BAC Information

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BAC

Clone NameB6Ng01-127L11
Chromosome5 (Build37)
Map Location 116,446,999 - 116,534,236
singlet/doubletdoublet
Overlap geneCit, Prkab1, LOC545798
Upstream geneSppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032
Downstream geneCcdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684, LOC665073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127L11.bB6Ng01-127L11.g
ACCDH929758DH929759
length1,1271,034
definitionDH929758|Mus musculus domesticus DNA, BAC clone: B6Ng01-127L11, 5' end.DH929759|Mus musculus domesticus DNA, BAC clone: B6Ng01-127L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,446,999 - 116,448,134)(116,533,199 - 116,534,236)
sequence
gaattcttgccctggtgtccgtccactgcaatctccatcttgttgtcccc
aaagggaagaaggactttgctgagcttagcatcttcccagtgctctgtgc
aaacacaagcatgtggtagacttctccccatctgggggataacatgctct
gcacaagcttctcaacttgccctggtagacacagggcctcctggtgcgtc
ctttaccttgcacagagttccatggggatgcagtaatttacttaactgat
ataagttaagttaggttgtaatgagcaacaaggtagcgactgagcccaag
ctagtgtggttacactgagatgggtgctggatgctgggtcattggcacca
tgataggtgctggatgctgggtcattggcaccatgataggtgctggatgc
ttggtcactggtccttccttgttcaggttttgattttactcccccctccc
tcccccacgccattttcccccctcatgctcatcctccgcggtggccttgc
agcctacagagaaccttatctgtttgtgactcacttcaactccctggaag
tcattgagatccaggccagatcctcactggggtaagcgtttcccgtttcc
cgccttgctttgaagacaggagtgccacccagcaacctttgtcgccagta
acaactttgtcaactctcttctggaaccctgcaggagccctgcccgagca
tatctggaaattccaaaccctcgctacctgtgccccgcgatttcctccgg
agcgatttacctggcctcctcataccaggacaagttaagggtcatatgct
gcaaaggaaacctcgtgaaggagtcaggcactgagcagcaccgggtgccc
tccacctcccgcaggtactgagtctccttcctccgccatgtgaagacact
caaggaaaagcatcagactggggagggctcctggtcacagcgggcaggga
gcctctggcattttctctgagggagtcagccttcagtggctctgtagaga
aaacggctcagactcatgcttcttgctttgctcatggtctgtggtagtgc
tgctgagccaaggaacctgtggcctttcttcgggctgcttacgctcagtg
caagaaggcactggagctggtctaatc
gaattcattgtgtgcatacaggagtcactcattcaatgtttggtaaatct
ggtaaactgggcagtggtctgggcgaggcaacaacttctttgtttgtttg
tgttcccttagctgatactagtgggttaaagttgatggtgcagttggtga
gctggaaaagtaagactccgggctggcaagatggctcagcggctaagagc
accgactactcttctgaaggtcctgagttcaaatcccagcaatcctattc
ctaactctaagttcctattctaagaaaccagaatcctgaaaacaggtaac
atttattgagcacatagatttgctgatttaatgtgctctccttgcaacgt
ccaggggaggcatggagcgggacaaatgtagaaactgggtaaagtgatgg
ggactttctttcctgtaaccaagctccatctgggcagagcatctctgttt
tgatttcttagggatagttgacatcccaacaataactgctttctttgccc
cagggctaaagtgaattcccctctctctttttatcccatctctctgtcca
ggatgctcgcaccagccaaaactacctgagagtcttctcgtgggctatga
agtagagagatttcagtctcctgggaagtgaaagaagtgtatataaagtg
ttttaacagctggatagagagggaatctcattccttctaatgatttcggt
gataaggtcctttgcagcccattgaaaacttaaaaggccttgctccctcc
ttacctgcgccctttcttgcaaacttttcagtgcgagttggtccatgcat
ccccagaatggtctctaggtgtgagggatcagttgttcctgttgcctccc
cgggtgaacagagtccctcttctcttccccactcgctttcctccctccct
ccctcttgtagagagctcacccgcctcttggcctaagtccgtgagcccag
ccgccgtgcagctgaggactgacctcgcaggagtatgagtctcctctccc
ttgagccggaacagaagcttttcaaagccctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_116446999_116448134
seq2: B6Ng01-127L11.b_48_1174

