BAC Information

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BAC

Clone NameB6Ng01-128H19
Chromosome5 (Build37)
Map Location 16,867,693 - 16,964,563
singlet/doubletdoublet
Overlap geneLOC100041749, LOC100041832
Upstream geneCacna2d1, LOC668121, Hgf, EG668131, LOC626390, LOC668142
Downstream geneSpeer4f, EG630927, Sema3c, Cd36, Gnat3, Gnai1, LOC100041818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128H19.bB6Ng01-128H19.g
ACCDH930325DH930326
length7581,150
definitionDH930325|Mus musculus domesticus DNA, BAC clone: B6Ng01-128H19, 5' end.DH930326|Mus musculus domesticus DNA, BAC clone: B6Ng01-128H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,867,693 - 16,868,471)(16,963,407 - 16,964,563)
sequence
gaattcactaggaagttcaagcttgcatcaaacacaattgtacctcaact
ttcctagtgctttgattacaggcttgtaccaaaacctaagtagctagctt
aattcaacacttgcatctcacagaactatagagattactgactcagcaat
tcagagtccttactgtttttcctgtcattacaagttcatttcccaggatc
tatgtatgggatatcacagtcacttttaacttaactccaagggaaaggtg
attctgtgcaggtgccttatgagtatgtatatgcttacaaaggcacctca
actcatgtgcactagctcagatacctactcataagttaaaaaatagaaat
taatcccataatcagcttccaaacactgacaccattgcatacattagcaa
gattttgacgaaaggacccagatatagttgtctcttgtgagattacgcca
gggcctagccaacacagaagtggatgctcacagtcagctattggatggat
cagagagcccccaatggaggagctagagaaagtacccaaggagctaacgg
gatctgcaatcctataggtagaacaacaatatgaactaaccagtaccccc
cggagctcatgtctctagctgcatatgaatcagaagatagcctagtcacc
taatcggccatcagtggaaagaaaggcccattggtcgtgcaaactttata
tgtctcagtacaggggaatgccaggggccaaaaactgggagtgggtgggg
tgggggag
gaattcagttattgatggtcatgtggactatccactgggcatgggcaaca
catccatgtccatcctcacaaagaaagaaaaagtgttcttcactatcagc
catctttcatctatgggtgtgaacttggtagccctcacccaatccaggct
agaattttaatagcaagatcttatccagggcttgtgtaggcaaccaccac
atctgttgtcagttaatatacaaatgtcctgcctagcaggcagaatttca
cagaactcctccaagccttcaactttatatactttttcttccctcttctg
agatgtctgatgttgagaaaacaggctgatagaaatgtcccatccatggg
tgctcagctattcagtctcagtccatggaactagatgtgtgcaaaagcat
acagtgtcataagcaatgtttcagaaatggaatgtatgaaaaccttacag
ttgtattgcaatttaagtaagggttgtctttcctttaaagacttattttt
atttagcttataaaagggtgggtttttatagggattctgtacacatcatc
actttttgttgacttgcctcaacctctccattcaaatttcatctttcccc
caaactaccacttaaaattttagcctccaatatttttctttctatttttt
atatcatcatgtgtattccattattctctcatgtcttttacttgacttta
atggtcatatgctttcatatagttttgattcatacatactgaattttgac
tttcttttgattccttgtttccctacctgtttgcttcaatccactacctg
cttgaacctccctgagccccgtactgctctgctctactagggtccagatt
ctactagagtacctttcttgctcataccccataatgtctattttcctgac
aaccacatgccttccatcctacacataaacaaaggatgtgaaactagaag
catatacatagagagaacactatgtttttcttcagtcctgtgtgagcttc
tcagtatacttttgccagtttctccatttgaaaatttatgataaaatttt
tgttccagtttatgatatgtcaattcatcccctctgagaactcgattact
gggttggatctagacccatttgaagaaagaaatggaaatggagtgttttt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_16867693_16868471
seq2: B6Ng01-128H19.b_49_805

seq1  GAATTCACTAGGAAGTTCAAGCTTGCATCAAACACAATTGTACCTCAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGGAAGTTCAAGCTTGCATCAAACACAATTGTACCTCAACT  50

seq1  TTCCTAGTGCTTTGATTACAGGCTTGTACCAAAACCTAAGTAGCTAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGTGCTTTGATTACAGGCTTGTACCAAAACCTAAGTAGCTAGCTT  100

