggggg
aggaattgg
gaattcttaatgcacaagggcaagggtcactcaaatgacggcttcaagac
atatagaatccaaagcttgactctttcagatcatctcctggagaacggtt
tttcttttcttccttaggaatagaggggcttcaacgggtccttcaaccga
gaacaagatacgggaaggcttacttcctgagagagggatgtagggaagaa
agacagaggcggaactgtgtgctgttcctttcccaggattcccctcaggg
tgcacagcaggtgggaatcacagctgctttctcagacttagattacagtt
cctgcaaacagactctcttctttccttttctgacccagcagactgctaag
gcgattaaacatatctctgctctcaggtaccaagtgtggtgcagcaaaga
gttggacattgtaacagttagaattaaggcccttaaaaaggagattctaa
aggggctagagagatggctctgtggttaggaacactggctgctcttccaa
agggcctggtggctcccaaccatgtgaaagtgcctgggaatttccaggtc
ctgggaatctgatgcccccttctggcctctatggggtattgcatccatgt
ggtgcacagacatttatgcaggcaaacgttcatacacataaaataaaaat
aaatctttgaaaagagagaaagaggggcctggagagatggttcaatagtt
aagagaattttccatgtccctgctccacacatccctctcacgggcttctt
gactagcttgcggctctgtgaattttcttcggctcgccctagctctgtgg
taggggtcacccttcctacttgcttggcaggtcgccctcccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_149395101_149396109
seq2: B6Ng01-127J02.b_47_1055

seq1  GAATTCATCCACTCATCAGAAGCTCACTGCTCTGAAGGCTAACCCACTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCACTCATCAGAAGCTCACTGCTCTGAAGGCTAACCCACTCC  50

seq1  ATAACAGCAATTGATAGAGTTTGGAAAGGAATCTCCCTGAAAGGTTAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGCAATTGATAGAGTTTGGAAAGGAATCTCCCTGAAAGGTTAGCT  100

seq1  GTGTTAAAGGCTTAGTTGCCAGTGGATAAGCTTCTAGGGAGTAATGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAAAGGCTTAGTTGCCAGTGGATAAGCTTCTAGGGAGTAATGGAAT  150

seq1  GGAGTGTCCTCTGACTGAATCAGTGGGTGAATCTGTTGACGGATACATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTCCTCTGACTGAATCAGTGGGTGAATCTGTTGACGGATACATAA  200

seq1  CTAGATGGCATTGTTTGGAGGTGGTGGAAACCTGTGAGGTTGGGTCTCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGGCATTGTTTGGAGGTGGTGGAAACCTGTGAGGTTGGGTCTCGT  250

seq1  TGGCAGGGTGTGCTCTTGGGAGCTGTGTCTTGCTCTTGGCCCCTCTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGGTGTGCTCTTGGGAGCTGTGTCTTGCTCTTGGCCCCTCTATTC  300

seq1  TCTCTGCTTCCTGGACGCCACGAGGGAAGCAGCTTTGGCCTACGTGGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTTCCTGGACGCCACGAGGGAAGCAGCTTTGGCCTACGTGGGCT  350

seq1  TTTGCCATGACTTTGCCTTGCCACAGATCCACAGCCACGAAGCCAGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATGACTTTGCCTTGCCACAGATCCACAGCCACGAAGCCAGCCCA  400

seq1  TCATAGATGCAAACCTGCAAAACCATGAGCCAAAATAAGCCTTTTCCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGATGCAAACCTGCAAAACCATGAGCCAAAATAAGCCTTTTCCTCC  450

seq1  TTAAAATTGTTCTATCTGGGATTTGTCACAGTGCTTCCCCTCCCCTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTGTTCTATCTGGGATTTGTCACAGTGCTTCCCCTCCCCTCCCC  500

seq1  CCAAAAAACCTCACACAGTGTTCCTCAATTCCCAGAGGACAAAGTTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAACCTCACACAGTGTTCCTCAATTCCCAGAGGACAAAGTTCTCT  550

seq1  CGAATGATCGCCTCTCACAGATTGCTTCTCTCCATGCTGTAACAGGCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATGATCGCCTCTCACAGATTGCTTCTCTCCATGCTGTAACAGGCAAC  600

seq1  TGCATCTCAAAACGAGCTTTGGAGAGGACTCTCAGACCGTGGAAGAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTCAAAACGAGCTTTGGAGAGGACTCTCAGACCGTGGAAGAATGA  650

seq1  GGATGCTGTCTTTCTCTTTCTTTTTTTTCCCCAGTCTTGTTTTGTTTGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTGTCTTTCTCTTTCTTTTTTTTCCCCAGTCTTGTTTTGTTTGCG  700

seq1  ATAGGGTCTCTCAACTGTGCAGCTGAAAGAACCTAGTGGGGAAACCCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTCTCTCAACTGTGCAGCTGAAAGAACCTAGTGGGGAAACCCCCA  750

seq1  CTCAATTCTCGATTTGGCATGCACCCAAGAATCACGAACAGACGACCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTCTCGATTTGGCATGCACCCAAGAATCACGAACAGACGACCATC  800

seq1  TTGATGTAAAAACATGAGGTAGTTTAATGATGGAGCTCTGGGCTGACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTAAAAACATGAGGTAGTTTAATGATGGAGCTCTGGGCTGACACA  850