seq1  GAATTCTTGCCCTGGTGTCCGTCCACTGCAATCTCCATCTTGTTGTCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCCCTGGTGTCCGTCCACTGCAATCTCCATCTTGTTGTCCCC  50

seq1  AAAGGGAAGAAGGACTTTGCTGAGCTTAGCATCTTCCCAGTGCTCTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAGAAGGACTTTGCTGAGCTTAGCATCTTCCCAGTGCTCTGTGC  100

seq1  AAACACAAGCATGTGGTAGACTTCTCCCCATCTGGGGGATAACATGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAGCATGTGGTAGACTTCTCCCCATCTGGGGGATAACATGCTCT  150

seq1  GCACAAGCTTCTCAACTTGCCCTGGTAGACACAGGGCCTCCTGGTGCGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGCTTCTCAACTTGCCCTGGTAGACACAGGGCCTCCTGGTGCGTC  200

seq1  CTTTACCTTGCACAGAGTTCCATGGGGATGCAGTAATTTACTTAACTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCTTGCACAGAGTTCCATGGGGATGCAGTAATTTACTTAACTGAT  250

seq1  ATAAGTTAAGTTAGGTTGTAATGAGCAACAAGGTAGCGACTGAGCCCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTAAGTTAGGTTGTAATGAGCAACAAGGTAGCGACTGAGCCCAAG  300

seq1  CTAGTGTGGTTACACTGAGATGGGTGCTGGATGCTGGGTCATTGGCACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTGGTTACACTGAGATGGGTGCTGGATGCTGGGTCATTGGCACCA  350

seq1  TGATAGGTGCTGGATGCTGGGTCATTGGCACCATGATAGGTGCTGGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGTGCTGGATGCTGGGTCATTGGCACCATGATAGGTGCTGGATGC  400

seq1  TTGGTCACTGGTCCTTCCTTGTTCAGGTTTTGATTTTACTCCCCCCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCACTGGTCCTTCCTTGTTCAGGTTTTGATTTTACTCCCCCCTCCC  450

seq1  TCCCCCACGCCATTTTCCCCCCTCATGCTCATCCTCCGCGGTGGCCTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACGCCATTTTCCCCCCTCATGCTCATCCTCCGCGGTGGCCTTGC  500

seq1  AGCCTACAGAGAACCTTATCTGTTTGTGACTCACTTCAACTCCCTGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACAGAGAACCTTATCTGTTTGTGACTCACTTCAACTCCCTGGAAG  550

seq1  TCATTGAGATCCAGGCCAGATCCTCACTGGGGTAAGCGTTTCCCGTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAGATCCAGGCCAGATCCTCACTGGGGTAAGCGTTTCCCGTTTCC  600

seq1  CGCCTTGCTTTGAAGACAGGAGTGCCACCCAGCAACCTTTGTCGCCAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTGCTTTGAAGACAGGAGTGCCACCCAGCAACCTTTGTCGCCAGTA  650

seq1  ACAACTTTGTCAACTCTCTTCTGGAACCCTGCAGGAGCCCTGCCCGAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTTGTCAACTCTCTTCTGGAACCCTGCAGGAGCCCTGCCCGAGCA  700

seq1  TATCTGGAAATTCCAAACCCTCGCTACCTGGGCCCCGCGATTTCCTCCGG  750
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATCTGGAAATTCCAAACCCTCGCTACCTGTGCCCCGCGATTTCCTCCGG  750