seq1  AATTCAACACTTGCATCTCACAGAACTATAGAGATTACTGACTCAGCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAACACTTGCATCTCACAGAACTATAGAGATTACTGACTCAGCAAT  150

seq1  TCAGAGTCCTTACTGTTTTTCCTGTCATTACAAGTTCATTTCCCAGGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTCCTTACTGTTTTTCCTGTCATTACAAGTTCATTTCCCAGGATC  200

seq1  TATGTATGGGATATCACAGTCACTTTTAACTTAACTCCAAGGGAAAGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGGGATATCACAGTCACTTTTAACTTAACTCCAAGGGAAAGGTG  250

seq1  ATTCTGTGCAGGTGCCTTATGAGTATGTATATGCTTACAAAGGCACCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGCAGGTGCCTTATGAGTATGTATATGCTTACAAAGGCACCTCA  300

seq1  ACTCATGTGCACTAGCTCAGATACCTACTCATAAGTTAAAAAATAGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGTGCACTAGCTCAGATACCTACTCATAAGTTAAAAAATAGAAAT  350

seq1  TAATCCCATAATCAGCTTCCAAACACTGACACCATTGCATACATTAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCATAATCAGCTTCCAAACACTGACACCATTGCATACATTAGCAA  400

seq1  GATTTTGACGAAAGGACCCAGATATAGTTGTCTCTTGTGAGATTACGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGACGAAAGGACCCAGATATAGTTGTCTCTTGTGAGATTACGCCA  450

seq1  GGGCCTAGCCAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTAGCCAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGAT  500

seq1  CAGAGAGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAACGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAACGG  550

seq1  GATCTGCAATCCTATAGGTAGAACAACAATATGAACTAACCAGTACCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCAATCCTATAGGTAGAACAACAATATGAACTAACCAGTACCCCC  600

seq1  CGGAGCTCATGTCTCTAGCTGCATATGAATCAGAAGATAGCCTAGTCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGCTCATGTCTCTAGCTGCATATGAATCAGAAGATAGCCTAGTCACC  650

seq1  TAATCGGCCATCAGTGGAAAGAAAGGCCCATTGGTCGTGCAAACTTTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCGGCCATCAGTGGAAAGAAAGGCCCATTGGTCGTGCAAACTTTATA  700

seq1  TGTCTCAGTACAGGGGAATGCCA-GGGCCAAAAACTGGGAGTGGGT-GGG  748
      ||||||||||||||||||||||| |||||||||||||||||||||| |||
seq2  TGTCTCAGTACAGGGGAATGCCAGGGGCCAAAAACTGGGAGTGGGTGGGG  750

seq1  TGGGGGAGTGGGTGAGGGAGCATGTGGGGGA  779
      |||||||                        
seq2  TGGGGGA------------------------  757

seq1: chr5_16963407_16964563
seq2: B6Ng01-128H19.g_68_1217 (reverse)

seq1  AAAACCACT-CATTTCATTCTTCTTTC--AAAATGGGTCTAGATCCCAAC  47
      |||| |||| ||||||  | |||||||   |||||||||||||| |||||
seq2  AAAAACACTCCATTTCCAT-TTCTTTCTTCAAATGGGTCTAGAT-CCAAC  48

seq1  CCAGTAATCGAG-TCTCAGAGGGGATGAATTGAACATATCAATAAACTGG  96
      |||||||||||| ||||||||||||||||||| ||||||| |||||||||
seq2  CCAGTAATCGAGTTCTCAGAGGGGATGAATTG-ACATATC-ATAAACTGG  96

seq1  AACAAAAATTTTAATCAATAAATTTTCAAATGGAGAAACTGGCAAAAGTT  146
      |||||||||||| ||| ||||||||||||||||||||||||||||||| |
seq2  AACAAAAATTTT-ATC-ATAAATTTTCAAATGGAGAAACTGGCAAAAG-T  143

seq1  ATACTGAGAAGCTCACACAGGACCTGAAGAAAAACATAGTGTTCTCTCTA  196
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATACTGAGAAGCTCACACAGGA-CTGAAGAAAAACATAGTGTTCTCTCTA  192