seq1  TATCTCCCGCAGGAGACAGAGGTGTCGACCACGTGGTGGAGCCATAATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCCGCAGGAGACAGAGGTGTCGACCACGTGGTGGAGCCATAATGG  900

seq1  CGGAGCTCCGGTTCGAAACGTATCTCACACAGGAGACAGTGGTTTTGACC  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CGGAGCTCCGGTTCG-AACGTATCTCACACAGGAGACAGTGGTTTTGACC  949

seq1  ACAAGCCTTGGAAGCTAGGGGTTTTTATAGAAAAGGGGTGGGGCT-GGGG  999
      ||| |||||||||||||||||||||  |||||||||||||||||| ||||
seq2  ACAGGCCTTGGAAGCTAGGGGTTTTATTAGAAAAGGGGTGGGGCTGGGGG  999

seq1  GAGGAATTGG  1009
      ||||||||||
seq2  GAGGAATTGG  1009

seq1: chr5_149553644_149554486
seq2: B6Ng01-127J02.g_70_912 (reverse)

seq1  TGGGGAGGGCGACCTGGCAAGGCAGGTGGGAAGGGTGACCCCTGCCACAG  50
      |||||||||||||||| ||| ||| || ||||||||||||||| ||||||
seq2  TGGGGAGGGCGACCTGCCAA-GCAAGTAGGAAGGGTGACCCCTACCACAG  49

seq1  AGCTCTGGGCGAGCAGAAGAAAATTCACAGAGCCGCAAGCTGAGTCAAGA  100
      ||||  |||||||| |||||||||||||||||||||||||| ||||||||
seq2  AGCT-AGGGCGAGCCGAAGAAAATTCACAGAGCCGCAAGCT-AGTCAAGA  97

seq1  AGCCCGAGAGAAGGATGTGTGGAGCA-GGACATGGCAAATTCTCTTAACT  149
      |||||| |||| |||||||||||||| |||||||| ||||||||||||||
seq2  AGCCCGTGAGAGGGATGTGTGGAGCAGGGACATGGAAAATTCTCTTAACT  147

seq1  ATTGAACCATCTCTCCA-GCCCCTCTTTCTCTCTTTTCAAAGATTTATTT  198
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATTGAACCATCTCTCCAGGCCCCTCTTTCTCTCTTTTCAAAGATTTATTT  197

seq1  TTATTTTATGTGTATGAACGTTTGCCTGCATAAATGTCTGTGCACCACAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATGTGTATGAACGTTTGCCTGCATAAATGTCTGTGCACCACAT  247

seq1  GGATGCAATA-CCCATAGAGGCCAGAAGGGGGCATCAGATTCCCAGGACC  297
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGATGCAATACCCCATAGAGGCCAGAAGGGGGCATCAGATTCCCAGGACC  297

seq1  TGGAAATTCCCAGGCACTTTCACATGGTTGGGAGCCACCAGGCCCTTTGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATTCCCAGGCACTTTCACATGGTTGGGAGCCACCAGGCCCTTTGG  347

seq1  AAGAGCAGCCAGTGTTCCTAACCACAGAGCCATCTCTCTAGCCCCTTTAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGCCAGTGTTCCTAACCACAGAGCCATCTCTCTAGCCCCTTTAG  397

seq1  AATCTCCTTTTTAAGGGCCTTAATTCTAACTGTTACAATGTCCAACTCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCTTTTTAAGGGCCTTAATTCTAACTGTTACAATGTCCAACTCTT  447

seq1  TGCTGCACCACACTTGGTACCTGAGAGCAGAGATATGTTTAATCGCCTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCACCACACTTGGTACCTGAGAGCAGAGATATGTTTAATCGCCTTA  497

seq1  GCAGTCTGCTGGGTCAGAAAAGGAAAGAAGAGAGTCTGTTTGCAGGAACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTGCTGGGTCAGAAAAGGAAAGAAGAGAGTCTGTTTGCAGGAACT  547

seq1  GTAATCTAAGTCTGAGAAAGCAGCTGTGATTCCCACCTGCTGTGCACCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCTAAGTCTGAGAAAGCAGCTGTGATTCCCACCTGCTGTGCACCCT  597

seq1  GAGGGGAATCCTGGGAAAGGAACAGCACACAGTTCCGCCTCTGTCTTTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAATCCTGGGAAAGGAACAGCACACAGTTCCGCCTCTGTCTTTCT  647

seq1  TCCCTACATCCCTCTCTCAGGAAGTAAGCCTTCCCGTATCTTGTTCTCGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACATCCCTCTCTCAGGAAGTAAGCCTTCCCGTATCTTGTTCTCGG  697

seq1  TTGAAGGACCCGTTGAAGCCCCTCTATTCCTAAGGAAGAAAAGAAAAACC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGACCCGTTGAAGCCCCTCTATTCCTAAGGAAGAAAAGAAAAACC  747

seq1  GTTCTCCAGGAGATGATCTGAAAGAGTCAAGCTTTGGATTCTATATGTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCAGGAGATGATCTGAAAGAGTCAAGCTTTGGATTCTATATGTCT  797

seq1  TGAAGCCGTCATTTGAGTGACCCTTGCCCTTGTGCATTAAGAATTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCGTCATTTGAGTGACCCTTGCCCTTGTGCATTAAGAATTC  843