seq1  AGCGATTTACCTGGCCTCCTCATACCAGGACAAGTTAAGGGTCATATGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGATTTACCTGGCCTCCTCATACCAGGACAAGTTAAGGGTCATATGCT  800

seq1  GCAAAGGAAACCTCGTGAAGGAGTCAGGCACTGAGCAGCACCGGGTGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGAAACCTCGTGAAGGAGTCAGGCACTGAGCAGCACCGGGTGCCC  850

seq1  TCCACCTCCCGCAGGTACTGAGTCTCCTTCCCTCCGCCATGTGAAGACAC  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCACCTCCCGCAGGTACTGAGTCTCCTT-CCTCCGCCATGTGAAGACAC  899

seq1  TCAAGGAAAAGCATCAGACTGGGGAGGGCTCCTGGTCACAGC-GGCAGGG  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCAAGGAAAAGCATCAGACTGGGGAGGGCTCCTGGTCACAGCGGGCAGGG  949

seq1  AGCCTCTGGCA-TTTCCCTGAGGGAGCCAGCCTTCAGTGGCTCTGTAGAG  998
      ||||||||||| |||| ||||||||| |||||||||||||||||||||||
seq2  AGCCTCTGGCATTTTCTCTGAGGGAGTCAGCCTTCAGTGGCTCTGTAGAG  999

seq1  AAAACGGCTCCAGACTCATGCTTCCTTGCTTTGCTCTGTGTCTGTGGTAG  1048
      ||||||||| ||||||||||||| ||||||||||||   |||||||||||
seq2  AAAACGGCT-CAGACTCATGCTT-CTTGCTTTGCTCATGGTCTGTGGTAG  1047

seq1  TGGCTGCTGAGCCCCAGGGAACCCTGTGGCCCCTTCTTCGTGCTGCTTAC  1098
      | |||||||||  ||| |||| ||||||| || ||||||| |||||||||
seq2  T-GCTGCTGAG--CCAAGGAA-CCTGTGG-CCTTTCTTCGGGCTGCTTAC  1092

seq1  GCCCAGTGCAAGAGGCAACTGGAGCCCTTGGTCTAATC  1136
      || |||||||||| |  ||||||||   ||||||||||
seq2  GCTCAGTGCAAGAAGGCACTGGAGC---TGGTCTAATC  1127

seq1: chr5_116533199_116534236
seq2: B6Ng01-127L11.g_71_1104 (reverse)

seq1  TGCAGAGGCTCTGAAAAGCTTTCTGCTCCGGGCTCAAGGGAGATGAGACT  50
      ||||| |||| |||||||| ||||| ||| ||||||||||||| ||||| 
seq2  TGCAG-GGCTTTGAAAAGC-TTCTGTTCC-GGCTCAAGGGAGAGGAGAC-  46

seq1  TCACTACTCCTGCGTAGGTCAGTCCTCTGCCTGCAC-GCGGCTGGGCTCA  99
      ||| |||||||||| |||||||||||| | |||||| |||||||||||||
seq2  TCA-TACTCCTGCG-AGGTCAGTCCTCAG-CTGCACGGCGGCTGGGCTCA  93

seq1  GGGACTTAGGCCAAGAGGCGGG-GAGCCTCTCTACAAGAGGGAGGGAGGG  148
       ||||||||||||||||||||| ||| |||||||||||||||||||||||
seq2  CGGACTTAGGCCAAGAGGCGGGTGAG-CTCTCTACAAGAGGGAGGGAGGG  142

seq1  A-GAAAGCGAGTGGGGGAGGAGGAGGAGGGAGCCTG-TCACCCGGGGAGG  196
      | |||||||||||||| ||   || ||||||  ||| |||||||||||||
seq2  AGGAAAGCGAGTGGGGAAG--AGAAGAGGGACTCTGTTCACCCGGGGAGG  190