seq1  TGTATATTGCTTCTAGTTTCACATCCTTTGTTTTATGTGTTAGGATGGAA  246
      |||||| ||||||||||||||||||||||| |||||||| ||||||||||
seq2  TGTATA-TGCTTCTAGTTTCACATCCTTTG-TTTATGTG-TAGGATGGAA  239

seq1  GGCATGTGGTTGTCAGGAAAATAGACATTATGGGGTATGAGCAAGAAAGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTGGTTGTCAGGAAAATAGACATTATGGGGTATGAGCAAGAAAGG  289

seq1  TACTCTAGTAGAATCTGGACCCTAGTAGAGCAGAGCAGTACGGGGCTCAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTAGTAGAATCTGGACCCTAGTAGAGCAGAGCAGTACGGGGCTCAG  339

seq1  GGAGGTTCAAGCAGGTAGTGGATTGAAGCAAACAGGTAGGGAAACAAGGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTCAAGCAGGTAGTGGATTGAAGCAAACAGGTAGGGAAACAAGGA  389

seq1  ATCAAAAGAAAGTCAAAATTCAGTATGTATGAATCAAAACTATATGAAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAGAAAGTCAAAATTCAGTATGTATGAATCAAAACTATATGAAAG  439

seq1  CATATGACCATTAAAGTCAAGTAAAAGACATGAGAGAATAATGGAATACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGACCATTAAAGTCAAGTAAAAGACATGAGAGAATAATGGAATACA  489

seq1  CATGATGATATAAAAAATAGAAAGAAAAATATTGGAGGCTAAAATTTTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGATATAAAAAATAGAAAGAAAAATATTGGAGGCTAAAATTTTAA  539

seq1  GTGGTAGTTTGGGGGAAAGATGAAATTTGAATGGAGAGGTTGAGGCAAGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGTTTGGGGGAAAGATGAAATTTGAATGGAGAGGTTGAGGCAAGT  589

seq1  CAACAAAAAGTGATGATGTGTACAGAATCCCTATAAAAACCCACCCTTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAAAGTGATGATGTGTACAGAATCCCTATAAAAACCCACCCTTTT  639

seq1  ATAAGCTAAATAAAAATAAGTCTTTAAAGGAAAGACAACCCTTACTTAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTAAATAAAAATAAGTCTTTAAAGGAAAGACAACCCTTACTTAAA  689

seq1  TTGCAATACAACTGTAAGGTTTTCATACATTCCATTTCTGAAACATTGCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATACAACTGTAAGGTTTTCATACATTCCATTTCTGAAACATTGCT  739

seq1  TATGACACTGTATGCTTTTGCACACATCTAGTTCCATGGACTGAGACTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACACTGTATGCTTTTGCACACATCTAGTTCCATGGACTGAGACTGA  789

seq1  ATAGCTGAGCACCCATGGATGGGACATTTCTATCAGCCTGTTTTCTCAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGAGCACCCATGGATGGGACATTTCTATCAGCCTGTTTTCTCAAC  839

seq1  ATCAGACATCTCAGAAGAGGGAAGAAAAAGTATATAAAGTTGAAGGCTTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACATCTCAGAAGAGGGAAGAAAAAGTATATAAAGTTGAAGGCTTG  889

seq1  GAGGAGTTCTGTGAAATTCTGCCTGCTAGGCAGGACATTTGTATATTAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTTCTGTGAAATTCTGCCTGCTAGGCAGGACATTTGTATATTAAC  939

seq1  TGACAACAGATGTGGTGGTTGCCTACACAAGCCCTGGATAAGATCTTGCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACAGATGTGGTGGTTGCCTACACAAGCCCTGGATAAGATCTTGCT  989

seq1  ATTAAAATTCTAGCCTGGATTGGGTGAGGGCTACCAAGTTCACACCCATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATTCTAGCCTGGATTGGGTGAGGGCTACCAAGTTCACACCCATA  1039

seq1  GATGAAAGATGGCTGATAGTGAAGAACACTTTTTCTTTCTTTGTGAGGAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAGATGGCTGATAGTGAAGAACACTTTTTCTTTCTTTGTGAGGAT  1089

seq1  GGACATGGATGTGTTGCCCATGCCCAGTGGATAGTCCACATGACCATCAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGGATGTGTTGCCCATGCCCAGTGGATAGTCCACATGACCATCAA  1139

seq1  TAACTGAATTC  1157
      |||||||||||
seq2  TAACTGAATTC  1150