seq1  C-ACAGGAACAGCTGATCCCTCACACCTAGAGACCCTTCTGGGGATGCAT  245
      | ||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  CAACAGGAACAACTGATCCCTCACACCTAGAGACCATTCTGGGGATGCAT  240

seq1  GGACCAACTCGCACTGAAAAGTTTGCAAGAAAGGGCGCAGGTAAGGAGGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAACTCGCACTGAAAAGTTTGCAAGAAAGGGCGCAGGTAAGGAGGG  290

seq1  AGCAAGGCCTTTTAAGTTTTCAATGGGCTGCAAAGGACCTTATCACCG-A  344
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGCAAGGCCTTTTAAGTTTTCAATGGGCTGCAAAGGACCTTATCACCGAA  340

seq1  ATCATTAGAAGGAATGAGATTCCCTCTCTATCCAGCTGTTAAAACACTTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTAGAAGGAATGAGATTCCCTCTCTATCCAGCTGTTAAAACACTTT  390

seq1  ATATACACTTCTTTCACTTCCCAGGAGACTGAAATCTCTCTACTTCATAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACTTCTTTCACTTCCCAGGAGACTGAAATCTCTCTACTTCATAG  440

seq1  CCCACGAGAAGACTCTCAGGTAGTTTTGGCTGGTGCGAGCATCCTGGACA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGAGAAGACTCTCAGGTAGTTTTGGCTGGTGCGAGCATCCTGGACA  490

seq1  GAGAGATGGGATAAAAAGAGAGAGGGGAATTCACTTTAGCCCTGGGGCAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGGGATAAAAAGAGAGAGGGGAATTCACTTTAGCCCTGGGGCAA  540

seq1  AGAAAGCAGTTATTGTTGGGATGTCAACTATCCCTAAGAAATCAAAACAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAGTTATTGTTGGGATGTCAACTATCCCTAAGAAATCAAAACAG  590

seq1  AGATGCTCTGCCCAGATGGAGCTTGGTTACAGGAAAGAAAGTCCCCATCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTCTGCCCAGATGGAGCTTGGTTACAGGAAAGAAAGTCCCCATCA  640

seq1  CTTTACCCAGTTTCTACATTTGTCCCGCTCCATGCCTCCCCTGGACGTTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCCAGTTTCTACATTTGTCCCGCTCCATGCCTCCCCTGGACGTTG  690

seq1  CAAGGAGAGCACATTAAATCAGCAAATCTATGTGCTCAATAAATGTTACC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGAGCACATTAAATCAGCAAATCTATGTGCTCAATAAATGTTACC  740

seq1  TGTTTTCAGGATTCTGGTTTCTTAGAATAGGAACTTAGAGTTAGGAATAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAGGATTCTGGTTTCTTAGAATAGGAACTTAGAGTTAGGAATAG  790

seq1  GATTGCTGGGATTTGAACTCAGGACCTTCAGAAGAGTAGTCGGTGCTCTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTGGGATTTGAACTCAGGACCTTCAGAAGAGTAGTCGGTGCTCTT  840

seq1  AGCCGCTGAGCCATCTTGCCAGCCCGGAGTCTTACTTTTCCAGCTCACCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGCTGAGCCATCTTGCCAGCCCGGAGTCTTACTTTTCCAGCTCACCA  890

seq1  ACTGCACCATCAACTTTAACCCACTAGTATCAGCTAAGGGAACACAAACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACCATCAACTTTAACCCACTAGTATCAGCTAAGGGAACACAAACA  940

seq1  AACAAAGAAGTTGTTGCCTCGCCCAGACCACTGCCCAGTTTACCAGATTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAAGTTGTTGCCTCGCCCAGACCACTGCCCAGTTTACCAGATTT  990

seq1  ACCAAACATTGAATGAGTGACTCCTGTATGCACACAATGAATTC  1038
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACATTGAATGAGTGACTCCTGTATGCACACAATGAATTC  1034